Experiment: Calcium chloride 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4909 and Pf6N2E2_4910 are separated by 260 nucleotides Pf6N2E2_4910 and Pf6N2E2_4911 are separated by 11 nucleotides Pf6N2E2_4911 and Pf6N2E2_4912 are separated by 22 nucleotides Pf6N2E2_4912 and Pf6N2E2_4913 are separated by 136 nucleotides
Pf6N2E2_4909 - Outer membrane protein W precursor, at 5,665,816 to 5,666,514
_4909
Pf6N2E2_4910 - FIG003461: hypothetical protein, at 5,666,775 to 5,667,293
_4910
Pf6N2E2_4911 - ABC-type antimicrobial peptide transport system, permease component, at 5,667,305 to 5,668,549
_4911
Pf6N2E2_4912 - Methionine ABC transporter ATP-binding protein, at 5,668,572 to 5,669,282
_4912
Pf6N2E2_4913 - Predicted zinc-binding protein, at 5,669,419 to 5,669,997
_4913
Position (kb) 5667
5668
5669 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5666.320 kb on - strand, within Pf6N2E2_4909 at 5666.434 kb on - strand, within Pf6N2E2_4909 at 5666.434 kb on - strand, within Pf6N2E2_4909 at 5666.554 kb on - strand at 5666.607 kb on + strand at 5666.608 kb on - strand at 5666.608 kb on - strand at 5666.741 kb on + strand at 5666.741 kb on + strand at 5666.741 kb on + strand at 5666.741 kb on + strand at 5666.742 kb on - strand at 5666.742 kb on - strand at 5666.742 kb on - strand at 5666.745 kb on + strand at 5666.745 kb on + strand at 5666.745 kb on + strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.746 kb on - strand at 5666.791 kb on + strand at 5666.791 kb on + strand at 5666.791 kb on + strand at 5666.791 kb on + strand at 5666.792 kb on - strand at 5666.792 kb on - strand at 5666.792 kb on - strand at 5666.792 kb on - strand at 5666.792 kb on - strand at 5666.792 kb on - strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.797 kb on + strand at 5666.798 kb on - strand at 5666.798 kb on - strand at 5666.798 kb on - strand at 5666.798 kb on - strand at 5666.798 kb on - strand at 5666.798 kb on - strand at 5666.798 kb on - strand at 5666.798 kb on - strand at 5666.798 kb on - strand at 5666.881 kb on + strand, within Pf6N2E2_4910 at 5666.890 kb on + strand, within Pf6N2E2_4910 at 5666.890 kb on + strand, within Pf6N2E2_4910 at 5666.890 kb on + strand, within Pf6N2E2_4910 at 5666.891 kb on - strand, within Pf6N2E2_4910 at 5666.891 kb on - strand, within Pf6N2E2_4910 at 5666.891 kb on - strand, within Pf6N2E2_4910 at 5666.891 kb on - strand, within Pf6N2E2_4910 at 5666.958 kb on + strand, within Pf6N2E2_4910 at 5666.958 kb on + strand, within Pf6N2E2_4910 at 5666.966 kb on + strand, within Pf6N2E2_4910 at 5666.967 kb on - strand, within