Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01507 and H281DRAFT_01508 are separated by 65 nucleotides H281DRAFT_01508 and H281DRAFT_01509 overlap by 4 nucleotides H281DRAFT_01509 and H281DRAFT_01510 are separated by 13 nucleotides H281DRAFT_01510 and H281DRAFT_01511 are separated by 86 nucleotides
H281DRAFT_01507: H281DRAFT_01507 - D-galactonate transporter, at 377,138 to 378,472
_01507
H281DRAFT_01508: H281DRAFT_01508 - Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase, at 378,538 to 379,200
_01508
H281DRAFT_01509: H281DRAFT_01509 - Uncharacterized conserved protein YgbK, DUF1537 family, at 379,197 to 380,507
_01509
H281DRAFT_01510: H281DRAFT_01510 - 3-hydroxyisobutyrate dehydrogenase, at 380,521 to 381,411
_01510
H281DRAFT_01511: H281DRAFT_01511 - transcriptional regulator, GntR family, at 381,498 to 382,202
_01511
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1
2 at 378.263 kb on + strand, within H281DRAFT_01507 at 378.345 kb on + strand at 378.495 kb on + strand at 378.815 kb on + strand, within H281DRAFT_01508 at 378.816 kb on - strand, within H281DRAFT_01508 at 378.816 kb on - strand, within H281DRAFT_01508 at 378.933 kb on - strand, within H281DRAFT_01508 at 378.933 kb on - strand, within H281DRAFT_01508 at 378.933 kb on - strand at 379.145 kb on - strand at 379.535 kb on - strand, within H281DRAFT_01509 at 380.243 kb on - strand, within H281DRAFT_01509 at 380.737 kb on + strand, within H281DRAFT_01510 at 380.738 kb on - strand, within H281DRAFT_01510 at 380.738 kb on - strand, within H281DRAFT_01510 at 380.738 kb on - strand, within H281DRAFT_01510 at 380.798 kb on + strand, within H281DRAFT_01510 at 380.799 kb on - strand, within H281DRAFT_01510 at 381.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 378,263 + H281DRAFT_01507 0.84 +0.5 378,345 + +1.0 378,495 + +0.5 378,815 + H281DRAFT_01508 0.42 +0.3 378,816 - H281DRAFT_01508 0.42 +0.5 378,816 - H281DRAFT_01508 0.42 -0.2 378,933 - H281DRAFT_01508 0.60 -0.5 378,933 - H281DRAFT_01508 0.60 -0.3 378,933 - +1.7 379,145 - -1.2 379,535 - H281DRAFT_01509 0.26 +1.6 380,243 - H281DRAFT_01509 0.80 +0.3 380,737 + H281DRAFT_01510 0.24 +0.1 380,738 - H281DRAFT_01510 0.24 +1.1 380,738 - H281DRAFT_01510 0.24 +1.9 380,738 - H281DRAFT_01510 0.24 -0.2 380,798 + H281DRAFT_01510 0.31 +0.1 380,799 - H281DRAFT_01510 0.31 -0.7 381,422 + -1.5
Or see this region's nucleotide sequence