Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1996

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsbV and DVU1996 are separated by 598 nucleotidesDVU1996 and DORF14879 are separated by 1 nucleotides DVU1995: rsbV - anti-anti-sigma factor (TIGR), at 2,076,256 to 2,076,585 rsbV DVU1996: DVU1996 - quaternary ammonium compound-resistance protein QacC, putative (TIGR), at 2,077,184 to 2,077,513 DVU1996 DORF14879: DORF14879 - no description, at 2,077,515 to 2,079,059 DORF14879 Position (kb) 2077 2078Strain fitness (log2 ratio) -1 0 1at 2076.199 kb on - strandat 2076.261 kb on - strandat 2076.292 kb on - strand, within rsbVat 2076.330 kb on - strand, within rsbVat 2076.414 kb on - strand, within rsbVat 2076.424 kb on + strand, within rsbVat 2076.424 kb on + strand, within rsbVat 2076.444 kb on - strand, within rsbVat 2076.444 kb on - strand, within rsbVat 2076.464 kb on - strand, within rsbVat 2076.513 kb on - strand, within rsbVat 2076.585 kb on + strandat 2076.603 kb on - strandat 2076.619 kb on + strandat 2076.629 kb on - strandat 2076.645 kb on - strandat 2076.670 kb on - strandat 2076.813 kb on + strandat 2076.857 kb on - strandat 2076.857 kb on - strandat 2076.902 kb on - strandat 2076.902 kb on - strandat 2076.960 kb on + strandat 2077.062 kb on - strandat 2077.083 kb on - strandat 2077.244 kb on + strand, within DVU1996at 2077.379 kb on + strand, within DVU1996at 2077.470 kb on + strand, within DVU1996at 2077.479 kb on - strand, within DVU1996at 2077.874 kb on + strand, within DORF14879at 2078.046 kb on - strand, within DORF14879at 2078.293 kb on + strand, within DORF14879

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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2,076,199 - +0.1
2,076,261 - +0.2
2,076,292 - rsbV DVU1995 0.11 +0.1
2,076,330 - rsbV DVU1995 0.22 -1.4
2,076,414 - rsbV DVU1995 0.48 -0.8
2,076,424 + rsbV DVU1995 0.51 -0.5
2,076,424 + rsbV DVU1995 0.51 -1.2
2,076,444 - rsbV DVU1995 0.57 +0.9
2,076,444 - rsbV DVU1995 0.57 +0.1
2,076,464 - rsbV DVU1995 0.63 -0.2
2,076,513 - rsbV DVU1995 0.78 -0.5
2,076,585 + -0.4
2,076,603 - +0.1
2,076,619 + -0.5
2,076,629 - +0.5
2,076,645 - +0.3
2,076,670 - +0.1
2,076,813 + -0.2
2,076,857 - -0.3
2,076,857 - +0.4
2,076,902 - -0.1
2,076,902 - -0.7
2,076,960 + -0.4
2,077,062 - -0.2
2,077,083 - +0.4
2,077,244 + DVU1996 0.18 +1.0
2,077,379 + DVU1996 0.59 +0.3
2,077,470 + DVU1996 0.87 -0.2
2,077,479 - DVU1996 0.89 +1.4
2,077,874 + DORF14879 0.23 +0.0
2,078,046 - DORF14879 0.34 +0.5
2,078,293 + DORF14879 0.50 -0.2

Or see this region's nucleotide sequence