Pf6N2E2_4910 at 5666.980 kb on + strand, within Pf6N2E2_4910 at 5666.980 kb on + strand, within Pf6N2E2_4910 at 5666.981 kb on - strand, within Pf6N2E2_4910 at 5666.981 kb on - strand, within Pf6N2E2_4910 at 5667.038 kb on + strand, within Pf6N2E2_4910 at 5667.040 kb on + strand, within Pf6N2E2_4910 at 5667.040 kb on + strand, within Pf6N2E2_4910 at 5667.040 kb on + strand, within Pf6N2E2_4910 at 5667.041 kb on - strand, within Pf6N2E2_4910 at 5667.309 kb on - strand at 5667.309 kb on - strand at 5667.309 kb on - strand at 5667.417 kb on + strand at 5667.418 kb on - strand at 5667.418 kb on - strand at 5667.444 kb on + strand, within Pf6N2E2_4911 at 5667.444 kb on + strand, within Pf6N2E2_4911 at 5667.444 kb on + strand, within Pf6N2E2_4911 at 5667.444 kb on + strand, within Pf6N2E2_4911 at 5667.445 kb on - strand, within Pf6N2E2_4911 at 5667.453 kb on + strand, within Pf6N2E2_4911 at 5667.453 kb on + strand, within Pf6N2E2_4911 at 5667.454 kb on - strand, within Pf6N2E2_4911 at 5667.468 kb on + strand, within Pf6N2E2_4911 at 5667.468 kb on + strand, within Pf6N2E2_4911 at 5667.468 kb on + strand, within Pf6N2E2_4911 at 5667.468 kb on + strand, within Pf6N2E2_4911 at 5667.469 kb on - strand, within Pf6N2E2_4911 at 5667.495 kb on + strand, within Pf6N2E2_4911 at 5667.495 kb on + strand, within Pf6N2E2_4911 at 5667.495 kb on + strand, within Pf6N2E2_4911 at 5667.495 kb on + strand, within Pf6N2E2_4911 at 5667.495 kb on + strand, within Pf6N2E2_4911 at 5667.495 kb on + strand, within Pf6N2E2_4911 at 5667.495 kb on + strand, within Pf6N2E2_4911 at 5667.496 kb on - strand, within Pf6N2E2_4911 at 5667.496 kb on - strand, within Pf6N2E2_4911 at 5667.496 kb on - strand, within Pf6N2E2_4911 at 5667.496 kb on - strand, within Pf6N2E2_4911 at 5667.496 kb on - strand, within Pf6N2E2_4911 at 5668.076 kb on + strand, within Pf6N2E2_4911 at 5668.076 kb on + strand, within Pf6N2E2_4911 at 5668.098 kb on + strand, within Pf6N2E2_4911 at 5668.098 kb on + strand, within Pf6N2E2_4911 at 5668.098 kb on + strand, within Pf6N2E2_4911 at 5668.098 kb on + strand, within Pf6N2E2_4911 at 5668.098 kb on + strand, within Pf6N2E2_4911 at 5668.099 kb on - strand, within Pf6N2E2_4911 at 5668.099 kb on - strand, within Pf6N2E2_4911 at 5668.099 kb on - strand, within Pf6N2E2_4911 at 5668.198 kb on - strand, within Pf6N2E2_4911 at 5668.203 kb on + strand, within Pf6N2E2_4911 at 5668.203 kb on + strand, within Pf6N2E2_4911 at 5668.215 kb on + strand, within Pf6N2E2_4911 at 5668.215 kb on + strand, within Pf6N2E2_4911 at 5668.215 kb on + strand, within Pf6N2E2_4911 at 