Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00657

Experiment: PYE 0.5x 30C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00656 and CCNA_00657 overlap by 4 nucleotidesCCNA_00657 and CCNA_00658 overlap by 4 nucleotides CCNA_00656: CCNA_00656 - type I restriction-modification system methylation subunit, at 710,696 to 712,531 _00656 CCNA_00657: CCNA_00657 - type I restriction-modification system specificity subunit, at 712,528 to 713,880 _00657 CCNA_00658: CCNA_00658 - 5-methylcytosine-specific restriction enzyme MRR, at 713,877 to 714,920 _00658 Position (kb) 712 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 711.531 kb on + strand, within CCNA_00656at 711.538 kb on - strand, within CCNA_00656at 711.558 kb on + strand, within CCNA_00656at 711.568 kb on + strand, within CCNA_00656at 711.575 kb on + strand, within CCNA_00656at 711.600 kb on - strand, within CCNA_00656at 711.605 kb on - strand, within CCNA_00656at 711.610 kb on + strand, within CCNA_00656at 711.610 kb on - strand, within CCNA_00656at 711.611 kb on + strand, within CCNA_00656at 711.618 kb on - strand, within CCNA_00656at 711.625 kb on + strand, within CCNA_00656at 711.630 kb on + strand, within CCNA_00656at 711.630 kb on + strand, within CCNA_00656at 711.630 kb on + strand, within CCNA_00656at 711.659 kb on + strand, within CCNA_00656at 711.685 kb on + strand, within CCNA_00656at 711.685 kb on + strand, within CCNA_00656at 711.729 kb on - strand, within CCNA_00656at 711.729 kb on - strand, within CCNA_00656at 711.731 kb on + strand, within CCNA_00656at 711.731 kb on + strand, within CCNA_00656at 711.731 kb on + strand, within CCNA_00656at 711.731 kb on + strand, within CCNA_00656at 711.739 kb on - strand, within CCNA_00656at 711.739 kb on - strand, within CCNA_00656at 711.739 kb on - strand, within CCNA_00656at 711.759 kb on - strand, within CCNA_00656at 711.763 kb on + strand, within CCNA_00656at 711.779 kb on + strand, within CCNA_00656at 711.797 kb on - strand, within CCNA_00656at 711.807 kb on - strand, within CCNA_00656at 711.810 kb on + strand, within CCNA_00656at 711.823 kb on - strand, within CCNA_00656at 711.842 kb on + strand, within CCNA_00656at 711.936 kb on - strand, within CCNA_00656at 711.972 kb on + strand, within CCNA_00656at 711.972 kb on - strand, within CCNA_00656at 711.979 kb on + strand, within CCNA_00656at 712.014 kb on + strand, within CCNA_00656at 712.024 kb on + strand, within CCNA_00656at 712.044 kb on - strand, within CCNA_00656at 712.046 kb on + strand, within CCNA_00656at 712.054 kb on - strand, within CCNA_00656at 712.068 kb on - strand, within CCNA_00656at 712.080 kb on - strand, within CCNA_00656at 712.090 kb on + strand, within CCNA_00656at 712.090 kb on + strand, within CCNA_00656at 712.090 kb on + strand, within CCNA_00656at 712.115 kb on + strand, within CCNA_00656at 712.115 kb on - strand, within CCNA_00656at 712.141 kb on + strand, within CCNA_00656at 712.141 kb on + strand, within CCNA_00656at 712.141 kb on + strand, within CCNA_00656at 712.149 kb on - strand, within CCNA_00656at 712.159 kb on + strand, within CCNA_00656at 712.159 kb on + strand, within CCNA_00656at 712.159 