Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00105

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00104 and H281DRAFT_00105 overlap by 20 nucleotidesH281DRAFT_00105 and H281DRAFT_00106 are separated by 74 nucleotides H281DRAFT_00104: H281DRAFT_00104 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 108,338 to 109,825 _00104 H281DRAFT_00105: H281DRAFT_00105 - monosaccharide ABC transporter membrane protein, CUT2 family, at 109,806 to 110,819 _00105 H281DRAFT_00106: H281DRAFT_00106 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 110,894 to 111,856 _00106 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1at 108.921 kb on - strand, within H281DRAFT_00104at 109.334 kb on + strand, within H281DRAFT_00104at 109.335 kb on - strand, within H281DRAFT_00104at 109.640 kb on + strand, within H281DRAFT_00104at 109.869 kb on + strandat 109.870 kb on - strandat 110.343 kb on + strand, within H281DRAFT_00105at 110.492 kb on - strand, within H281DRAFT_00105at 110.492 kb on - strand, within H281DRAFT_00105at 110.521 kb on - strand, within H281DRAFT_00105at 110.752 kb on - strandat 110.823 kb on + strandat 111.521 kb on + strand, within H281DRAFT_00106at 111.521 kb on + strand, within H281DRAFT_00106at 111.522 kb on - strand, within H281DRAFT_00106

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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108,921 - H281DRAFT_00104 0.39 -0.2
109,334 + H281DRAFT_00104 0.67 -0.3
109,335 - H281DRAFT_00104 0.67 +0.4
109,640 + H281DRAFT_00104 0.88 -1.7
109,869 + +0.2
109,870 - -0.5
110,343 + H281DRAFT_00105 0.53 -0.3
110,492 - H281DRAFT_00105 0.68 +0.9
110,492 - H281DRAFT_00105 0.68 -0.3
110,521 - H281DRAFT_00105 0.71 +0.8
110,752 - -2.1
110,823 + +0.0
111,521 + H281DRAFT_00106 0.65 +0.6
111,521 + H281DRAFT_00106 0.65 -0.1
111,522 - H281DRAFT_00106 0.65 +0.7

Or see this region's nucleotide sequence