5668.216 kb on - strand, within Pf6N2E2_4911 at 5668.216 kb on - strand, within Pf6N2E2_4911 at 5668.216 kb on - strand, within Pf6N2E2_4911 at 5668.298 kb on - strand, within Pf6N2E2_4911 at 5668.365 kb on + strand, within Pf6N2E2_4911 at 5668.365 kb on + strand, within Pf6N2E2_4911 at 5668.365 kb on + strand, within Pf6N2E2_4911 at 5668.365 kb on + strand, within Pf6N2E2_4911 at 5668.366 kb on - strand, within Pf6N2E2_4911 at 5668.453 kb on + strand at 5668.454 kb on - strand at 5668.457 kb on + strand at 5668.458 kb on - strand at 5668.553 kb on + strand at 5668.554 kb on - strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.566 kb on + strand at 5668.567 kb on - strand at 5668.567 kb on - strand at 5668.567 kb on - strand at 5668.567 kb on - strand at 5668.567 kb on - strand at 5669.018 kb on + strand, within Pf6N2E2_4912 at 5669.018 kb on + strand, within Pf6N2E2_4912 at 5669.018 kb on + strand, within Pf6N2E2_4912 at 5669.018 kb on + strand, within Pf6N2E2_4912 at 5669.019 kb on - strand, within Pf6N2E2_4912 at 5669.019 kb on - strand, within Pf6N2E2_4912 at 5669.019 kb on - strand, within Pf6N2E2_4912 at 5669.019 kb on - strand, within Pf6N2E2_4912 at 5669.019 kb on - strand, within Pf6N2E2_4912 at 5669.020 kb on + strand, within Pf6N2E2_4912 at 5669.020 kb on + strand, within Pf6N2E2_4912 at 5669.020 kb on + strand, within Pf6N2E2_4912 at 5669.020 kb on + strand, within Pf6N2E2_4912 at 5669.020 kb on + strand, within Pf6N2E2_4912 at 5669.021 kb on - strand, within Pf6N2E2_4912 at 5669.021 kb on - strand, within Pf6N2E2_4912 at 5669.250 kb on + strand at 5669.250 kb on + strand at 5669.250 kb on + strand at 5669.250 kb on + strand at 5669.250 kb on + strand at 5669.251 kb on - strand at 5669.282 kb on + strand at 5669.283 kb on - strand at 5669.283 kb on - strand at 5669.299 kb on + strand at 5669.416 kb on + strand at 5669.416 kb on + strand at 5669.417 kb on - strand at 5669.417 kb on - strand at 5669.420 kb on + strand at 5669.420 kb on + strand at 5669.420 kb on + strand at 5669.420 kb on + strand at 5669.420 kb on + strand at 5669.421 kb on - strand at 5669.421 kb on - strand at 5669.421 kb on - strand at 5669.488 kb on + strand, within Pf6N2E2_4913 at 5669.488 kb on + strand, within Pf6N2E2_4913 at 5669.488 kb on + strand, within Pf6N2E2_4913 at 5669.489 kb on - strand, within Pf6N2E2_4913 at 5669.489 kb on - strand, within Pf6N2E2_4913
Per-strain Table
