Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01703

Experiment: PYE 0.5x 30C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep3 28 days
1,834,096	+		CCNA_01702	0.15	-3.3
1,834,096	+		CCNA_01702	0.15	-3.0
1,834,099	-		CCNA_01702	0.15	-0.1
1,834,172	+		CCNA_01702	0.22	-0.5
1,834,181	+		CCNA_01702	0.23	-3.0
1,834,208	+		CCNA_01702	0.25	-3.7
1,834,250	+		CCNA_01702	0.29	-0.7
1,834,263	+		CCNA_01702	0.30	+0.2
1,834,267	+		CCNA_01702	0.30	-0.7
1,834,301	+		CCNA_01702	0.33	-1.3
1,834,313	+		CCNA_01702	0.34	+2.5
1,834,313	+		CCNA_01702	0.34	-1.4
1,834,318	+		CCNA_01702	0.35	-1.3
1,834,321	-		CCNA_01702	0.35	-2.5
1,834,324	+		CCNA_01702	0.35	-2.3
1,834,326	-		CCNA_01702	0.35	-1.9
1,834,326	-		CCNA_01702	0.35	+0.1
1,834,326	-		CCNA_01702	0.35	+0.1
1,834,326	-		CCNA_01702	0.35	-2.9
1,834,327	-		CCNA_01702	0.35	-1.3
1,834,327	-		CCNA_01702	0.35	+0.1
1,834,327	-		CCNA_01702	0.35	-0.7
1,834,422	+		CCNA_01702	0.44	-0.1
1,834,423	-		CCNA_01702	0.44	-1.4
1,834,517	-		CCNA_01702	0.52	-0.3
1,834,569	+		CCNA_01702	0.57	+0.1
1,834,577	-		CCNA_01702	0.58	+0.3
1,834,577	-		CCNA_01702	0.58	-1.0
1,834,626	+		CCNA_01702	0.62	-3.5
1,834,679	+		CCNA_01702	0.67	-1.3
1,834,684	+		CCNA_01702	0.67	-2.6
1,834,739	+		CCNA_01702	0.72	-4.0
1,834,739	+		CCNA_01702	0.72	-2.3
1,834,752	-		CCNA_01702	0.73	-1.8
1,834,760	+		CCNA_01702	0.74	-2.5
1,834,788	-		CCNA_01702	0.76	-2.7
1,834,793	+		CCNA_01702	0.77	-2.0
1,834,827	+		CCNA_01702	0.80	-1.4
1,834,928	+		CCNA_01702	0.89	+0.4
1,834,928	+		CCNA_01702	0.89	-1.2
1,834,936	-		CCNA_01702	0.89	-3.5
1,834,936	-		CCNA_01702	0.89	+1.5
1,834,955	-				+0.5
1,834,960	-				+2.5
1,834,984	+				-1.3
1,834,986	+				+2.5
1,834,987	-				-1.4
1,834,994	-				-0.5
1,834,994	-				+0.1
1,835,048	-				-0.9
1,835,053	-				-1.5
1,835,055	+				-0.7
1,835,063	-				-2.4
1,835,118	-				-2.4
1,835,123	+				-0.6
1,835,124	+				-3.7
1,835,152	+				-2.8
1,835,160	-				-1.9
1,835,160	-				+0.1
1,835,160	-				-1.4
1,835,160	-				-2.8
1,835,197	-		CCNA_01703	0.13	-2.2
1,835,201	+		CCNA_01703	0.14	+0.1
1,835,277	+		CCNA_01703	0.21	-1.6
1,835,382	+		CCNA_01703	0.31	-2.0
1,835,400	-		CCNA_01703	0.33	-1.4
1,835,405	-		CCNA_01703	0.33	+0.1
1,835,405	-		CCNA_01703	0.33	+0.9
1,835,415	+		CCNA_01703	0.34	-2.2
1,835,415	+		CCNA_01703	0.34	-2.0
1,835,415	+		CCNA_01703	0.34	-3.1
1,835,415	+		CCNA_01703	0.34	-3.2
1,835,415	+		CCNA_01703	0.34	-1.8
1,835,423	-		CCNA_01703	0.35	-1.4
1,835,423	-		CCNA_01703	0.35	-2.0
1,835,436	-		CCNA_01703	0.36	-2.4
1,835,479	+		CCNA_01703	0.40	-2.1
1,835,479	+		CCNA_01703	0.40	-2.3
1,835,497	+		CCNA_01703	0.42	-1.6
1,835,503	-		CCNA_01703	0.42	-2.0
1,835,503	-		CCNA_01703	0.42	-1.7
1,835,600	-		CCNA_01703	0.52	-2.1
