Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00025

Experiment: PYE 0.5x 30C survival rep3 28 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00023 and CCNA_00024 are separated by 16 nucleotidesCCNA_00024 and CCNA_00025 are separated by 9 nucleotidesCCNA_00025 and CCNA_00026 are separated by 57 nucleotides CCNA_00023: CCNA_00023 - putative periplasmic protein, at 23,742 to 24,074 _00023 CCNA_00024: CCNA_00024 - uroporphyrin-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase, at 24,091 to 24,981 _00024 CCNA_00025: CCNA_00025 - major facilitator superfamily transporter, at 24,991 to 26,643 _00025 CCNA_00026: CCNA_00026 - PAS-family sensor histidine kinase, at 26,701 to 29,403 _00026 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 23.993 kb on + strand, within CCNA_00023at 24.001 kb on - strand, within CCNA_00023at 24.019 kb on - strand, within CCNA_00023at 24.020 kb on - strand, within CCNA_00023at 24.041 kb on - strandat 24.075 kb on + strandat 24.083 kb on - strandat 24.165 kb on + strandat 24.240 kb on + strand, within CCNA_00024at 24.283 kb on - strand, within CCNA_00024at 24.322 kb on + strand, within CCNA_00024at 24.322 kb on + strand, within CCNA_00024at 24.328 kb on - strand, within CCNA_00024at 24.358 kb on - strand, within CCNA_00024at 24.443 kb on + strand, within CCNA_00024at 24.444 kb on - strand, within CCNA_00024at 24.492 kb on - strand, within CCNA_00024at 24.492 kb on - strand, within CCNA_00024at 24.516 kb on + strand, within CCNA_00024at 24.516 kb on + strand, within CCNA_00024at 24.524 kb on - strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024at 24.563 kb on + strand, within CCNA_00024at 24.629 kb on + strand, within CCNA_00024at 24.660 kb on - strand, within CCNA_00024at 24.666 kb on - strand, within CCNA_00024at 24.675 kb on + strand, within CCNA_00024at 24.698 kb on - strand, within CCNA_00024at 24.795 kb on + strand, within CCNA_00024at 24.848 kb on + strand, within CCNA_00024at 24.856 kb on - strand, within CCNA_00024at 24.857 kb on + strand, within CCNA_00024at 24.920 kb on - strandat 24.925 kb on + strandat 24.932 kb on + strandat 24.936 kb on + strandat 24.940 kb on - strandat 24.942 kb on + strandat 24.969 kb on - strandat 24.978 kb on - strandat 25.013 kb on + strandat 25.016 kb on - strandat 25.043 kb on + strandat 25.048 kb on + strandat 25.053 kb on + strandat 25.060 kb on + strandat 25.061 kb on - strandat 25.061 kb on - strandat 25.075 kb on - strandat 25.082 kb on + strandat 25.082 kb on + strandat 25.082 kb on + strandat 25.090 kb on - strandat 25.117 kb on + strandat 25.123 kb on + strandat 25.126 kb on - strandat 25.128 kb on + strandat 25.128 kb on + strandat 25.135 kb on + strandat 25.160 kb on + strand, within CCNA_00025at 25.168 kb on - strand, within CCNA_00025at 25.171 kb on + strand, within