Position Strand Gene LocusTag Fraction Calcium chloride 0.0125 M remove 5,666,320 - Pf6N2E2_4909 0.72 +0.3 5,666,434 - Pf6N2E2_4909 0.88 +0.2 5,666,434 - Pf6N2E2_4909 0.88 +0.6 5,666,554 - -0.5 5,666,607 + +0.2 5,666,608 - +0.1 5,666,608 - +1.1 5,666,741 + +0.0 5,666,741 + +0.5 5,666,741 + +2.0 5,666,741 + +1.6 5,666,742 - +0.5 5,666,742 - +0.1 5,666,742 - +0.5 5,666,745 + +0.5 5,666,745 + +0.2 5,666,745 + +0.8 5,666,746 - -0.1 5,666,746 - -0.6 5,666,746 - +0.8 5,666,746 - +0.3 5,666,746 - +0.4 5,666,746 - -0.5 5,666,746 - -0.3 5,666,746 - +0.4 5,666,746 - +2.2 5,666,746 - +0.3 5,666,746 - +0.0 5,666,746 - +0.4 5,666,746 - +0.3 5,666,791 + +0.1 5,666,791 + +0.1 5,666,791 + +0.0 5,666,791 + -0.5 5,666,792 - +0.2 5,666,792 - -1.1 5,666,792 - +1.1 5,666,792 - +0.6 5,666,792 - +0.3 5,666,792 - +0.0 5,666,797 + +0.3 5,666,797 + +0.5 5,666,797 + -0.2 5,666,797 + -0.1 5,666,797 + +1.1 5,666,797 + -0.8 5,666,797 + +0.4 5,666,797 + -0.3 5,666,797 + -0.5 5,666,797 + -0.7 5,666,797 + +0.8 5,666,797 + -0.5 5,666,797 + -0.2 5,666,797 + -0.3 5,666,798 - -1.3 5,666,798 - -0.2 5,666,798 - +1.0 5,666,798 - +0.3 5,666,798 - +0.9 5,666,798 - -1.5 5,666,798 - -0.3 5,666,798 - -0.3 5,666,798 - -0.2 5,666,881 + Pf6N2E2_4910 0.20 +0.3 5,666,890 + Pf6N2E2_4910 0.22 -0.4 5,666,890 + Pf6N2E2_4910 0.22 -0.0 5,666,890 + Pf6N2E2_4910 0.22 +0.6 5,666,891 - Pf6N2E2_4910 0.22 +0.3 5,666,891 - Pf6N2E2_4910 0.22 +0.4 5,666,891 - Pf6N2E2_4910 0.22 -1.6 5,666,891 - Pf6N2E2_4910 0.22 +0.3 5,666,958 + Pf6N2E2_4910 0.35 +0.4 5,666,958 + Pf6N2E2_4910 0.35 -1.1 5,666,966 + Pf6N2E2_4910 0.37 +0.2 5,666,967 - Pf6N2E2_4910 0.37 +0.1 5,666,980 + Pf6N2E2_4910 0.39 -0.5 5,666,980 + Pf6N2E2_4910 0.39 +0.4 5,666,981 - Pf6N2E2_4910 0.40 -0.5 5,666,981 - Pf6N2E2_4910 0.40 +0.7 5,667,038 + Pf6N2E2_4910 0.51 +0.4 5,667,040 + Pf6N2E2_4910 0.51 -0.2 5,667,040 + Pf6N2E2_4910 0.51 +0.7 5,667,040 + Pf6N2E2_4910 0.51 +0.7 5,667,041 - Pf6N2E2_4910 0.51 -1.2 5,667,309 - +1.1 5,667,309 - +0.3 5,667,309 - -0.5 5,667,417 + +0.0 5,667,418 - +0.3 5,667,418 - +0.0 5,667,444 + Pf6N2E2_4911 0.11 -1.4 5,667,444 + Pf6N2E2_4911 0.11 +0.3 5,667,444 + Pf6N2E2_4911 0.11 +0.1 5,667,444 + Pf6N2E2_4911 0.11 +0.6 5,667,445 - Pf6N2E2_4911 0.11 +1.2 5,667,453 + Pf6N2E2_4911 0.12 -0.3 5,667,453 + Pf6N2E2_4911 0.12 +0.3 5,667,454 - Pf6N2E2_4911 0.12 +0.1 5,667,468 + Pf6N2E2_4911 0.13 -0.1 5,667,468 + Pf6N2E2_4911 0.13 +1.3 5,667,468 + Pf6N2E2_4911 0.13 -0.4 5,667,468 + Pf6N2E2_4911 0.13 +0.5 5,667,469 - Pf6N2E2_4911 0.13 +0.5 5,667,495 + Pf6N2E2_4911 0.15 -0.1 5,667,495 + Pf6N2E2_4911 0.15 +0.5 5,667,495 + Pf6N2E2_4911 0.15 +1.2 5,667,495 + Pf6N2E2_4911 0.15 +0.4 5,667,495 + Pf6N2E2_4911 0.15 +0.3 5,667,495 + Pf6N2E2_4911 0.15 +0.8 5,667,495 + Pf6N2E2_4911 0.15 +0.2 5,667,496 - Pf6N2E2_4911 