Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF37046

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1729 and DVU1730 are separated by 9 nucleotidesDVU1730 and DVU1731 are separated by 107 nucleotidesDVU1731 and DORF37046 are separated by 323 nucleotidesDORF37046 and DVU1735 are separated by 20 nucleotidesDVU1735 and DVU1736 overlap by 17 nucleotidesDVU1736 and DVU1737 are separated by 106 nucleotidesDVU1737 and DORF13021 are separated by 2 nucleotidesDORF13021 and DVU1738 overlap by 23 nucleotides DVU1729: DVU1729 - killer protein, putative (TIGR), at 1,800,946 to 1,801,224 DVU1729 DVU1730: DVU1730 - DNA-binding protein (TIGR), at 1,801,234 to 1,801,539 DVU1730 DVU1731: DVU1731 - hypothetical protein (TIGR), at 1,801,647 to 1,801,817 DVU1731 DORF37046: DORF37046 - no description, at 1,802,141 to 1,805,941 DORF37046 DVU1735: DVU1735 - hypothetical protein (TIGR), at 1,805,962 to 1,806,105 DVU1735 DVU1736: DVU1736 - hypothetical protein (TIGR), at 1,806,089 to 1,806,283 DVU1736 DVU1737: DVU1737 - conserved hypothetical protein (TIGR), at 1,806,390 to 1,806,608 DVU1737 DORF13021: DORF13021 - no description, at 1,806,611 to 1,806,808 DORF13021 DVU1738: DVU1738 - site-specific recombinase, phage integrase family (TIGR), at 1,806,786 to 1,807,430 DVU1738 Position (kb) 1802 1803 1804 1805 1806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1801.545 kb on + strandat 1801.547 kb on + strandat 1801.547 kb on + strandat 1801.566 kb on + strandat 1801.591 kb on - strandat 1801.827 kb on - strandat 1801.852 kb on + strandat 1801.852 kb on + strandat 1801.860 kb on - strandat 1801.879 kb on + strandat 1801.901 kb on + strandat 1801.911 kb on - strandat 1801.970 kb on - strandat 1802.069 kb on + strandat 1802.143 kb on + strandat 1802.242 kb on + strandat 1802.270 kb on + strandat 1802.278 kb on - strandat 1802.383 kb on - strandat 1802.418 kb on - strandat 1802.424 kb on - strandat 1802.474 kb on - strandat 1802.625 kb on + strand, within DORF37046at 1802.809 kb on - strand, within DORF37046at 1802.888 kb on + strand, within DORF37046at 1802.891 kb on - strand, within DORF37046at 1803.067 kb on - strand, within DORF37046at 1803.287 kb on + strand, within DORF37046at 1803.310 kb on - strand, within DORF37046at 1803.323 kb on + strand, within DORF37046at 1803.346 kb on + strand, within DORF37046at 1803.401 kb on + strand, within DORF37046at 1803.413 kb on + strand, within DORF37046at 1803.418 kb on + strand, within DORF37046at 1803.426 kb on - strand, within DORF37046at 1803.620 kb on - strand, within DORF37046at 1803.777 kb on + strand, within DORF37046at 1803.850 kb on - strand, within DORF37046at 1803.980 kb on - strand, within DORF37046at 1804.096 kb on - strand, within DORF37046at 1804.376 kb on + strand, within DORF37046at 1804.448 kb on + strand, within DORF37046at 1804.448 kb on + strand, within DORF37046at 1804.571 kb on + strand, within DORF37046at 1804.604 kb on + strand, within DORF37046at 1804.678 kb on - strand, within DORF37046at 1804.886 kb on - strand, within DORF37046at 1804.989 kb on + strand, within DORF37046at 1805.153 kb on - strand, within DORF37046at 1805.256 kb on + strand, within DORF37046at 1805.355 kb on + strand, within DORF37046at 1805.558 kb on + strand, within DORF37046at 1805.699 kb on - strandat 1805.709 kb on - strandat 1805.711 kb on + strandat 1805.764 kb on + strandat 1805.800 kb on + strandat 1805.808 kb on - strandat 1805.818 kb on - strandat 1805.850 kb on + strandat 1805.902 kb on - strandat 1805.942 kb on + strandat 1805.942 kb on + strandat 1805.977 kb on - strand, within DVU1735at 1805.989 kb on - strand, within DVU1735at 1805.999 kb on - strand, within DVU1735at 1806.087 kb on - strand, within DVU1735at 1806.137 kb on - strand, within DVU1736at 1806.264 kb on + strandat 1806.277 kb on + strandat 1806.277 kb on + strandat 1806.339 kb on - strandat 1806.357 kb on + strandat 1806.358 kb on - strandat 1806.361 kb on + strandat 1806.362 kb on + strandat 1806.362 kb on + strandat 1806.374 kb on + strandat 1806.374 kb on + strandat 1806.374 kb on + strandat 1806.382 kb on - strandat 1806.503 kb on - strand, within DVU1737at 1806.558 kb on - strand, within DVU1737at 1806.583 kb on - strand, within DVU1737at 1806.587 kb on - strandat 1806.659 kb on + strand, within DORF13021at 1806.784 kb on + strand, within DORF13021at 1806.790 kb on - strandat 1806.912 kb on - strand, within DVU1738at 1806.924 kb on + strand, within DVU1738at 1806.927 kb on + strand, within DVU1738

