Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01784 and H281DRAFT_01785 are separated by 160 nucleotides H281DRAFT_01785 and H281DRAFT_01786 overlap by 4 nucleotides H281DRAFT_01786 and H281DRAFT_01787 are separated by 301 nucleotides H281DRAFT_01787 and H281DRAFT_01788 are separated by 101 nucleotides
H281DRAFT_01784: H281DRAFT_01784 - Pimeloyl-ACP methyl ester carboxylesterase, at 686,515 to 687,387
_01784
H281DRAFT_01785: H281DRAFT_01785 - hypothetical protein, at 687,548 to 688,192
_01785
H281DRAFT_01786: H281DRAFT_01786 - RNA polymerase sigma-70 factor, ECF subfamily, at 688,189 to 688,779
_01786
H281DRAFT_01787: H281DRAFT_01787 - putative oxidoreductase, at 689,081 to 689,590
_01787
H281DRAFT_01788: H281DRAFT_01788 - protein of unknown function (DUF4148), at 689,692 to 690,036
_01788
Position (kb) 688
689 Strain fitness (log2 ratio) -1
0
1 at 687.211 kb on - strand, within H281DRAFT_01784 at 687.245 kb on + strand, within H281DRAFT_01784 at 688.309 kb on + strand, within H281DRAFT_01786 at 688.310 kb on - strand, within H281DRAFT_01786 at 688.310 kb on - strand, within H281DRAFT_01786 at 688.781 kb on + strand at 688.781 kb on + strand at 688.782 kb on - strand at 688.852 kb on - strand at 688.895 kb on + strand at 688.997 kb on + strand at 689.048 kb on - strand at 689.054 kb on + strand at 689.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 687,211 - H281DRAFT_01784 0.80 +1.4 687,245 + H281DRAFT_01784 0.84 +0.4 688,309 + H281DRAFT_01786 0.20 +1.3 688,310 - H281DRAFT_01786 0.20 +0.8 688,310 - H281DRAFT_01786 0.20 +0.4 688,781 + +0.0 688,781 + -0.4 688,782 - -0.6 688,852 - -0.4 688,895 + -1.5 688,997 + -0.7 689,048 - +0.0 689,054 + -0.0 689,120 - +0.2
Or see this region's nucleotide sequence