Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01215

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01213 and H281DRAFT_01214 are separated by 29 nucleotidesH281DRAFT_01214 and H281DRAFT_01215 are separated by 197 nucleotidesH281DRAFT_01215 and H281DRAFT_01216 are separated by 526 nucleotidesH281DRAFT_01216 and H281DRAFT_01217 are separated by 163 nucleotides H281DRAFT_01213: H281DRAFT_01213 - Protein of unknown function (DUF1653), at 53,143 to 53,346 _01213 H281DRAFT_01214: H281DRAFT_01214 - Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains, at 53,376 to 54,020 _01214 H281DRAFT_01215: H281DRAFT_01215 - hypothetical protein, at 54,218 to 54,436 _01215 H281DRAFT_01216: H281DRAFT_01216 - hypothetical protein, at 54,963 to 55,250 _01216 H281DRAFT_01217: H281DRAFT_01217 - bacterial translation initiation factor 1 (bIF-1), at 55,414 to 55,689 _01217 Position (kb) 54 55Strain fitness (log2 ratio) -1 0 1 2at 53.304 kb on - strand, within H281DRAFT_01213at 53.307 kb on + strand, within H281DRAFT_01213at 53.308 kb on - strand, within H281DRAFT_01213at 53.318 kb on + strand, within H281DRAFT_01213at 53.319 kb on - strand, within H281DRAFT_01213at 53.319 kb on - strand, within H281DRAFT_01213at 53.409 kb on - strandat 53.410 kb on + strandat 53.513 kb on + strand, within H281DRAFT_01214at 53.513 kb on + strand, within H281DRAFT_01214at 53.514 kb on - strand, within H281DRAFT_01214at 53.514 kb on - strand, within H281DRAFT_01214at 53.514 kb on - strand, within H281DRAFT_01214at 53.572 kb on + strand, within H281DRAFT_01214at 53.690 kb on + strand, within H281DRAFT_01214at 53.821 kb on + strand, within H281DRAFT_01214at 53.821 kb on + strand, within H281DRAFT_01214at 53.853 kb on + strand, within H281DRAFT_01214at 53.854 kb on - strand, within H281DRAFT_01214at 54.118 kb on - strandat 54.189 kb on - strandat 54.200 kb on + strandat 54.200 kb on + strandat 54.200 kb on + strandat 54.317 kb on - strand, within H281DRAFT_01215at 54.335 kb on - strand, within H281DRAFT_01215at 54.567 kb on - strandat 54.570 kb on + strandat 54.570 kb on + strandat 54.570 kb on + strandat 54.589 kb on - strandat 54.595 kb on - strandat 54.946 kb on + strandat 54.946 kb on + strandat 54.947 kb on - strandat 54.947 kb on - strandat 54.956 kb on + strandat 54.956 kb on + strandat 54.957 kb on - strandat 54.960 kb on + strandat 54.960 kb on + strandat 54.960 kb on + strandat 54.960 kb on + strandat 54.960 kb on + strandat 54.961 kb on - strandat 54.961 kb on - strandat 54.961 kb on - strandat 54.961 kb on - strandat 54.962 kb on + strandat 54.962 kb on + strandat 54.962 kb on + strandat 54.962 kb on + strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.968 kb on + strandat 54.968 kb on + strandat 54.968 kb on + strandat 54.969 kb on - strandat 54.991 kb on - strandat 54.991 kb on - strandat 54.991 kb on - strandat 55.000 kb on - strand, within H281DRAFT_01216at 55.071 kb on + strand, within H281DRAFT_01216at 55.143 kb on + strand, within H281DRAFT_01216at 55.143 kb on + strand, within H281DRAFT_01216at 55.282 kb on + strandat 55.282 kb on + strandat 55.295 kb on + strandat 55.351 kb on + strandat 55.409 kb on + strandat 55.409 kb on + strandat 55.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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53,304 - H281DRAFT_01213 0.79 -0.5
53,307 + H281DRAFT_01213 0.80 -1.4
53,308 - H281DRAFT_01213 0.81 +0.4
53,318 + H281DRAFT_01213 0.86 +0.2
53,319 - H281DRAFT_01213 0.86 +0.9
53,319 - H281DRAFT_01213 0.86 -0.0
53,409 - +1.5
53,410 + +0.4
53,513 + H281DRAFT_01214 0.21 +0.2
53,513 + H281DRAFT_01214 0.21 +0.8
53,514 - H281DRAFT_01214 0.21 -1.6
53,514 - H281DRAFT_01214 0.21 +0.2
53,514 - H281DRAFT_01214 0.21 -0.7
53,572 + H281DRAFT_01214 0.30 -1.6
53,690 + H281DRAFT_01214 0.49 +0.3
53,821 + H281DRAFT_01214 0.69 -0.2
53,821 + H281DRAFT_01214 0.69 +1.0
53,853 + H281DRAFT_01214 0.74 +0.3
53,854 - H281DRAFT_01214 0.74 -1.2
54,118 - +0.8
54,189 - +0.9
54,200 + +0.5
54,200 + -0.2
54,200 + +0.8
54,317 - H281DRAFT_01215 0.45 +0.7
54,335 - H281DRAFT_01215 0.53 +0.2
54,567 - -1.2
54,570 + +0.2
54,570 + +0.5
54,570 + +0.8
54,589 - +0.0
54,595 - +0.2
54,946 + -0.6
54,946 + -1.2
54,947 - -0.3
54,947 - +1.1
54,956 + -0.4
54,956 + +0.6
54,957 - -0.4
54,960 + +0.4
54,960 + -1.0
54,960 + +0.8
54,960 + +0.7
54,960 + +0.7
54,961 - +0.6
54,961 - -0.0
54,961 - +1.4
54,961 - -0.2
54,962 + +0.2
54,962 + +0.4
54,962 + +0.4
54,962 + +0.4
54,963 - -0.7
54,963 - -0.9
54,963 - -0.8
54,963 - +0.3
54,963 - -0.6
54,963 - +1.0
54,968 + -0.8
54,968 + +0.1
54,968 + +0.6
54,969 - -0.1
54,991 - +1.0
54,991 - +0.2
54,991 - +0.3
55,000 - H281DRAFT_01216 0.13 +0.8
55,071 + H281DRAFT_01216 0.38 +1.8
55,143 + H281DRAFT_01216 0.62 -0.2
55,143 + H281DRAFT_01216 0.62 -0.2
55,282 + +0.5
55,282 + -1.0
55,295 + -0.2
55,351 + +0.6
55,409 + -1.2
55,409 + +0.6
55,410 - -0.5

Or see this region's nucleotide sequence