CCNA_00025at 25.171 kb on + strand, within CCNA_00025at 25.176 kb on + strand, within CCNA_00025at 25.179 kb on - strand, within CCNA_00025at 25.179 kb on - strand, within CCNA_00025at 25.179 kb on - strand, within CCNA_00025at 25.179 kb on - strand, within CCNA_00025at 25.184 kb on - strand, within CCNA_00025at 25.184 kb on - strand, within CCNA_00025at 25.204 kb on + strand, within CCNA_00025at 25.204 kb on + strand, within CCNA_00025at 25.204 kb on - strand, within CCNA_00025at 25.215 kb on + strand, within CCNA_00025at 25.229 kb on + strand, within CCNA_00025at 25.237 kb on - strand, within CCNA_00025at 25.242 kb on - strand, within CCNA_00025at 25.261 kb on + strand, within CCNA_00025at 25.261 kb on + strand, within CCNA_00025at 25.274 kb on + strand, within CCNA_00025at 25.289 kb on + strand, within CCNA_00025at 25.304 kb on + strand, within CCNA_00025at 25.310 kb on + strand, within CCNA_00025at 25.343 kb on + strand, within CCNA_00025at 25.351 kb on - strand, within CCNA_00025at 25.351 kb on - strand, within CCNA_00025at 25.362 kb on - strand, within CCNA_00025at 25.369 kb on - strand, within CCNA_00025at 25.382 kb on + strand, within CCNA_00025at 25.384 kb on - strand, within CCNA_00025at 25.398 kb on + strand, within CCNA_00025at 25.398 kb on + strand, within CCNA_00025at 25.406 kb on - strand, within CCNA_00025at 25.422 kb on - strand, within CCNA_00025at 25.425 kb on - strand, within CCNA_00025at 25.501 kb on - strand, within CCNA_00025at 25.505 kb on - strand, within CCNA_00025at 25.521 kb on + strand, within CCNA_00025at 25.561 kb on - strand, within CCNA_00025at 25.606 kb on - strand, within CCNA_00025at 25.631 kb on + strand, within CCNA_00025at 25.653 kb on + strand, within CCNA_00025at 25.686 kb on + strand, within CCNA_00025at 25.834 kb on + strand, within CCNA_00025at 25.842 kb on - strand, within CCNA_00025at 25.858 kb on + strand, within CCNA_00025at 25.910 kb on + strand, within CCNA_00025at 25.929 kb on + strand, within CCNA_00025at 25.937 kb on - strand, within CCNA_00025at 25.961 kb on - strand, within CCNA_00025at 25.975 kb on - strand, within CCNA_00025at 25.983 kb on + strand, within CCNA_00025at 26.002 kb on + strand, within CCNA_00025at 26.015 kb on - strand, within CCNA_00025at 26.015 kb on - strand, within CCNA_00025at 26.032 kb on + strand, within CCNA_00025at 26.040 kb on - strand, within CCNA_00025at 26.040 kb on - strand, within CCNA_00025at 26.040 kb on - strand, within CCNA_00025at 26.040 kb on - strand, within CCNA_00025at 26.144 kb on + strand, within CCNA_00025at 26.152 kb on - strand, within CCNA_00025at 26.154 kb on + strand, within CCNA_00025at 26.175 kb on + strand, within CCNA_00025at 26.178 kb on + strand, within CCNA_00025at 26.178 kb on + strand, within CCNA_00025at 26.178 kb on + strand, within CCNA_00025at 