kb on + strand, within CCNA_00656at 712.159 kb on + strand, within CCNA_00656at 712.159 kb on + strand, within CCNA_00656at 712.159 kb on + strand, within CCNA_00656at 712.159 kb on + strand, within CCNA_00656at 712.167 kb on - strand, within CCNA_00656at 712.167 kb on - strand, within CCNA_00656at 712.182 kb on + strand, within CCNA_00656at 712.217 kb on + strand, within CCNA_00656at 712.236 kb on + strand, within CCNA_00656at 712.255 kb on + strand, within CCNA_00656at 712.261 kb on + strand, within CCNA_00656at 712.261 kb on + strand, within CCNA_00656at 712.273 kb on + strand, within CCNA_00656at 712.281 kb on - strand, within CCNA_00656at 712.326 kb on - strand, within CCNA_00656at 712.352 kb on + strandat 712.360 kb on - strandat 712.360 kb on - strandat 712.393 kb on + strandat 712.401 kb on - strandat 712.401 kb on - strandat 712.401 kb on - strandat 712.401 kb on - strandat 712.401 kb on - strandat 712.402 kb on - strandat 712.465 kb on + strandat 712.465 kb on + strandat 712.493 kb on + strandat 712.493 kb on + strandat 712.498 kb on + strandat 712.498 kb on + strandat 712.498 kb on + strandat 712.498 kb on + strandat 712.498 kb on + strandat 712.506 kb on - strandat 712.506 kb on - strandat 712.530 kb on - strandat 712.533 kb on - strandat 712.558 kb on - strandat 712.568 kb on - strandat 712.585 kb on + strandat 712.592 kb on - strandat 712.618 kb on - strandat 712.628 kb on - strandat 712.676 kb on - strand, within CCNA_00657at 712.707 kb on + strand, within CCNA_00657at 712.725 kb on + strand, within CCNA_00657at 712.737 kb on + strand, within CCNA_00657at 712.742 kb on + strand, within CCNA_00657at 712.745 kb on - strand, within CCNA_00657at 712.774 kb on + strand, within CCNA_00657at 712.774 kb on + strand, within CCNA_00657at 712.782 kb on - strand, within CCNA_00657at 712.827 kb on + strand, within CCNA_00657at 712.874 kb on + strand, within CCNA_00657at 712.882 kb on - strand, within CCNA_00657at 712.887 kb on - strand, within CCNA_00657at 712.898 kb on - strand, within CCNA_00657at 712.898 kb on - strand, within CCNA_00657at 712.921 kb on + strand, within CCNA_00657at 712.996 kb on - strand, within CCNA_00657at 713.003 kb on + strand, within CCNA_00657at 713.003 kb on + strand, within CCNA_00657at 713.011 kb on - strand, within CCNA_00657at 713.040 kb on + strand, within CCNA_00657at 713.050 kb on + strand, within CCNA_00657at 713.066 kb on - strand, within CCNA_00657at 713.079 kb on - strand, within CCNA_00657at 713.114 kb on - strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.144 kb on - strand, within CCNA_00657at 713.144 kb on - strand, within CCNA_00657at 713.144 kb on - strand, within CCNA_00657at 713.144 kb on - strand, within CCNA_00657at 713.183 kb on + strand, within CCNA_00657at 713.183 kb on + strand, within CCNA_00657at 713.183 kb on + strand, within CCNA_00657at 713.183 kb on + strand, within CCNA_00657at 713.202 kb on + strand, within CCNA_00657at 713.203 kb on + strand, within CCNA_00657at 713.216 kb on + strand, within CCNA_00657at 713.479 kb on + strand, within CCNA_00657at 713.507 kb on + strand, within CCNA_00657at 713.515 kb on - strand, within