Experiment: BG11 with Nalidixic 0.001953125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt merR and Synpcc7942_0840 are separated by 36 nucleotides Synpcc7942_0840 and Synpcc7942_0841 are separated by 197 nucleotides
Synpcc7942_0839: merR - Nitrilase, at 833,950 to 834,954
merR
Synpcc7942_0840: Synpcc7942_0840 - hypothetical protein, at 834,991 to 835,473
_0840
Synpcc7942_0841: Synpcc7942_0841 - putative flavoprotein involved in K+ transport, at 835,671 to 837,011
_0841
Position (kb) 834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 833.993 kb on - strand at 833.998 kb on - strand at 834.029 kb on - strand at 834.054 kb on - strand, within merR at 834.066 kb on + strand, within merR at 834.071 kb on + strand, within merR at 834.074 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.107 kb on - strand, within merR at 834.132 kb on - strand, within merR at 834.189 kb on - strand, within merR at 834.202 kb on - strand, within merR at 834.204 kb on + strand, within merR at 834.204 kb on + strand, within merR at 834.212 kb on - strand, within merR at 834.212 kb on - strand, within merR at 834.217 kb on - strand, within merR at 834.222 kb on - strand, within merR at 834.226 kb on + strand, within merR at 834.246 kb on - strand, within merR at 834.253 kb on - strand, within merR at 834.291 kb on + strand, within merR at 834.315 kb on + strand, within merR at 834.318 kb on - strand, within merR at 834.351 kb on + strand, within merR at 834.375 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.455 kb on + strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.476 kb on + strand, within merR at 834.481 kb on + strand, within merR at 834.482 kb on + strand, within merR at 834.488 kb on + strand, within merR at 834.489 kb on - strand, within merR at 834.490 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.513 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand at 834.527 kb on + strand, within merR at 834.537 kb on - strand, within merR at 834.546 kb on - strand, within merR at 834.547 kb on - strand, within merR at 834.616 kb on - strand, within merR at 834.651 kb on + strand, within merR at 834.651 kb on - strand, within merR at 834.659 kb on - strand, within merR at 834.711 kb on + strand, within merR at 834.746 kb on + strand, within merR at 834.754 kb on - strand, within merR at 834.800 kb on + strand, within merR at 834.904 kb on + strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.927 kb on - strand at 834.962 kb on + strand at 835.139 kb on + strand, within Synpcc7942_0840 at 835.233 kb on - strand at 835.259 kb on + strand, within Synpcc7942_0840 at 835.259 kb on + strand, within Synpcc7942_0840 at 835.262 kb on - strand, within Synpcc7942_0840 at 835.341 kb on + strand, within Synpcc7942_0840 at 835.472 kb on - strand at 835.673 kb on + strand at 835.705 kb on + strand at 835.705 kb on + strand at 835.706 kb on + strand at 835.713 kb on - strand at 835.713 kb on - strand at 835.714 kb on - strand at 835.714 kb on - strand at 835.732 kb on + strand at 835.740 kb on - strand at 835.770 kb on + strand at 835.778 kb on - strand at 835.792 kb on - strand at 835.813 kb on + strand, within Synpcc7942_0841 at 835.823 kb on - strand, within Synpcc7942_0841 at 835.827 kb on + strand, within Synpcc7942_0841 at 835.828 kb on - strand, within Synpcc7942_0841 at 835.835 kb on - strand, within Synpcc7942_0841 at 835.860 kb on + strand, within Synpcc7942_0841 at 835.933 kb on - strand, within Synpcc7942_0841 at 835.983 kb on + strand, within Synpcc7942_0841 at 836.003 kb on - strand, within Synpcc7942_0841 at 836.028 kb on - strand, within Synpcc7942_0841 at 836.062 kb on + strand, within Synpcc7942_0841 at 836.062 kb on + strand, within Synpcc7942_0841 at 836.085 kb on + strand, within Synpcc7942_0841 at 836.090 kb on + strand, within Synpcc7942_0841 at 836.093 kb on - strand, within Synpcc7942_0841 at 836.098 kb on - strand, within Synpcc7942_0841 at 836.098 kb on - strand, within Synpcc7942_0841 at 836.100 kb on + strand, within Synpcc7942_0841 at 836.115 kb on - strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.123 kb on + strand, within Synpcc7942_0841 at 836.148 kb on - strand, within Synpcc7942_0841 at 836.160 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.206 kb on + strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.214 kb on - strand, within Synpcc7942_0841 at 836.224 kb on - strand, within Synpcc7942_0841 at 836.232 kb on + strand, within Synpcc7942_0841 at 836.277 kb on + strand at 836.282 kb on + strand, within Synpcc7942_0841 at 836.301 kb on - strand, within Synpcc7942_0841 at 836.309 kb on - strand, within Synpcc7942_0841 at 836.330 kb on - strand, within Synpcc7942_0841 at 836.342 kb on - strand, within Synpcc7942_0841 at 836.348 kb on + strand, within Synpcc7942_0841 at 836.392 kb on - strand, within Synpcc7942_0841 at 836.407 kb on + strand, within Synpcc7942_0841 at 836.415 kb on + strand, within Synpcc7942_0841 at 836.449 kb on + strand, within Synpcc7942_0841
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Nalidixic 0.001953125 mg/ml remove 833,993 - +0.4 833,998 - +0.6 834,029 - -0.4 834,054 - merR Synpcc7942_0839 0.10 +0.2 834,066 + merR Synpcc7942_0839 0.12 +1.2 834,071 + merR Synpcc7942_0839 0.12 -1.6 834,074 - merR Synpcc7942_0839 0.12 -0.4 834,084 - merR Synpcc7942_0839 0.13 +0.0 834,084 - merR Synpcc7942_0839 0.13 -0.9 834,107 - merR Synpcc7942_0839 0.16 +1.5 834,132 - merR Synpcc7942_0839 0.18 +0.3 834,189 - merR Synpcc7942_0839 0.24 -0.9 834,202 - merR Synpcc7942_0839 0.25 +0.3 834,204 + merR Synpcc7942_0839 0.25 +1.0 834,204 + merR Synpcc7942_0839 0.25 +0.3 834,212 - merR Synpcc7942_0839 0.26 +0.4 834,212 - merR Synpcc7942_0839 0.26 +0.3 834,217 - merR Synpcc7942_0839 0.27 -1.0 834,222 - merR Synpcc7942_0839 0.27 +0.8 834,226 + merR Synpcc7942_0839 0.27 +0.2 834,246 - merR Synpcc7942_0839 0.29 -0.0 834,253 - merR Synpcc7942_0839 0.30 -0.0 834,291 + merR Synpcc7942_0839 0.34 +1.3 834,315 + merR Synpcc7942_0839 0.36 -0.1 834,318 - merR Synpcc7942_0839 0.37 -0.5 834,351 + merR Synpcc7942_0839 0.40 +0.1 834,375 + merR Synpcc7942_0839 0.42 +0.1 834,448 + merR Synpcc7942_0839 0.50 +3.2 834,448 + merR Synpcc7942_0839 0.50 +1.0 834,448 + merR Synpcc7942_0839 0.50 +0.5 834,448 + merR Synpcc7942_0839 0.50 -0.1 834,455 + merR Synpcc7942_0839 0.50 -0.4 834,456 - merR Synpcc7942_0839 0.50 -0.0 834,456 - merR Synpcc7942_0839 0.50 -0.3 834,456 - merR Synpcc7942_0839 0.50 +1.4 834,463 - merR Synpcc7942_0839 0.51 +0.2 834,463 - merR Synpcc7942_0839 0.51 -1.4 834,476 + merR Synpcc7942_0839 0.52 -0.7 834,481 + merR Synpcc7942_0839 0.53 -0.4 834,482 + merR Synpcc7942_0839 0.53 +0.2 834,488 + merR Synpcc7942_0839 0.54 -0.4 834,489 - merR Synpcc7942_0839 