26.178 kb on - strand, within CCNA_00025at 26.266 kb on + strand, within CCNA_00025at 26.266 kb on + strand, within CCNA_00025at 26.268 kb on + strand, within CCNA_00025at 26.268 kb on + strand, within CCNA_00025at 26.274 kb on - strand, within CCNA_00025at 26.274 kb on - strand, within CCNA_00025at 26.274 kb on - strand, within CCNA_00025at 26.276 kb on - strand, within CCNA_00025at 26.286 kb on - strand, within CCNA_00025at 26.317 kb on - strand, within CCNA_00025at 26.319 kb on + strand, within CCNA_00025at 26.319 kb on + strand, within CCNA_00025at 26.352 kb on - strand, within CCNA_00025at 26.391 kb on - strand, within CCNA_00025at 26.392 kb on - strand, within CCNA_00025at 26.435 kb on - strand, within CCNA_00025at 26.500 kb on + strandat 26.500 kb on + strandat 26.508 kb on - strandat 26.527 kb on - strandat 26.530 kb on + strandat 26.593 kb on - strandat 26.623 kb on + strandat 26.631 kb on - strandat 26.660 kb on - strandat 26.668 kb on + strandat 26.668 kb on + strandat 26.678 kb on + strandat 26.678 kb on + strandat 26.678 kb on + strandat 26.686 kb on - strandat 26.686 kb on - strandat 26.693 kb on - strandat 26.698 kb on + strandat 26.698 kb on + strandat 26.698 kb on + strandat 26.716 kb on + strandat 26.729 kb on - strandat 26.732 kb on + strandat 26.735 kb on - strandat 26.740 kb on - strandat 26.797 kb on + strandat 26.805 kb on - strandat 26.896 kb on + strandat 26.909 kb on + strandat 26.918 kb on - strandat 26.944 kb on + strandat 26.945 kb on + strandat 26.955 kb on + strandat 26.963 kb on - strandat 26.986 kb on - strand, within CCNA_00026at 27.030 kb on + strand, within CCNA_00026at 27.030 kb on + strand, within CCNA_00026at 27.030 kb on + strand, within CCNA_00026at 27.095 kb on - strand, within CCNA_00026at 27.095 kb on - strand, within CCNA_00026at 27.105 kb on + strand, within CCNA_00026at 27.105 kb on - strand, within CCNA_00026at 27.114 kb on - strand, within CCNA_00026at 27.192 kb on - strand, within CCNA_00026at 27.212 kb on + strand, within CCNA_00026at 27.215 kb on - strand, within CCNA_00026at 27.238 kb on - strand, within CCNA_00026at 27.250 kb on + strand, within CCNA_00026at 27.250 kb on + strand, within CCNA_00026at 27.250 kb on + strand, within CCNA_00026at 27.258 kb on - strand, within CCNA_00026at 27.258 kb on - strand, within CCNA_00026at 27.258 kb on - strand, within CCNA_00026at 27.258 kb on - strand, within CCNA_00026at 27.258 kb on - strand, within CCNA_00026at 27.385 kb on - strand, within CCNA_00026at 27.386 kb on - strand, within CCNA_00026at 27.423 kb on + strand, within CCNA_00026at 27.444 kb on - strand, within CCNA_00026at 27.501 kb on + strand, within CCNA_00026at 27.597 kb on + strand, within CCNA_00026at 27.613 kb on + strand, within CCNA_00026at 27.613 kb on + strand, within CCNA_00026at 27.621 kb on - strand, within CCNA_00026at 27.626 kb on - strand, within CCNA_00026at 27.626 kb on - strand, within CCNA_00026at 27.626 kb on - strand, within CCNA_00026