0.15 +0.2 5,667,496 - Pf6N2E2_4911 0.15 -0.6 5,667,496 - Pf6N2E2_4911 0.15 +0.3 5,667,496 - Pf6N2E2_4911 0.15 +0.3 5,667,496 - Pf6N2E2_4911 0.15 -0.2 5,668,076 + Pf6N2E2_4911 0.62 +0.8 5,668,076 + Pf6N2E2_4911 0.62 +0.2 5,668,098 + Pf6N2E2_4911 0.64 +0.6 5,668,098 + Pf6N2E2_4911 0.64 -0.1 5,668,098 + Pf6N2E2_4911 0.64 -1.3 5,668,098 + Pf6N2E2_4911 0.64 -0.6 5,668,098 + Pf6N2E2_4911 0.64 +0.2 5,668,099 - Pf6N2E2_4911 0.64 +0.0 5,668,099 - Pf6N2E2_4911 0.64 +0.1 5,668,099 - Pf6N2E2_4911 0.64 -1.3 5,668,198 - Pf6N2E2_4911 0.72 +0.5 5,668,203 + Pf6N2E2_4911 0.72 +0.5 5,668,203 + Pf6N2E2_4911 0.72 +0.9 5,668,215 + Pf6N2E2_4911 0.73 -0.7 5,668,215 + Pf6N2E2_4911 0.73 +0.4 5,668,215 + Pf6N2E2_4911 0.73 +1.1 5,668,216 - Pf6N2E2_4911 0.73 +0.8 5,668,216 - Pf6N2E2_4911 0.73 -0.4 5,668,216 - Pf6N2E2_4911 0.73 +0.7 5,668,298 - Pf6N2E2_4911 0.80 -0.0 5,668,365 + Pf6N2E2_4911 0.85 +1.0 5,668,365 + Pf6N2E2_4911 0.85 -0.0 5,668,365 + Pf6N2E2_4911 0.85 +0.6 5,668,365 + Pf6N2E2_4911 0.85 +1.1 5,668,366 - Pf6N2E2_4911 0.85 +0.2 5,668,453 + +0.2 5,668,454 - -1.3 5,668,457 + -0.5 5,668,458 - +0.4 5,668,553 + +0.5 5,668,554 - +0.7 5,668,566 + +0.4 5,668,566 + +0.7 5,668,566 + +0.2 5,668,566 + -0.5 5,668,566 + -0.1 5,668,566 + +0.2 5,668,566 + +0.1 5,668,566 + +0.5 5,668,566 + +0.7 5,668,566 + -0.8 5,668,566 + +0.3 5,668,566 + +0.6 5,668,566 + -0.4 5,668,567 - -0.6 5,668,567 - -0.4 5,668,567 - +0.7 5,668,567 - +0.6 5,668,567 - -0.5 5,669,018 + Pf6N2E2_4912 0.63 +0.7 5,669,018 + Pf6N2E2_4912 0.63 +0.5 5,669,018 + Pf6N2E2_4912 0.63 +0.2 5,669,018 + Pf6N2E2_4912 0.63 +1.1 5,669,019 - Pf6N2E2_4912 0.63 +0.0 5,669,019 - Pf6N2E2_4912 0.63 +0.5 5,669,019 - Pf6N2E2_4912 0.63 +0.4 5,669,019 - Pf6N2E2_4912 0.63 +0.8 5,669,019 - Pf6N2E2_4912 0.63 +0.9 5,669,020 + Pf6N2E2_4912 0.63 -0.6 5,669,020 + Pf6N2E2_4912 0.63 +1.0 5,669,020 + Pf6N2E2_4912 0.63 -0.6 5,669,020 + Pf6N2E2_4912 0.63 +0.7 5,669,020 + Pf6N2E2_4912 0.63 +0.1 5,669,021 - Pf6N2E2_4912 0.63 +1.2 5,669,021 - Pf6N2E2_4912 0.63 +0.2 5,669,250 + +0.2 5,669,250 + +0.9 5,669,250 + +0.7 5,669,250 + +0.6 5,669,250 + +0.6 5,669,251 - +0.1 5,669,282 + +0.1 5,669,283 - -2.1 5,669,283 - -0.1 5,669,299 + +0.2 5,669,416 + +0.0 5,669,416 + +0.1 5,669,417 - -1.1 5,669,417 - +1.0 5,669,420 + +0.1 5,669,420 + +0.9 5,669,420 + +0.5 5,669,420 + +0.9 5,669,420 + +0.4 5,669,421 - +0.9 5,669,421 - -0.7 5,669,421 - -1.0 5,669,488 + Pf6N2E2_4913 0.12 +1.1 5,669,488 + Pf6N2E2_4913 0.12 -1.1 5,669,488 + Pf6N2E2_4913 0.12 -0.2 5,669,489 - Pf6N2E2_4913 0.12 +0.1 5,669,489 - Pf6N2E2_4913 0.12 +1.3
Or see this region's nucleotide sequence