CCNA_00657at 713.515 kb on - strand, within CCNA_00657at 713.517 kb on - strand, within CCNA_00657at 713.543 kb on + strand, within CCNA_00657at 713.543 kb on + strand, within CCNA_00657at 713.551 kb on - strand, within CCNA_00657at 713.574 kb on + strand, within CCNA_00657at 713.605 kb on - strand, within CCNA_00657at 713.675 kb on + strand, within CCNA_00657at 713.737 kb on + strand, within CCNA_00657at 713.776 kb on - strandat 713.790 kb on + strandat 713.790 kb on + strandat 713.809 kb on + strandat 713.809 kb on + strandat 713.809 kb on + strandat 713.809 kb on + strandat 713.814 kb on + strandat 713.817 kb on - strandat 713.852 kb on + strandat 713.856 kb on + strandat 713.884 kb on + strandat 713.885 kb on + strandat 713.893 kb on - strandat 713.893 kb on - strandat 713.893 kb on - strandat 713.940 kb on - strandat 713.976 kb on + strandat 713.984 kb on - strand, within CCNA_00658at 713.986 kb on + strand, within CCNA_00658at 714.003 kb on - strand, within CCNA_00658at 714.044 kb on + strand, within CCNA_00658at 714.077 kb on - strand, within CCNA_00658at 714.111 kb on + strand, within CCNA_00658at 714.132 kb on + strand, within CCNA_00658at 714.132 kb on + strand, within CCNA_00658at 714.175 kb on + strand, within CCNA_00658at 714.253 kb on + strand, within CCNA_00658at 714.254 kb on - strand, within CCNA_00658at 714.255 kb on - strand, within CCNA_00658at 714.261 kb on - strand, within CCNA_00658at 714.261 kb on - strand, within CCNA_00658at 714.261 kb on - strand, within CCNA_00658at 714.272 kb on + strand, within CCNA_00658at 714.289 kb on - strand, within CCNA_00658at 714.308 kb on + strand, within CCNA_00658at 714.315 kb on + strand, within CCNA_00658at 714.315 kb on + strand, within CCNA_00658at 714.323 kb on - strandat 714.326 kb on + strand, within CCNA_00658at 714.333 kb on - strand, within CCNA_00658at 714.333 kb on - strand, within CCNA_00658at 714.336 kb on + strand, within CCNA_00658at 714.336 kb on + strand, within CCNA_00658at 714.338 kb on + strand, within CCNA_00658at 714.338 kb on + strand, within CCNA_00658at 714.380 kb on + strand, within CCNA_00658at 714.400 kb on - strand, within CCNA_00658at 714.419 kb on + strand, within CCNA_00658at 714.448 kb on - strand, within CCNA_00658at 714.449 kb on - strand, within CCNA_00658at 714.476 kb on + strand, within CCNA_00658at 714.484 kb on - strand, within CCNA_00658at 714.484 kb on - strand, within CCNA_00658at 714.496 kb on + strand, within CCNA_00658at 714.506 kb on + strand, within CCNA_00658at 714.528 kb on - strand, within CCNA_00658at 714.552 kb on - strand, within CCNA_00658at 714.562 kb on - strand, within CCNA_00658at 714.567 kb on + strand, within CCNA_00658at 714.575 kb on + strand, within CCNA_00658at 714.618 kb on + strand, within CCNA_00658at 714.675 kb on - strand, within CCNA_00658at 714.744 kb on - strand, within CCNA_00658at 714.755 kb on - strand, within CCNA_00658at 714.782 kb on + strand, within CCNA_00658at 714.816 kb on - strandat 714.825 kb on + strandat 714.825 kb on + strandat 714.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 28 days
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711,531 + CCNA_00656 0.45 +0.4
