Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4197

Experiment: Calcium chloride 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4196 and Pf6N2E2_4197 are separated by 44 nucleotidesPf6N2E2_4197 and Pf6N2E2_4198 are separated by 50 nucleotides Pf6N2E2_4196 - DNA gyrase subunit B (EC 5.99.1.3), at 4,882,754 to 4,885,132 _4196 Pf6N2E2_4197 - DNA recombination and repair protein RecF, at 4,885,177 to 4,886,250 _4197 Pf6N2E2_4198 - DNA polymerase III beta subunit (EC 2.7.7.7), at 4,886,301 to 4,887,404 _4198 Position (kb) 4885 4886 4887Strain fitness (log2 ratio) -3 -2 -1 0 1at 4885.268 kb on - strandat 4885.280 kb on - strandat 4885.280 kb on - strandat 4885.280 kb on - strandat 4885.280 kb on - strandat 4885.280 kb on - strandat 4885.307 kb on - strand, within Pf6N2E2_4197at 4885.307 kb on - strand, within Pf6N2E2_4197at 4885.307 kb on - strand, within Pf6N2E2_4197at 4885.380 kb on - strand, within Pf6N2E2_4197at 4885.380 kb on - strand, within Pf6N2E2_4197at 4885.380 kb on - strand, within Pf6N2E2_4197at 4885.384 kb on - strand, within Pf6N2E2_4197at 4885.384 kb on - strand, within Pf6N2E2_4197at 4885.384 kb on - strand, within Pf6N2E2_4197at 4885.384 kb on - strand, within Pf6N2E2_4197at 4885.384 kb on - strand, within Pf6N2E2_4197at 4885.384 kb on - strand, within Pf6N2E2_4197at 4885.384 kb on - strand, within Pf6N2E2_4197at 4885.448 kb on - strand, within Pf6N2E2_4197at 4885.617 kb on - strand, within Pf6N2E2_4197at 4885.617 kb on - strand, within Pf6N2E2_4197at 4885.617 kb on - strand, within Pf6N2E2_4197at 4885.617 kb on - strand, within Pf6N2E2_4197at 4885.617 kb on - strand, within Pf6N2E2_4197at 4885.692 kb on - strand, within Pf6N2E2_4197at 4885.692 kb on - strand, within Pf6N2E2_4197at 4885.692 kb on - strand, within Pf6N2E2_4197at 4885.692 kb on - strand, within Pf6N2E2_4197at 4885.692 kb on - strand, within Pf6N2E2_4197at 4885.692 kb on - strand, within Pf6N2E2_4197at 4885.704 kb on - strand, within Pf6N2E2_4197at 4885.774 kb on - strand, within Pf6N2E2_4197at 4885.906 kb on + strand, within Pf6N2E2_4197at 4885.906 kb on + strand, within Pf6N2E2_4197at 4885.906 kb on + strand, within Pf6N2E2_4197at 4885.907 kb on - strand, within Pf6N2E2_4197at 4886.037 kb on + strand, within Pf6N2E2_4197at 4886.093 kb on + strand, within Pf6N2E2_4197at 4886.093 kb on + strand, within Pf6N2E2_4197at 4886.094 kb on - strand, within Pf6N2E2_4197at 4886.272 kb on + strandat 4886.273 kb on - strandat 4886.273 kb on - strandat 4886.273 kb on - strandat 4886.273 kb on - strandat 4886.282 kb on + strandat 4886.282 kb on + strandat 4886.282 kb on + strandat 4886.282 kb on + strandat 4886.282 kb on + strandat 4886.282 kb on + strandat 4886.282 kb on + strandat 4886.282 kb on + strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.283 kb on - strandat 4886.302 kb on + strandat 4886.302 kb on + strandat 4886.302 kb on + strandat 4886.302 kb on + strandat 4886.303 kb on - strandat 4886.303 kb on - strandat 4886.303 kb on - strandat 4886.303 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Calcium chloride 0.0125 M
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4,885,268 - -0.5
4,885,280 - -0.8
4,885,280 - -0.4
4,885,280 - -1.4
4,885,280 - -2.0
4,885,280 - -0.7
4,885,307 - Pf6N2E2_4197 0.12 +0.2
4,885,307 - Pf6N2E2_4197 0.12 -1.7
4,885,307 - Pf6N2E2_4197 0.12 -1.7
4,885,380 - Pf6N2E2_4197 0.19 +0.7
4,885,380 - Pf6N2E2_4197 0.19 -2.1
4,885,380 - Pf6N2E2_4197 0.19 +0.3
4,885,384 - Pf6N2E2_4197 0.19 -1.8
4,885,384 - Pf6N2E2_4197 0.19 +0.0
4,885,384 - Pf6N2E2_4197 0.19 -2.4
4,885,384 - Pf6N2E2_4197 0.19 -1.1
4,885,384 - Pf6N2E2_4197 0.19 -0.9
4,885,384 - Pf6N2E2_4197 0.19 -0.9
4,885,384 - Pf6N2E2_4197 0.19 -1.3
4,885,448 - Pf6N2E2_4197 0.25 -1.1
4,885,617 - Pf6N2E2_4197 0.41 -0.3
4,885,617 - Pf6N2E2_4197 0.41 -0.7
4,885,617 - Pf6N2E2_4197 0.41 -0.8
4,885,617 - Pf6N2E2_4197 0.41 -0.4
4,885,617 - Pf6N2E2_4197 0.41 -1.3
4,885,692 - Pf6N2E2_4197 0.48 -0.3
4,885,692 - Pf6N2E2_4197 0.48 -0.0
4,885,692 - Pf6N2E2_4197 0.48 -1.5
4,885,692 - Pf6N2E2_4197 0.48 -2.6
4,885,692 - Pf6N2E2_4197 0.48 -0.8
4,885,692 - Pf6N2E2_4197 0.48 -3.0
4,885,704 - Pf6N2E2_4197 0.49 -0.8
4,885,774 - Pf6N2E2_4197 0.56 -0.2
4,885,906 + Pf6N2E2_4197 0.68 -0.4
4,885,906 + Pf6N2E2_4197 0.68 -1.7
4,885,906 + Pf6N2E2_4197 0.68 -0.1
4,885,907 - Pf6N2E2_4197 0.68 -0.9
4,886,037 + Pf6N2E2_4197 0.80 -1.3
4,886,093 + Pf6N2E2_4197 0.85 -1.1
4,886,093 + Pf6N2E2_4197 0.85 -1.4
4,886,094 - Pf6N2E2_4197 0.85 -0.3
4,886,272 + -0.8
4,886,273 - -1.9
4,886,273 - -1.2
4,886,273 - -0.3
4,886,273 - -0.3
4,886,282 + -0.6
4,886,282 + -0.9
4,886,282 + -0.1
4,886,282 + -0.8
4,886,282 + -0.1
4,886,282 + -0.1
4,886,282 + -0.8
4,886,282 + -1.9
4,886,283 - -0.1
4,886,283 - +1.2
4,886,283 - -0.6
4,886,283 - -1.1
4,886,283 - -0.0
4,886,283 - +0.1
4,886,283 - +0.4
4,886,283 - -0.8
4,886,283 - -0.8
4,886,283 - -0.8
4,886,283 - -0.5
4,886,283 - -0.3
4,886,283 - +0.6
4,886,283 - +0.3
4,886,283 - -0.7
4,886,283 - -0.4
4,886,283 - -0.1
4,886,302 + +0.8
4,886,302 + -0.7
4,886,302 + -0.3
4,886,302 + -1.2
4,886,303 - -0.7
4,886,303 - +1.7
4,886,303 - -1.1
4,886,303 - -0.7

Or see this region's nucleotide sequence