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 28 days
remove
23,993 + CCNA_00023 0.75 +1.6
24,001 - CCNA_00023 0.78 +2.7
24,019 - CCNA_00023 0.83 -2.1
24,020 - CCNA_00023 0.83 -2.0
24,041 - -1.4
24,075 + -1.1
24,083 - -1.3
24,165 + -1.5
24,240 + CCNA_00024 0.17 -0.9
24,283 - CCNA_00024 0.22 +0.4
24,322 + CCNA_00024 0.26 +1.1
24,322 + CCNA_00024 0.26 -0.9
24,328 - CCNA_00024 0.27 -0.8
24,358 - CCNA_00024 0.30 -0.5
24,443 + CCNA_00024 0.40 -1.6
24,444 - CCNA_00024 0.40 +2.1
24,492 - CCNA_00024 0.45 +1.5
24,492 - CCNA_00024 0.45 -1.2
24,516 + CCNA_00024 0.48 -0.6
24,516 + CCNA_00024 0.48 -0.2
24,524 - CCNA_00024 0.49 +0.8
24,531 + CCNA_00024 0.49 -1.6
24,531 + CCNA_00024 0.49 -1.5
24,531 + CCNA_00024 0.49 -0.8
24,563 + CCNA_00024 0.53 -1.2
24,629 + CCNA_00024 0.60 +1.1
24,660 - CCNA_00024 0.64 -0.2
24,666 - CCNA_00024 0.65 +1.1
24,675 + CCNA_00024 0.66 -0.4
24,698 - CCNA_00024 0.68 +0.6
24,795 + CCNA_00024 0.79 +2.5
24,848 + CCNA_00024 0.85 -1.5
24,856 - CCNA_00024 0.86 -0.5
24,857 + CCNA_00024 0.86 -0.2
24,920 - +1.8
24,925 + -0.0
24,932 + +1.1
24,936 + -1.2
24,940 - -0.1
24,942 + +1.0
24,969 - +0.4
24,978 - +1.0
25,013 + -2.1
25,016 - +2.1
25,043 + -1.1
25,048 + -3.3
25,053 + -1.6
25,060 + -1.9
25,061 - -0.8
25,061 - +0.7
25,075 - -2.8
25,082 + -2.9
25,082 + -1.4
25,082 + -2.0
25,090 - -1.8
25,117 + -2.9
25,123 + -2.4
25,126 - -0.8
25,128 + +0.1
25,128 + -1.9
25,135 + -1.4
25,160 + CCNA_00025 0.10 -2.6
25,168 - CCNA_00025 0.11 -3.2
25,171 + CCNA_00025 0.11 -3.3
25,171 + CCNA_00025 0.11 +1.4
25,176 + CCNA_00025 0.11 -0.4
25,179 - CCNA_00025 0.11 -1.6
25,179 - CCNA_00025 0.11 -1.8
25,179 - CCNA_00025 0.11 -2.1
25,179 - CCNA_00025 0.11 -2.4
25,184 - CCNA_00025 0.12 -2.9
25,184 - CCNA_00025 0.12 -3.1
25,204 + CCNA_00025 0.13 +2.1
25,204 + CCNA_00025 0.13 -2.0
25,204 - CCNA_00025 0.13 +0.1
25,215 + CCNA_00025 0.14 +2.1
25,229 + CCNA_00025 0.14 -1.2
25,237 - CCNA_00025 0.15 -1.1
25,242 - CCNA_00025 0.15 -3.0
25,261 + CCNA_00025 0.16 -3.6
25,261 + CCNA_00025 0.16 +1.1
25,274 + CCNA_00025 0.17 -2.2
25,289 + CCNA_00025 0.18 -1.4
25,304 + CCNA_00025 0.19 -0.2
25,310 + CCNA_00025 0.19 -3.5
25,343 + CCNA_00025 0.21 -3.9
25,351 - CCNA_00025 0.22 -1.1
25,351 - CCNA_00025 0.22 -1.4
25,362 - CCNA_00025 0.22 -1.7
25,369 - CCNA_00025 0.23 -3.8
25,382 + CCNA_00025 0.24 -2.2
25,384 - CCNA_00025 0.24 -2.5
25,398 + CCNA_00025 0.25 -1.1
25,398 + CCNA_00025 0.25 -1.8
25,406 - CCNA_00025 0.25 -3.1
25,422 - CCNA_00025 0.26 -1.2
25,425 - CCNA_00025 0.26 -2.3
25,501 - CCNA_00025 0.31 -3.7
25,505 - CCNA_00025 0.31 -2.6
25,521 + CCNA_00025 0.32 -2.0
25,561 - CCNA_00025 0.34 -1.3
25,606 - CCNA_00025 0.37 -2.1
25,631 + CCNA_00025 0.39 -0.8