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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1,801,545 + -0.6
1,801,547 + -0.7
1,801,547 + -0.2
1,801,566 + +0.2
1,801,591 - -0.3
1,801,827 - -0.4
1,801,852 + +0.4
1,801,852 + -1.4
1,801,860 - -0.2
1,801,879 + +0.0
1,801,901 + -0.1
1,801,911 - -0.0
1,801,970 - -0.3
1,802,069 + -1.8
1,802,143 + +0.3
1,802,242 + -0.6
1,802,270 + +0.3
1,802,278 - -2.6
1,802,383 - -0.2
1,802,418 - -0.2
1,802,424 - +0.1
1,802,474 - -0.1
1,802,625 + DORF37046 0.13 -0.6
1,802,809 - DORF37046 0.18 -0.0
1,802,888 + DORF37046 0.20 -0.9
1,802,891 - DORF37046 0.20 -0.0
1,803,067 - DORF37046 0.24 +0.3
1,803,287 + DORF37046 0.30 -1.6
1,803,310 - DORF37046 0.31 -1.1
1,803,323 + DORF37046 0.31 -0.6
1,803,346 + DORF37046 0.32 +1.9
1,803,401 + DORF37046 0.33 -1.7
1,803,413 + DORF37046 0.33 -3.6
1,803,418 + DORF37046 0.34 +0.1
1,803,426 - DORF37046 0.34 -0.4
1,803,620 - DORF37046 0.39 -0.7
1,803,777 + DORF37046 0.43 +0.6
1,803,850 - DORF37046 0.45 +0.2
1,803,980 - DORF37046 0.48 -1.1
1,804,096 - DORF37046 0.51 -0.4
1,804,376 + DORF37046 0.59 -0.1
1,804,448 + DORF37046 0.61 -0.3
1,804,448 + DORF37046 0.61 -0.3
1,804,571 + DORF37046 0.64 -0.2
1,804,604 + DORF37046 0.65 -0.9
1,804,678 - DORF37046 0.67 +0.0
1,804,886 - DORF37046 0.72 -0.4
1,804,989 + DORF37046 0.75 -1.9
1,805,153 - DORF37046 0.79 -0.3
1,805,256 + DORF37046 0.82 -2.1
1,805,355 + DORF37046 0.85 -0.7
1,805,558 + DORF37046 0.90 -0.2
1,805,699 - -0.3
1,805,709 - -0.2
1,805,711 + +0.1
1,805,764 + -1.4
1,805,800 + +0.3
1,805,808 - -2.3
1,805,818 - -1.3
1,805,850 + -0.0
1,805,902 - +0.2
1,805,942 + -0.1
1,805,942 + -0.4
1,805,977 - DVU1735 0.10 -0.4
1,805,989 - DVU1735 0.19 +0.1
1,805,999 - DVU1735 0.26 -0.1
1,806,087 - DVU1735 0.87 -0.2
1,806,137 - DVU1736 0.25 -0.1
1,806,264 + +0.0
1,806,277 + +0.7
1,806,277 + -0.3
1,806,339 - +0.2
1,806,357 + +0.9
1,806,358 - -0.3
1,806,361 + -0.5
1,806,362 + -0.2
1,806,362 + -2.1
1,806,374 + +0.2
1,806,374 + -0.2
1,806,374 + +0.3
1,806,382 - +0.0
1,806,503 - DVU1737 0.52 +0.0
1,806,558 - DVU1737 0.77 -0.5
1,806,583 - DVU1737 0.88 -0.3
1,806,587 - +0.2
1,806,659 + DORF13021 0.24 +0.8
1,806,784 + DORF13021 0.87 +0.0
1,806,790 - +0.7
1,806,912 - DVU1738 0.20 +0.1
1,806,924 + DVU1738 0.21 -1.3
1,806,927 + DVU1738 0.22 -0.0

Or see this region's nucleotide sequence