1,835,753	-		CCNA_01703	0.66	+0.9
1,835,772	+		CCNA_01703	0.68	-1.0
1,835,772	+		CCNA_01703	0.68	-1.6
1,835,772	+		CCNA_01703	0.68	-0.4
1,835,780	-		CCNA_01703	0.69	-2.6
1,835,780	-		CCNA_01703	0.69	-0.5
1,835,780	-		CCNA_01703	0.69	-1.8
1,835,802	+		CCNA_01703	0.71	-2.0
1,835,837	-		CCNA_01703	0.74	-1.7
1,835,839	+		CCNA_01703	0.74	-1.5
1,835,839	+		CCNA_01703	0.74	-2.1
1,835,847	-		CCNA_01703	0.75	+3.5
1,835,863	+		CCNA_01703	0.76	-2.3
1,835,876	-		CCNA_01703	0.78	+0.5
1,835,912	+		CCNA_01703	0.81	-2.4
1,835,936	-		CCNA_01703	0.83	+0.9
1,835,936	-		CCNA_01703	0.83	-0.4
1,835,950	+				-2.4
1,835,950	+		CCNA_01703	0.85	-1.7
1,835,950	+		CCNA_01703	0.85	-0.5
1,835,950	+		CCNA_01703	0.85	+0.1
1,835,950	+		CCNA_01703	0.85	+0.2
1,835,950	+		CCNA_01703	0.85	-1.7
1,835,958	-		CCNA_01703	0.85	-2.0
1,835,958	-		CCNA_01703	0.85	+2.5
1,835,958	-		CCNA_01703	0.85	+2.5
1,835,958	-		CCNA_01703	0.85	+0.1
1,835,964	-		CCNA_01703	0.86	-0.9
1,836,055	-				+2.5
1,836,074	-				-1.8
1,836,111	+				+1.5
1,836,111	+				+0.8
1,836,111	-				-0.9
1,836,119	-				-1.7
1,836,158	+				-0.6
1,836,178	+		CCNA_01704	0.11	-0.1
1,836,179	-		CCNA_01704	0.11	+0.5
1,836,183	+		CCNA_01704	0.12	-0.3
1,836,217	-		CCNA_01704	0.21	-0.5
1,836,285	-		CCNA_01704	0.40	+2.0
1,836,291	-		CCNA_01704	0.42	+2.5
1,836,298	+		CCNA_01704	0.44	+1.6
1,836,330	+		CCNA_01704	0.53	-0.2
1,836,332	-		CCNA_01704	0.53	-0.4
1,836,343	+		CCNA_01704	0.56	+1.3
1,836,351	-		CCNA_01704	0.58	+1.9
1,836,419	-		CCNA_01704	0.77	-2.8
1,836,435	+		CCNA_01704	0.82	+1.9
1,836,447	+		CCNA_01704	0.85	+1.5
1,836,469	+				+0.6
1,836,474	-				+0.1
1,836,486	-				-1.9
1,836,524	-				-0.5
1,836,614	-				+0.9
1,836,614	-				-0.0
1,836,620	+				+0.6
1,836,620	+				+0.3
1,836,649	+				-0.5
1,836,696	+				+0.6
1,836,696	+				-1.4
1,836,704	-				+1.0
1,836,704	-				+1.9
1,836,761	-				-0.7
1,836,794	-				-0.1
1,836,810	+		CCNA_01705	0.11	-1.2
1,836,829	+		CCNA_01705	0.13	-2.5
1,836,829	+		CCNA_01705	0.13	-0.1
1,836,830	+		CCNA_01705	0.13	-0.1
1,836,830	+		CCNA_01705	0.13	-0.9
1,836,830	+		CCNA_01705	0.13	-1.1
1,836,830	+		CCNA_01705	0.13	+2.5
1,836,835	+		CCNA_01705	0.13	-0.7
1,836,838	-		CCNA_01705	0.14	+0.6
1,836,843	-		CCNA_01705	0.14	-1.4
1,836,855	-		CCNA_01705	0.16	+1.3
1,836,874	-		CCNA_01705	0.18	+0.2
1,836,941	+		CCNA_01705	0.26	-1.9
1,836,942	+		CCNA_01705	0.26	+0.5
1,836,942	+		CCNA_01705	0.26	-0.4
1,836,942	+		CCNA_01705	0.26	+0.1
1,836,949	-		CCNA_01705	0.27	-1.2
1,836,949	-		CCNA_01705	0.27	-0.0
1,837,010	+		CCNA_01705	0.34	+1.1
1,837,011	+		CCNA_01705	0.34	-2.6
1,837,018	-		CCNA_01705	0.35	+2.2
1,837,081	+		CCNA_01705	0.43	-1.2
1,837,101	+		CCNA_01705	0.45	-0.5
1,837,101	+		CCNA_01705	0.45	+0.8