25,653 + CCNA_00025 0.40 -0.9
25,686 + CCNA_00025 0.42 -2.2
25,834 + CCNA_00025 0.51 -1.9
25,842 - CCNA_00025 0.51 +1.9
25,858 + CCNA_00025 0.52 -2.1
25,910 + CCNA_00025 0.56 -0.7
25,929 + CCNA_00025 0.57 -2.0
25,937 - CCNA_00025 0.57 -3.4
25,961 - CCNA_00025 0.59 -1.4
25,975 - CCNA_00025 0.60 -0.7
25,983 + CCNA_00025 0.60 +1.1
26,002 + CCNA_00025 0.61 -2.9
26,015 - CCNA_00025 0.62 -3.5
26,015 - CCNA_00025 0.62 +0.5
26,032 + CCNA_00025 0.63 -0.2
26,040 - CCNA_00025 0.63 -1.6
26,040 - CCNA_00025 0.63 -3.6
26,040 - CCNA_00025 0.63 -1.2
26,040 - CCNA_00025 0.63 -2.4
26,144 + CCNA_00025 0.70 -0.9
26,152 - CCNA_00025 0.70 -0.3
26,154 + CCNA_00025 0.70 -0.2
26,175 + CCNA_00025 0.72 -2.6
26,178 + CCNA_00025 0.72 -3.9
26,178 + CCNA_00025 0.72 -2.8
26,178 + CCNA_00025 0.72 -1.7
26,178 - CCNA_00025 0.72 -1.5
26,266 + CCNA_00025 0.77 -1.4
26,266 + CCNA_00025 0.77 -2.0
26,268 + CCNA_00025 0.77 -4.0
26,268 + CCNA_00025 0.77 -2.8
26,274 - CCNA_00025 0.78 -0.7
26,274 - CCNA_00025 0.78 -3.2
26,274 - CCNA_00025 0.78 -2.6
26,276 - CCNA_00025 0.78 -1.5
26,286 - CCNA_00025 0.78 -2.3
26,317 - CCNA_00025 0.80 -1.5
26,319 + CCNA_00025 0.80 -0.2
26,319 + CCNA_00025 0.80 -0.2
26,352 - CCNA_00025 0.82 -2.5
26,391 - CCNA_00025 0.85 +1.4
26,392 - CCNA_00025 0.85 -3.6
26,435 - CCNA_00025 0.87 -1.7
26,500 + -2.9
26,500 + -1.7
26,508 - -2.5
26,527 - -1.6
26,530 + -2.0
26,593 - +0.5
26,623 + -1.5
26,631 - -1.9
26,660 - -1.6
26,668 + -1.0
26,668 + -2.1
26,678 + -0.9
26,678 + -2.9
26,678 + -2.3
26,686 - +0.8
26,686 - +1.1
26,693 - -2.4
26,698 + +2.1
26,698 + -3.1
26,698 + -2.1
26,716 + -0.5
26,729 - -2.4
26,732 + -2.4
26,735 - -0.8
26,740 - +0.4
26,797 + +0.1
26,805 - -0.6
26,896 + -1.3
26,909 + -3.8
26,918 - -2.4
26,944 + -3.1
26,945 + -1.2
26,955 + -1.1
26,963 - -0.4
26,986 - CCNA_00026 0.11 -0.8
27,030 + CCNA_00026 0.12 -0.9
27,030 + CCNA_00026 0.12 -0.9
27,030 + CCNA_00026 0.12 -0.7
27,095 - CCNA_00026 0.15 +1.1
27,095 - CCNA_00026 0.15 -3.1
27,105 + CCNA_00026 0.15 -1.1
27,105 - CCNA_00026 0.15 +1.1
27,114 - CCNA_00026 0.15 +1.1
27,192 - CCNA_00026 0.18 +0.3
27,212 + CCNA_00026 0.19 +2.1
27,215 - CCNA_00026 0.19 -0.2
27,238 - CCNA_00026 0.20 -0.1
27,250 + CCNA_00026 0.20 +1.1
27,250 + CCNA_00026 0.20 -2.3
27,250 + CCNA_00026 0.20 +1.4
27,258 - CCNA_00026 0.21 -1.0
27,258 - CCNA_00026 0.21 -0.8
27,258 - CCNA_00026 0.21 +0.1
27,258 - CCNA_00026 0.21 +0.5
27,258 - CCNA_00026 0.21 -1.1
27,385 - CCNA_00026 0.25 -1.2
27,386 - CCNA_00026 0.25 -1.4
27,423 + CCNA_00026 0.27 -0.4
27,444 - CCNA_00026 0.27 -0.5
27,501 + CCNA_00026 0.30 +0.3
27,597 + CCNA_00026 0.33 -2.2
27,613 + CCNA_00026 0.34 -2.3
27,613 + CCNA_00026 0.34 -0.8
27,621 - CCNA_00026 0.34 -0.1
27,626 - CCNA_00026 0.34 -2.3
27,626 - CCNA_00026 0.34 -0.2
27,626 - CCNA_00026 0.34 -0.4

Or see this region's nucleotide sequence