711,538 - CCNA_00656 0.46 -1.0
711,558 + CCNA_00656 0.47 -0.7
711,568 + CCNA_00656 0.47 +0.8
711,575 + CCNA_00656 0.48 +0.4
711,600 - CCNA_00656 0.49 -0.9
711,605 - CCNA_00656 0.50 +0.5
711,610 + CCNA_00656 0.50 +1.0
711,610 - CCNA_00656 0.50 -0.6
711,611 + CCNA_00656 0.50 +0.0
711,618 - CCNA_00656 0.50 +0.1
711,625 + CCNA_00656 0.51 +0.2
711,630 + CCNA_00656 0.51 +0.6
711,630 + CCNA_00656 0.51 +1.4
711,630 + CCNA_00656 0.51 +0.4
711,659 + CCNA_00656 0.52 +0.7
711,685 + CCNA_00656 0.54 +0.9
711,685 + CCNA_00656 0.54 +0.4
711,729 - CCNA_00656 0.56 -0.7
711,729 - CCNA_00656 0.56 +0.1
711,731 + CCNA_00656 0.56 +0.6
711,731 + CCNA_00656 0.56 +0.5
711,731 + CCNA_00656 0.56 +1.4
711,731 + CCNA_00656 0.56 -0.5
711,739 - CCNA_00656 0.57 -1.9
711,739 - CCNA_00656 0.57 +0.3
711,739 - CCNA_00656 0.57 +1.2
711,759 - CCNA_00656 0.58 +1.0
711,763 + CCNA_00656 0.58 -0.0
711,779 + CCNA_00656 0.59 -0.7
711,797 - CCNA_00656 0.60 -2.1
711,807 - CCNA_00656 0.61 +4.0
711,810 + CCNA_00656 0.61 +0.6
711,823 - CCNA_00656 0.61 +1.4
711,842 + CCNA_00656 0.62 +1.1
711,936 - CCNA_00656 0.68 -1.5
711,972 + CCNA_00656 0.69 -1.0
711,972 - CCNA_00656 0.69 -1.9
711,979 + CCNA_00656 0.70 -0.6
712,014 + CCNA_00656 0.72 +0.6
712,024 + CCNA_00656 0.72 -0.8
712,044 - CCNA_00656 0.73 +2.4
712,046 + CCNA_00656 0.74 +2.1
712,054 - CCNA_00656 0.74 -0.9
712,068 - CCNA_00656 0.75 +0.4
712,080 - CCNA_00656 0.75 -1.2
712,090 + CCNA_00656 0.76 +0.5
712,090 + CCNA_00656 0.76 +1.3
712,090 + CCNA_00656 0.76 +1.5
712,115 + CCNA_00656 0.77 +0.9
712,115 - CCNA_00656 0.77 +1.2
712,141 + CCNA_00656 0.79 -0.7
712,141 + CCNA_00656 0.79 +0.1
712,141 + CCNA_00656 0.79 -0.5
712,149 - CCNA_00656 0.79 -1.5
712,159 + CCNA_00656 0.80 +0.6
712,159 + CCNA_00656 0.80 -0.0
712,159 + CCNA_00656 0.80 -0.4
712,159 + CCNA_00656 0.80 -0.2
712,159 + CCNA_00656 0.80 +1.3
712,159 + CCNA_00656 0.80 -0.7
712,159 + CCNA_00656 0.80 -0.1
712,167 - CCNA_00656 0.80 +2.0
712,167 - CCNA_00656 0.80 +0.6
712,182 + CCNA_00656 0.81 -1.8
712,217 + CCNA_00656 0.83 +1.8
712,236 + CCNA_00656 0.84 +1.4
712,255 + CCNA_00656 0.85 -0.4
712,261 + CCNA_00656 0.85 +0.5
712,261 + CCNA_00656 0.85 +1.4
712,273 + CCNA_00656 0.86 -2.0
712,281 - CCNA_00656 0.86 -1.7
712,326 - CCNA_00656 0.89 +1.8
712,352 + +0.9
712,360 - -1.9
712,360 - +0.8
712,393 + +0.6
712,401 - -1.1
712,401 - +0.3
712,401 - -0.8
712,401 - -1.8
712,401 - +1.0
712,402 - -1.0
712,465 + +0.2
712,465 + +1.0
712,493 + +0.9
712,493 + -0.8
712,498 + +0.8
712,498 + +0.4
712,498 + -0.5
712,498 + +2.1
712,498 + -0.9
712,506 - +0.4
712,506 - +0.1
712,530 - -0.8
712,533 - +1.4
712,558 - -1.3
712,568 - -2.8
712,585 + -0.9
712,592 - -1.3
712,618 - -0.4
712,628 - -0.1
712,676 - CCNA_00657 0.11 -0.4
712,707 + CCNA_00657 0.13 +0.4
712,725 + CCNA_00657 0.15 +1.0
712,737 + CCNA_00657 0.15 +0.6
712,742 + CCNA_00657 0.16 +2.1
712,745 - CCNA_00657 0.16 -0.8
712,774 + CCNA_00657 0.18 +0.9
712,774 + CCNA_00657 0.18 +1.4
712,782 - CCNA_00657 0.19 -2.6
712,827 + CCNA_00657 0.22 -0.4
712,874 + CCNA_00657 0.26 +2.0
712,882 - CCNA_00657 0.26 +1.4
712,887 - CCNA_00657 0.27 +2.4
712,898 - CCNA_00657 0.27 -2.0
712,898 - CCNA_00657 0.27 -1.6