0.54 +0.4 834,490 - merR Synpcc7942_0839 0.54 +1.6 834,496 - merR Synpcc7942_0839 0.54 -0.5 834,496 - merR Synpcc7942_0839 0.54 -0.2 834,496 - merR Synpcc7942_0839 0.54 -0.1 834,496 - merR Synpcc7942_0839 0.54 -0.1 834,496 - merR Synpcc7942_0839 0.54 +0.3 834,496 - merR Synpcc7942_0839 0.54 -0.1 834,513 + merR Synpcc7942_0839 0.56 -0.5 834,514 + merR Synpcc7942_0839 0.56 +0.5 834,514 + merR Synpcc7942_0839 0.56 +0.3 834,514 + merR Synpcc7942_0839 0.56 -2.1 834,514 + merR Synpcc7942_0839 0.56 -0.7 834,522 - merR Synpcc7942_0839 0.57 +0.3 834,522 - merR Synpcc7942_0839 0.57 -0.2 834,522 - merR Synpcc7942_0839 0.57 +0.6 834,522 - merR Synpcc7942_0839 0.57 -1.5 834,522 - +0.2 834,527 + merR Synpcc7942_0839 0.57 +0.7 834,537 - merR Synpcc7942_0839 0.58 -1.0 834,546 - merR Synpcc7942_0839 0.59 -0.6 834,547 - merR Synpcc7942_0839 0.59 +0.1 834,616 - merR Synpcc7942_0839 0.66 +1.3 834,651 + merR Synpcc7942_0839 0.70 +0.2 834,651 - merR Synpcc7942_0839 0.70 +0.1 834,659 - merR Synpcc7942_0839 0.71 -0.2 834,711 + merR Synpcc7942_0839 0.76 -1.5 834,746 + merR Synpcc7942_0839 0.79 +0.2 834,754 - merR Synpcc7942_0839 0.80 -1.2 834,800 + merR Synpcc7942_0839 0.85 -0.2 834,904 + -0.3 834,912 - -0.6 834,912 - +1.2 834,927 - +0.1 834,962 + +1.3 835,139 + Synpcc7942_0840 0.31 -0.4 835,233 - +0.6 835,259 + Synpcc7942_0840 0.55 -1.7 835,259 + Synpcc7942_0840 0.55 -1.6 835,262 - Synpcc7942_0840 0.56 -0.5 835,341 + Synpcc7942_0840 0.72 -0.7 835,472 - -1.9 835,673 + -3.1 835,705 + -0.0 835,705 + +0.0 835,706 + -0.6 835,713 - -0.1 835,713 - -0.3 835,714 - +0.0 835,714 - +0.0 835,732 + +0.1 835,740 - +0.0 835,770 + -1.1 835,778 - -0.4 835,792 - +0.2 835,813 + Synpcc7942_0841 0.11 -0.9 835,823 - Synpcc7942_0841 0.11 -0.1 835,827 + Synpcc7942_0841 0.12 +0.2 835,828 - Synpcc7942_0841 0.12 +1.7 835,835 - Synpcc7942_0841 0.12 -0.7 835,860 + Synpcc7942_0841 0.14 +0.4 835,933 - Synpcc7942_0841 0.20 +0.5 835,983 + Synpcc7942_0841 0.23 +0.3 836,003 - Synpcc7942_0841 0.25 +0.7 836,028 - Synpcc7942_0841 0.27 -1.2 836,062 + Synpcc7942_0841 0.29 +0.2 836,062 + Synpcc7942_0841 0.29 -0.6 836,085 + Synpcc7942_0841 0.31 -1.0 836,090 + Synpcc7942_0841 0.31 -0.6 836,093 - Synpcc7942_0841 0.31 -0.7 836,098 - Synpcc7942_0841 0.32 +0.2 836,098 - Synpcc7942_0841 0.32 +0.7 836,100 + Synpcc7942_0841 0.32 -1.3 836,115 - Synpcc7942_0841 0.33 -2.7 836,123 + Synpcc7942_0841 0.34 -0.8 836,123 + Synpcc7942_0841 0.34 +0.8 836,123 + Synpcc7942_0841 0.34 -0.1 836,148 - Synpcc7942_0841 0.36 -1.0 836,160 + Synpcc7942_0841 0.36 -1.0 836,206 + Synpcc7942_0841 0.40 +0.8 836,206 + Synpcc7942_0841 0.40 +0.4 836,206 + Synpcc7942_0841 0.40 -0.5 836,206 + Synpcc7942_0841 0.40 +0.4 836,214 - Synpcc7942_0841 0.40 +0.3 836,214 - Synpcc7942_0841 0.40 -0.1 836,214 - Synpcc7942_0841 0.40 +0.8 836,214 - Synpcc7942_0841 0.40 +1.0 836,214 - Synpcc7942_0841 0.40 +0.3 836,214 - Synpcc7942_0841 0.40 -0.4 836,224 - Synpcc7942_0841 0.41 -0.8 836,232 + Synpcc7942_0841 0.42 -0.3 836,277 + +1.4 836,282 + Synpcc7942_0841 0.46 -0.3 836,301 - Synpcc7942_0841 0.47 +0.7 836,309 - Synpcc7942_0841 0.48 +0.3 836,330 - Synpcc7942_0841 0.49 +0.1 836,342 - Synpcc7942_0841 0.50 -1.1 836,348 + Synpcc7942_0841 0.50 -1.6 836,392 - Synpcc7942_0841 0.54 -0.6 836,407 + Synpcc7942_0841 0.55 +0.1 836,415 + Synpcc7942_0841 0.55 +0.3 836,449 + Synpcc7942_0841 0.58 -1.1
Or see this region's nucleotide sequence