Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_818

Experiment: Calcium chloride 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_816 and Pf6N2E2_817 overlap by 4 nucleotidesPf6N2E2_817 and Pf6N2E2_818 are separated by 5 nucleotidesPf6N2E2_818 and Pf6N2E2_819 overlap by 8 nucleotidesPf6N2E2_819 and Pf6N2E2_820 are separated by 267 nucleotides Pf6N2E2_816 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 950,370 to 951,185 _816 Pf6N2E2_817 - Protein-glutamate methylesterase (EC 3.1.1.61), at 951,182 to 951,769 _817 Pf6N2E2_818 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 951,775 to 953,055 _818 Pf6N2E2_819 - Response regulator, at 953,048 to 953,425 _819 Pf6N2E2_820 - Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-), at 953,693 to 955,363 _820 Position (kb) 951 952 953 954Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 950.835 kb on - strand, within Pf6N2E2_816at 950.835 kb on - strand, within Pf6N2E2_816at 950.835 kb on - strand, within Pf6N2E2_816at 950.835 kb on - strand, within Pf6N2E2_816at 950.839 kb on - strand, within Pf6N2E2_816at 950.839 kb on - strand, within Pf6N2E2_816at 950.839 kb on - strand, within Pf6N2E2_816at 950.839 kb on - strand, within Pf6N2E2_816at 950.839 kb on - strand, within Pf6N2E2_816at 950.839 kb on - strand, within Pf6N2E2_816at 950.887 kb on - strand, within Pf6N2E2_816at 950.887 kb on - strand, within Pf6N2E2_816at 950.887 kb on - strand, within Pf6N2E2_816at 950.890 kb on - strand, within Pf6N2E2_816at 950.890 kb on - strand, within Pf6N2E2_816at 950.890 kb on - strand, within Pf6N2E2_816at 950.890 kb on - strand, within Pf6N2E2_816at 950.890 kb on - strand, within Pf6N2E2_816at 950.890 kb on - strand, within Pf6N2E2_816at 950.890 kb on - strand, within Pf6N2E2_816at 950.890 kb on - strand, within Pf6N2E2_816at 951.019 kb on + strandat 951.022 kb on - strand, within Pf6N2E2_816at 951.022 kb on - strand, within Pf6N2E2_816at 951.022 kb on - strand, within Pf6N2E2_816at 951.022 kb on - strand, within Pf6N2E2_816at 951.315 kb on + strand, within Pf6N2E2_817at 951.316 kb on - strand, within Pf6N2E2_817at 951.426 kb on + strand, within Pf6N2E2_817at 951.426 kb on + strand, within Pf6N2E2_817at 951.426 kb on + strand, within Pf6N2E2_817at 951.426 kb on + strand, within Pf6N2E2_817at 951.426 kb on + strand, within Pf6N2E2_817at 951.427 kb on - strand, within Pf6N2E2_817at 951.427 kb on - strand, within Pf6N2E2_817at 951.427 kb on - strand, within Pf6N2E2_817at 951.427 kb on - strand, within Pf6N2E2_817at 951.427 kb on - strand, within Pf6N2E2_817at 951.427 kb on - strand, within Pf6N2E2_817at 951.427 kb on - strand, within Pf6N2E2_817at 951.428 kb on + strand, within Pf6N2E2_817at 951.428 kb on + strand, within Pf6N2E2_817at 951.428 kb on + strand, within Pf6N2E2_817at 951.428 kb on + strand, within Pf6N2E2_817at 951.428 kb on + strand, within Pf6N2E2_817at 951.429 kb on - strand, within Pf6N2E2_817at 951.429 kb on - strand, within Pf6N2E2_817at 951.429 kb on - strand, within Pf6N2E2_817at 951.429 kb on - strand, within Pf6N2E2_817at 951.429 kb on - strand, within Pf6N2E2_817at 951.429 kb on - strand, within Pf6N2E2_817at 951.429 kb on - strand, within Pf6N2E2_817at 951.721 kb on + strandat 951.727 kb on + strandat 951.727 kb on + strandat 951.727 kb on + strandat 951.728 kb on - strandat 951.786 kb on + strandat 951.786 kb on + strandat 951.787 kb on - strandat 951.787 kb on - strandat 951.787 kb on - strandat 952.021 kb on - strand, within Pf6N2E2_818at 952.057 kb on + strand, within Pf6N2E2_818at 952.057 kb on + strand, within Pf6N2E2_818at 952.057 kb on + strand, within Pf6N2E2_818at 952.057 kb on + strand, within Pf6N2E2_818at 952.058 kb on - strand, within Pf6N2E2_818at 952.058 kb on - strand, within Pf6N2E2_818at 952.058 kb on - strand, within Pf6N2E2_818at 952.156 kb on + strand, within Pf6N2E2_818at 952.157 kb on - strand, within Pf6N2E2_818at 952.157 kb on - strand, within Pf6N2E2_818at 952.157 kb on - strand, within Pf6N2E2_818at 952.191 kb on - strand, within Pf6N2E2_818at 952.720 kb on + strand, within Pf6N2E2_818at 952.743 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 953.015 kb on + strandat 953.016 kb on - strandat 953.025 kb on + strandat 953.025 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.074 kb on - strandat 953.120 kb on + strand, within Pf6N2E2_819at 953.148 kb on + strand, within Pf6N2E2_819at 953.148 kb on + strand, within Pf6N2E2_819at 953.149 kb on - strand, within Pf6N2E2_819at 953.312 kb on + strand, within Pf6N2E2_819at 953.423 kb on + strandat 953.485 kb on - strandat 953.519 kb on + strandat 953.520 kb on - strandat 953.633 kb on - strandat 953.633 kb on - strandat 953.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Calcium chloride 0.0125 M
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950,835 - Pf6N2E2_816 0.57 +0.2
950,835 - Pf6N2E2_816 0.57 -0.4
950,835 - Pf6N2E2_816 0.57 -0.5
950,835 - Pf6N2E2_816 0.57 +0.4
950,839 - Pf6N2E2_816 0.57 -2.8
950,839 - Pf6N2E2_816 0.57 -1.5
950,839 - Pf6N2E2_816 0.57 +0.1
950,839 - Pf6N2E2_816 0.57 +0.0
950,839 - Pf6N2E2_816 0.57 -1.2
950,839 - Pf6N2E2_816 0.57 +0.4
950,887 - Pf6N2E2_816 0.63 +0.1
950,887 - Pf6N2E2_816 0.63 -1.6
950,887 - Pf6N2E2_816 0.63 +0.7
950,890 - Pf6N2E2_816 0.64 -1.4
950,890 - Pf6N2E2_816 0.64 -3.1
950,890 - Pf6N2E2_816 0.64 +0.9
950,890 - Pf6N2E2_816 0.64 -0.2
950,890 - Pf6N2E2_816 0.64 -0.0
950,890 - Pf6N2E2_816 0.64 -0.2
950,890 - Pf6N2E2_816 0.64 +0.8
950,890 - Pf6N2E2_816 0.64 +0.9
951,019 + +0.5
951,022 - Pf6N2E2_816 0.80 -0.0
951,022 - Pf6N2E2_816 0.80 -2.2
951,022 - Pf6N2E2_816 0.80 -2.7
951,022 - Pf6N2E2_816 0.80 -0.4
951,315 + Pf6N2E2_817 0.23 +0.5
951,316 - Pf6N2E2_817 0.23 -0.7
951,426 + Pf6N2E2_817 0.41 +1.7
951,426 + Pf6N2E2_817 0.41 +1.5
951,426 + Pf6N2E2_817 0.41 +2.1
951,426 + Pf6N2E2_817 0.41 -0.2
951,426 + Pf6N2E2_817 0.41 +1.1
951,427 - Pf6N2E2_817 0.42 -1.3
951,427 - Pf6N2E2_817 0.42 -0.3
951,427 - Pf6N2E2_817 0.42 -1.0
951,427 - Pf6N2E2_817 0.42 -1.6
951,427 - Pf6N2E2_817 0.42 -0.4
951,427 - Pf6N2E2_817 0.42 -0.8
951,427 - Pf6N2E2_817 0.42 -2.1
951,428 + Pf6N2E2_817 0.42 +1.2
951,428 + Pf6N2E2_817 0.42 +2.1
951,428 + Pf6N2E2_817 0.42 +1.5
951,428 + Pf6N2E2_817 0.42 +0.6
951,428 + Pf6N2E2_817 0.42 +0.8
951,429 - Pf6N2E2_817 0.42 -0.1
951,429 - Pf6N2E2_817 0.42 -2.1
951,429 - Pf6N2E2_817 0.42 -0.5
951,429 - Pf6N2E2_817 0.42 +0.7
951,429 - Pf6N2E2_817 0.42 -1.6
951,429 - Pf6N2E2_817 0.42 -0.7
951,429 - Pf6N2E2_817 0.42 -0.1
951,721 + +3.5
951,727 + +0.5
951,727 + +0.7
951,727 + -0.2
951,728 - +0.9
951,786 + -0.9
951,786 + +0.6
951,787 - -0.6
951,787 - -0.9
951,787 - +0.9
952,021 - Pf6N2E2_818 0.19 -0.1
952,057 + Pf6N2E2_818 0.22 +0.8
952,057 + Pf6N2E2_818 0.22 +0.1
952,057 + Pf6N2E2_818 0.22 -1.6
952,057 + Pf6N2E2_818 0.22 -0.6
952,058 - Pf6N2E2_818 0.22 -1.7
952,058 - Pf6N2E2_818 0.22 +0.1
952,058 - Pf6N2E2_818 0.22 -1.3
952,156 + Pf6N2E2_818 0.30 -0.2
952,157 - Pf6N2E2_818 0.30 -2.1
952,157 - Pf6N2E2_818 0.30 -0.7
952,157 - Pf6N2E2_818 0.30 -1.1
952,191 - Pf6N2E2_818 0.32 -0.4
952,720 + Pf6N2E2_818 0.74 -1.0
952,743 + Pf6N2E2_818 0.76 +0.7
952,794 + Pf6N2E2_818 0.80 +0.1
952,794 + Pf6N2E2_818 0.80 -2.1
952,794 + Pf6N2E2_818 0.80 -0.6
953,015 + -0.5
953,016 - -2.0
953,025 + +1.5
953,025 + -0.8
953,073 + -1.1
953,073 + +0.2
953,073 + -1.5
953,073 + +0.9
953,073 + -1.5
953,074 - -1.0
953,120 + Pf6N2E2_819 0.19 -0.1
953,148 + Pf6N2E2_819 0.26 +1.1
953,148 + Pf6N2E2_819 0.26 +0.4
953,149 - Pf6N2E2_819 0.27 +0.5
953,312 + Pf6N2E2_819 0.70 -0.1
953,423 + -1.0
953,485 - +0.5
953,519 + +1.0
953,520 - -0.4
953,633 - -1.5
953,633 - -2.4
953,809 - +0.3

Or see this region's nucleotide sequence