712,921 + CCNA_00657 0.29 -0.9
712,996 - CCNA_00657 0.35 -1.9
713,003 + CCNA_00657 0.35 +0.4
713,003 + CCNA_00657 0.35 +1.3
713,011 - CCNA_00657 0.36 +0.1
713,040 + CCNA_00657 0.38 +1.6
713,050 + CCNA_00657 0.39 +1.4
713,066 - CCNA_00657 0.40 +1.0
713,079 - CCNA_00657 0.41 -0.4
713,114 - CCNA_00657 0.43 +2.4
713,136 + CCNA_00657 0.45 +0.4
713,136 + CCNA_00657 0.45 -0.9
713,136 + CCNA_00657 0.45 -0.7
713,136 + CCNA_00657 0.45 -0.7
713,136 + CCNA_00657 0.45 +0.7
713,136 + CCNA_00657 0.45 -0.4
713,136 + CCNA_00657 0.45 +0.4
713,136 + CCNA_00657 0.45 -0.3
713,136 + CCNA_00657 0.45 +0.5
713,144 - CCNA_00657 0.46 +2.4
713,144 - CCNA_00657 0.46 +0.1
713,144 - CCNA_00657 0.46 +2.4
713,144 - CCNA_00657 0.46 +0.1
713,183 + CCNA_00657 0.48 +0.7
713,183 + CCNA_00657 0.48 +0.4
713,183 + CCNA_00657 0.48 -0.5
713,183 + CCNA_00657 0.48 +3.5
713,202 + CCNA_00657 0.50 +0.2
713,203 + CCNA_00657 0.50 -0.6
713,216 + CCNA_00657 0.51 +1.1
713,479 + CCNA_00657 0.70 +2.4
713,507 + CCNA_00657 0.72 -0.4
713,515 - CCNA_00657 0.73 -0.6
713,515 - CCNA_00657 0.73 +0.4
713,517 - CCNA_00657 0.73 -1.4
713,543 + CCNA_00657 0.75 -0.1
713,543 + CCNA_00657 0.75 -0.6
713,551 - CCNA_00657 0.76 +0.8
713,574 + CCNA_00657 0.77 -0.2
713,605 - CCNA_00657 0.80 -1.2
713,675 + CCNA_00657 0.85 -0.5
713,737 + CCNA_00657 0.89 +2.3
713,776 - +0.4
713,790 + -0.1
713,790 + -0.8
713,809 + -0.0
713,809 + +0.8
713,809 + +0.8
713,809 + -2.2
713,814 + -0.2
713,817 - -1.3
713,852 + +0.9
713,856 + -1.4
713,884 + -1.5
713,885 + -2.5
713,893 - -0.9
713,893 - +0.8
713,893 - +0.4
713,940 - -0.2
713,976 + +2.4
713,984 - CCNA_00658 0.10 +0.4
713,986 + CCNA_00658 0.10 +1.1
714,003 - CCNA_00658 0.12 +1.4
714,044 + CCNA_00658 0.16 -0.6
714,077 - CCNA_00658 0.19 -0.8
714,111 + CCNA_00658 0.22 +0.6
714,132 + CCNA_00658 0.24 -0.7
714,132 + CCNA_00658 0.24 -0.7
714,175 + CCNA_00658 0.29 +0.7
714,253 + CCNA_00658 0.36 -2.3
714,254 - CCNA_00658 0.36 +0.5
714,255 - CCNA_00658 0.36 +0.8
714,261 - CCNA_00658 0.37 -1.9
714,261 - CCNA_00658 0.37 -0.4
714,261 - CCNA_00658 0.37 -1.6
714,272 + CCNA_00658 0.38 +0.4
714,289 - CCNA_00658 0.39 -1.5
714,308 + CCNA_00658 0.41 -0.1
714,315 + CCNA_00658 0.42 +1.4
714,315 + CCNA_00658 0.42 +3.0
714,323 - -0.4
714,326 + CCNA_00658 0.43 +1.4
714,333 - CCNA_00658 0.44 -1.9
714,333 - CCNA_00658 0.44 +0.3
714,336 + CCNA_00658 0.44 +1.7
714,336 + CCNA_00658 0.44 +1.4
714,338 + CCNA_00658 0.44 -1.2
714,338 + CCNA_00658 0.44 +1.0
714,380 + CCNA_00658 0.48 -3.6
714,400 - CCNA_00658 0.50 +0.5
714,419 + CCNA_00658 0.52 -1.7
714,448 - CCNA_00658 0.55 -3.7
714,449 - CCNA_00658 0.55 -0.8
714,476 + CCNA_00658 0.57 +1.2
714,484 - CCNA_00658 0.58 +0.8
714,484 - CCNA_00658 0.58 -1.3
714,496 + CCNA_00658 0.59 -0.7
714,506 + CCNA_00658 0.60 +0.3
714,528 - CCNA_00658 0.62 +0.3
714,552 - CCNA_00658 0.65 -0.1
714,562 - CCNA_00658 0.66 -0.9
714,567 + CCNA_00658 0.66 +1.0
714,575 + CCNA_00658 0.67 +0.5
714,618 + CCNA_00658 0.71 +0.2
714,675 - CCNA_00658 0.76 -0.5
714,744 - CCNA_00658 0.83 +1.6
714,755 - CCNA_00658 0.84 -0.2
714,782 + CCNA_00658 0.87 -2.0
714,816 - -0.9
714,825 + -1.7
714,825 + -0.9
714,846 - -0.8

Or see this region's nucleotide sequence