Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00752

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00749 and H281DRAFT_00750 are separated by 99 nucleotidesH281DRAFT_00750 and H281DRAFT_00751 are separated by 48 nucleotidesH281DRAFT_00751 and H281DRAFT_00752 are separated by 162 nucleotidesH281DRAFT_00752 and H281DRAFT_00753 are separated by 205 nucleotidesH281DRAFT_00753 and H281DRAFT_00754 overlap by 41 nucleotides H281DRAFT_00749: H281DRAFT_00749 - small multidrug resistance pump, at 844,159 to 844,497 _00749 H281DRAFT_00750: H281DRAFT_00750 - hypothetical protein, at 844,597 to 844,977 _00750 H281DRAFT_00751: H281DRAFT_00751 - hypothetical protein, at 845,026 to 845,217 _00751 H281DRAFT_00752: H281DRAFT_00752 - hypothetical protein, at 845,380 to 845,664 _00752 H281DRAFT_00753: H281DRAFT_00753 - Protein of unknown function (DUF1488), at 845,870 to 846,154 _00753 H281DRAFT_00754: H281DRAFT_00754 - Nucleoside-diphosphate-sugar epimerase, at 846,114 to 847,112 _00754 Position (kb) 845 846Strain fitness (log2 ratio) -2 -1 0 1 2at 844.382 kb on + strand, within H281DRAFT_00749at 844.382 kb on + strand, within H281DRAFT_00749at 844.400 kb on - strand, within H281DRAFT_00749at 844.542 kb on + strandat 844.543 kb on - strandat 844.543 kb on - strandat 844.598 kb on + strandat 844.707 kb on - strand, within H281DRAFT_00750at 844.743 kb on - strand, within H281DRAFT_00750at 844.888 kb on + strand, within H281DRAFT_00750at 844.888 kb on + strand, within H281DRAFT_00750at 845.043 kb on + strandat 845.320 kb on + strandat 845.330 kb on - strandat 845.350 kb on - strandat 845.350 kb on - strandat 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strandat 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strand, within H281DRAFT_00752at 845.416 kb on + strand, within H281DRAFT_00752at 845.417 kb on - strand, within H281DRAFT_00752at 845.494 kb on + strand, within H281DRAFT_00752at 845.495 kb on - strandat 845.632 kb on + strand, within H281DRAFT_00752at 845.688 kb on - strandat 845.792 kb on + strandat 845.798 kb on - strandat 845.798 kb on - strandat 845.798 kb on - strandat 845.798 kb on - strandat 846.061 kb on - strand, within H281DRAFT_00753at 846.206 kb on - strandat 846.294 kb on + strand, within H281DRAFT_00754at 846.295 kb on - strand, within H281DRAFT_00754at 846.385 kb on + strand, within H281DRAFT_00754at 846.385 kb on + strand, within H281DRAFT_00754at 846.386 kb on - strand, within H281DRAFT_00754at 846.452 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.505 kb on + strand, within H281DRAFT_00754at 846.529 kb on - strand, within H281DRAFT_00754at 846.576 kb on + strand, within H281DRAFT_00754at 846.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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844,382 + H281DRAFT_00749 0.66 +0.1
844,382 + H281DRAFT_00749 0.66 +1.7
844,400 - H281DRAFT_00749 0.71 -2.7
844,542 + -0.2
844,543 - -1.1
844,543 - +0.0
844,598 + -0.0
844,707 - H281DRAFT_00750 0.29 +0.4
844,743 - H281DRAFT_00750 0.38 -0.5
844,888 + H281DRAFT_00750 0.76 +1.8
844,888 + H281DRAFT_00750 0.76 +0.4
845,043 + -0.2
845,320 + -0.1
845,330 - -0.8
845,350 - +0.0
845,350 - -0.1
845,416 + H281DRAFT_00752 0.13 -1.2
845,416 + +0.9
845,416 + H281DRAFT_00752 0.13 +1.3
845,416 + H281DRAFT_00752 0.13 +0.1
845,416 + H281DRAFT_00752 0.13 +1.7
845,417 - H281DRAFT_00752 0.13 +0.3
845,494 + H281DRAFT_00752 0.40 +2.0
845,495 - -1.3
845,632 + H281DRAFT_00752 0.88 +1.2
845,688 - -0.4
845,792 + +0.1
845,798 - -0.7
845,798 - -2.4
845,798 - +0.0
845,798 - -0.0
846,061 - H281DRAFT_00753 0.67 +0.5
846,206 - +0.6
846,294 + H281DRAFT_00754 0.18 -1.6
846,295 - H281DRAFT_00754 0.18 -0.1
846,385 + H281DRAFT_00754 0.27 -0.6
846,385 + H281DRAFT_00754 0.27 +0.0
846,386 - H281DRAFT_00754 0.27 -0.6
846,452 - H281DRAFT_00754 0.34 +0.2
846,471 - H281DRAFT_00754 0.36 +0.6
846,471 - H281DRAFT_00754 0.36 +0.9
846,471 - H281DRAFT_00754 0.36 +0.5
846,505 + H281DRAFT_00754 0.39 +0.6
846,529 - H281DRAFT_00754 0.42 +0.2
846,576 + H281DRAFT_00754 0.46 +0.8
846,613 + -1.7

Or see this region's nucleotide sequence