Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00365

Experiment: PYE 0.5x 30C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00364 and CCNA_00365 are separated by 122 nucleotidesCCNA_00365 and CCNA_00366 are separated by 353 nucleotides CCNA_00364: CCNA_00364 - deoxyhypusine synthase, at 380,179 to 381,273 _00364 CCNA_00365: CCNA_00365 - ornithine decarboxylase, at 381,396 to 382,655 _00365 CCNA_00366: CCNA_00366 - phosphonates transport ATP-binding protein phnC, at 383,009 to 383,803 _00366 Position (kb) 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 381.303 kb on - strandat 381.303 kb on - strandat 381.303 kb on - strandat 381.303 kb on - strandat 381.365 kb on - strandat 381.365 kb on - strandat 381.435 kb on - strandat 381.459 kb on - strandat 381.459 kb on - strandat 382.667 kb on - strandat 382.686 kb on - strandat 382.712 kb on - strandat 382.712 kb on - strandat 382.720 kb on - strandat 382.720 kb on - strandat 382.731 kb on - strandat 382.731 kb on - strandat 382.794 kb on + strandat 382.801 kb on - strandat 382.802 kb on - strandat 382.841 kb on + strandat 382.841 kb on + strandat 382.898 kb on + strandat 382.898 kb on + strandat 382.898 kb on + strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.915 kb on - strandat 382.932 kb on + strandat 382.984 kb on - strandat 382.988 kb on + strandat 383.008 kb on - strandat 383.014 kb on + strandat 383.127 kb on + strand, within CCNA_00366at 383.145 kb on - strand, within CCNA_00366at 383.150 kb on + strand, within CCNA_00366at 383.163 kb on - strand, within CCNA_00366at 383.178 kb on + strand, within CCNA_00366at 383.179 kb on - strand, within CCNA_00366at 383.179 kb on - strand, within CCNA_00366at 383.186 kb on - strand, within CCNA_00366at 383.186 kb on - strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.230 kb on - strand, within CCNA_00366at 383.274 kb on - strand, within CCNA_00366at 383.292 kb on + strand, within CCNA_00366at 383.300 kb on - strand, within CCNA_00366at 383.320 kb on + strand, within CCNA_00366at 383.320 kb on + strand, within CCNA_00366at 383.353 kb on + strand, within CCNA_00366at 383.361 kb on - strand, within CCNA_00366at 383.361 kb on - strand, within CCNA_00366at 383.363 kb on + strand, within CCNA_00366at 383.365 kb on - strand, within CCNA_00366at 383.372 kb on + strand, within CCNA_00366at 383.406 kb on + strandat 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.427 kb on + strand, within CCNA_00366at 383.460 kb on + strand, within CCNA_00366at 383.491 kb on - strand, within CCNA_00366at 383.493 kb on + strand, within CCNA_00366at 383.495 kb on + strand, within CCNA_00366at 383.520 kb on - strand, within CCNA_00366at 383.520 kb on - strand, within CCNA_00366at 383.521 kb on + strand, within CCNA_00366at 383.546 kb on + strand, within CCNA_00366at 383.582 kb on + strand, within CCNA_00366at 383.590 kb on - strand, within CCNA_00366at 383.605 kb on + strand, within CCNA_00366at 383.618 kb on + strand, within CCNA_00366at 383.626 kb on - strand, within CCNA_00366at 383.636 kb on + strand, within CCNA_00366at 383.639 kb on - strand, within CCNA_00366at 383.644 kb on + strand, within CCNA_00366at 383.644 kb on - strand, within CCNA_00366at 383.650 kb on + strand, within CCNA_00366

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 28 days
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381,303 - -0.5
381,303 - -0.2
381,303 - +0.6
381,303 - +0.7
381,365 - +1.2
381,365 - -0.6
381,435 - +3.0
381,459 - -0.2
381,459 - +0.4
382,667 - +1.7
382,686 - +1.6
382,712 - +1.1
382,712 - -0.1
382,720 - +0.4
382,720 - +0.7
382,731 - +0.8
382,731 - +1.4
382,794 + -2.3
382,801 - -1.3
382,802 - -0.6
382,841 + -1.4
382,841 + +1.8
382,898 + +0.7
382,898 + -2.9
382,898 + -2.7
382,906 - -0.0
382,906 - +0.2
382,906 - -3.0
382,906 - +1.0
382,906 - +0.5
382,906 - +2.0
382,906 - -1.3
382,915 - +1.8
382,932 + +0.6
382,984 - +0.4
382,988 + +0.0
383,008 - -2.9
383,014 + -1.0
383,127 + CCNA_00366 0.15 -0.8
383,145 - CCNA_00366 0.17 -0.3
383,150 + CCNA_00366 0.18 -0.4
383,163 - CCNA_00366 0.19 -0.8
383,178 + CCNA_00366 0.21 +0.0
383,179 - CCNA_00366 0.21 -3.1
383,179 - CCNA_00366 0.21 +0.6
383,186 - CCNA_00366 0.22 -2.3
383,186 - CCNA_00366 0.22 -2.4
383,222 + CCNA_00366 0.27 -0.4
383,222 + CCNA_00366 0.27 -0.0
383,222 + CCNA_00366 0.27 -0.3
383,222 + CCNA_00366 0.27 +1.3
383,230 - CCNA_00366 0.28 -1.7
383,274 - CCNA_00366 0.33 -0.8
383,292 + CCNA_00366 0.36 -2.0
383,300 - CCNA_00366 0.37 -3.0
383,320 + CCNA_00366 0.39 -0.1
383,320 + CCNA_00366 0.39 +0.8
383,353 + CCNA_00366 0.43 -1.1
383,361 - CCNA_00366 0.44 -0.0
383,361 - CCNA_00366 0.44 -0.6
383,363 + CCNA_00366 0.45 -0.9
383,365 - CCNA_00366 0.45 -0.0
383,372 + CCNA_00366 0.46 -2.1
383,406 + -2.2
383,417 + CCNA_00366 0.51 -0.7
383,417 + CCNA_00366 0.51 -0.5
383,417 + CCNA_00366 0.51 -1.5
383,417 + CCNA_00366 0.51 -0.1
383,427 + CCNA_00366 0.53 +0.4
383,460 + CCNA_00366 0.57 +0.4
383,491 - CCNA_00366 0.61 -1.6
383,493 + CCNA_00366 0.61 -0.1
383,495 + CCNA_00366 0.61 +1.3
383,520 - CCNA_00366 0.64 -2.8
383,520 - CCNA_00366 0.64 -1.4
383,521 + CCNA_00366 0.64 +0.5
383,546 + CCNA_00366 0.68 -1.4
383,582 + CCNA_00366 0.72 +0.4
383,590 - CCNA_00366 0.73 -0.7
383,605 + CCNA_00366 0.75 +1.6
383,618 + CCNA_00366 0.77 -0.9
383,626 - CCNA_00366 0.78 -2.7
383,636 + CCNA_00366 0.79 -0.7
383,639 - CCNA_00366 0.79 -0.7
383,644 + CCNA_00366 0.80 -1.0
383,644 - CCNA_00366 0.80 -1.3
383,650 + CCNA_00366 0.81 +0.2

Or see this region's nucleotide sequence