Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00610

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00609 and H281DRAFT_00610 are separated by 469 nucleotidesH281DRAFT_00610 and H281DRAFT_00611 are separated by 202 nucleotides H281DRAFT_00609: H281DRAFT_00609 - methionine aminopeptidase, type I, at 684,311 to 685,120 _00609 H281DRAFT_00610: H281DRAFT_00610 - SSU ribosomal protein S2P, at 685,590 to 686,342 _00610 H281DRAFT_00611: H281DRAFT_00611 - translation elongation factor Ts (EF-Ts), at 686,545 to 687,426 _00611 Position (kb) 685 686 687Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 684.607 kb on - strand, within H281DRAFT_00609at 684.624 kb on + strand, within H281DRAFT_00609at 684.624 kb on + strand, within H281DRAFT_00609at 684.785 kb on - strand, within H281DRAFT_00609at 684.785 kb on - strand, within H281DRAFT_00609at 684.785 kb on - strand, within H281DRAFT_00609at 684.796 kb on - strand, within H281DRAFT_00609at 684.796 kb on - strand, within H281DRAFT_00609at 684.937 kb on - strand, within H281DRAFT_00609at 684.979 kb on - strandat 684.979 kb on - strand, within H281DRAFT_00609at 684.979 kb on - strand, within H281DRAFT_00609at 685.042 kb on - strandat 685.042 kb on - strandat 685.042 kb on - strandat 685.114 kb on + strandat 685.233 kb on + strandat 685.233 kb on + strandat 685.234 kb on - strandat 685.337 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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684,607 - H281DRAFT_00609 0.37 -0.1
684,624 + H281DRAFT_00609 0.39 -0.2
684,624 + H281DRAFT_00609 0.39 -2.1
684,785 - H281DRAFT_00609 0.59 +0.4
684,785 - H281DRAFT_00609 0.59 -3.3
684,785 - H281DRAFT_00609 0.59 +0.6
684,796 - H281DRAFT_00609 0.60 +0.0
684,796 - H281DRAFT_00609 0.60 -0.6
684,937 - H281DRAFT_00609 0.77 -0.0
684,979 - +0.6
684,979 - H281DRAFT_00609 0.82 -1.7
684,979 - H281DRAFT_00609 0.82 +0.5
685,042 - -1.3
685,042 - +1.8
685,042 - -0.7
685,114 + -1.7
685,233 + -0.0
685,233 + -0.4
685,234 - -1.8
685,337 + -2.3

Or see this region's nucleotide sequence