Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01097

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01096 and H281DRAFT_01097 are separated by 65 nucleotidesH281DRAFT_01097 and H281DRAFT_01098 overlap by 11 nucleotides H281DRAFT_01096: H281DRAFT_01096 - thioredoxin reductase (NADPH), at 1,230,855 to 1,232,582 _01096 H281DRAFT_01097: H281DRAFT_01097 - Alginate export, at 1,232,648 to 1,234,270 _01097 H281DRAFT_01098: H281DRAFT_01098 - hypothetical protein, at 1,234,260 to 1,235,210 _01098 Position (kb) 1232 1233 1234 1235Strain fitness (log2 ratio) -3 -2 -1 0 1at 1232.638 kb on + strandat 1232.638 kb on + strandat 1232.643 kb on - strandat 1232.794 kb on - strandat 1232.794 kb on - strandat 1233.181 kb on - strand, within H281DRAFT_01097at 1233.304 kb on - strand, within H281DRAFT_01097at 1233.595 kb on + strand, within H281DRAFT_01097at 1233.747 kb on + strand, within H281DRAFT_01097at 1233.751 kb on + strand, within H281DRAFT_01097at 1233.752 kb on - strand, within H281DRAFT_01097at 1233.834 kb on + strand, within H281DRAFT_01097at 1233.834 kb on + strand, within H281DRAFT_01097at 1233.865 kb on - strand, within H281DRAFT_01097at 1233.894 kb on - strand, within H281DRAFT_01097at 1234.076 kb on - strand, within H281DRAFT_01097at 1234.287 kb on - strandat 1234.288 kb on + strandat 1234.289 kb on - strandat 1234.335 kb on - strandat 1234.336 kb on + strandat 1234.661 kb on - strand, within H281DRAFT_01098at 1234.811 kb on + strand, within H281DRAFT_01098at 1234.903 kb on + strand, within H281DRAFT_01098at 1235.024 kb on - strand, within H281DRAFT_01098at 1235.217 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,232,638 + -1.8
1,232,638 + -1.5
1,232,643 - +0.3
1,232,794 - -0.8
1,232,794 - -0.2
1,233,181 - H281DRAFT_01097 0.33 +0.7
1,233,304 - H281DRAFT_01097 0.40 -2.7
1,233,595 + H281DRAFT_01097 0.58 +1.3
1,233,747 + H281DRAFT_01097 0.68 -0.3
1,233,751 + H281DRAFT_01097 0.68 +0.2
1,233,752 - H281DRAFT_01097 0.68 -0.8
1,233,834 + H281DRAFT_01097 0.73 +0.0
1,233,834 + H281DRAFT_01097 0.73 +0.0
1,233,865 - H281DRAFT_01097 0.75 -0.2
1,233,894 - H281DRAFT_01097 0.77 +0.1
1,234,076 - H281DRAFT_01097 0.88 +0.6
1,234,287 - -1.4
1,234,288 + +0.0
1,234,289 - -0.2
1,234,335 - +0.0
1,234,336 + +1.6
1,234,661 - H281DRAFT_01098 0.42 -2.9
1,234,811 + H281DRAFT_01098 0.58 +0.6
1,234,903 + H281DRAFT_01098 0.68 -1.2
1,235,024 - H281DRAFT_01098 0.80 +0.4
1,235,217 + -0.9

Or see this region's nucleotide sequence