Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_198

Experiment: Calcium chloride 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_195 and Pf6N2E2_196 are separated by 205 nucleotidesPf6N2E2_196 and Pf6N2E2_197 overlap by 4 nucleotidesPf6N2E2_197 and Pf6N2E2_198 are separated by 106 nucleotidesPf6N2E2_198 and Pf6N2E2_199 are separated by 9 nucleotidesPf6N2E2_199 and Pf6N2E2_200 are separated by 60 nucleotides Pf6N2E2_195 - hypothetical protein, at 247,566 to 249,515 _195 Pf6N2E2_196 - hypothetical protein, at 249,721 to 249,948 _196 Pf6N2E2_197 - Death on curing protein, Doc toxin, at 249,945 to 250,262 _197 Pf6N2E2_198 - hypothetical protein, at 250,369 to 250,527 _198 Pf6N2E2_199 - hypothetical protein, at 250,537 to 250,800 _199 Pf6N2E2_200 - Possible glycosyltransferase, at 250,861 to 251,967 _200 Position (kb) 250 251Strain fitness (log2 ratio) -2 -1 0 1 2at 249.472 kb on + strandat 249.472 kb on + strandat 249.472 kb on + strandat 249.472 kb on + strandat 249.472 kb on + strandat 249.472 kb on + strandat 249.472 kb on + strandat 249.472 kb on + strandat 249.473 kb on - strandat 249.473 kb on - strandat 249.566 kb on + strandat 249.566 kb on + strandat 249.567 kb on - strandat 249.567 kb on - strandat 249.576 kb on + strandat 249.576 kb on + strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.677 kb on - strandat 249.717 kb on + strandat 249.717 kb on + strandat 249.803 kb on - strand, within Pf6N2E2_196at 249.991 kb on + strand, within Pf6N2E2_197at 249.991 kb on + strand, within Pf6N2E2_197at 249.991 kb on + strand, within Pf6N2E2_197at 249.992 kb on - strand, within Pf6N2E2_197at 250.008 kb on + strand, within Pf6N2E2_197at 250.009 kb on - strand, within Pf6N2E2_197at 250.009 kb on - strand, within Pf6N2E2_197at 250.012 kb on - strand, within Pf6N2E2_197at 250.012 kb on - strand, within Pf6N2E2_197at 250.071 kb on + strand, within Pf6N2E2_197at 250.071 kb on + strand, within Pf6N2E2_197at 250.071 kb on + strand, within Pf6N2E2_197at 250.071 kb on + strand, within Pf6N2E2_197at 250.072 kb on - strand, within Pf6N2E2_197at 250.072 kb on - strand, within Pf6N2E2_197at 250.072 kb on - strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.103 kb on + strand, within Pf6N2E2_197at 250.104 kb on - strand, within Pf6N2E2_197at 250.114 kb on - strand, within Pf6N2E2_197at 250.171 kb on - strand, within Pf6N2E2_197at 250.182 kb on + strand, within Pf6N2E2_197at 250.182 kb on + strand, within Pf6N2E2_197at 250.182 kb on + strand, within Pf6N2E2_197at 250.182 kb on + strand, within Pf6N2E2_197at 250.211 kb on - strand, within Pf6N2E2_197at 250.429 kb on + strand, within Pf6N2E2_198at 250.430 kb on - strand, within Pf6N2E2_198at 250.430 kb on - strand, within Pf6N2E2_198at 250.430 kb on - strand, within Pf6N2E2_198at 250.455 kb on + strand, within Pf6N2E2_198at 250.455 kb on + strand, within Pf6N2E2_198at 250.455 kb on + strand, within Pf6N2E2_198at 250.456 kb on - strand, within Pf6N2E2_198at 250.456 kb on - strand, within Pf6N2E2_198at 250.456 kb on - strand, within Pf6N2E2_198at 250.480 kb on + strand, within Pf6N2E2_198at 250.748 kb on + strand, within Pf6N2E2_199at 250.749 kb on - strand, within Pf6N2E2_199at 250.749 kb on - strand, within Pf6N2E2_199at 250.749 kb on - strand, within Pf6N2E2_199at 250.777 kb on + strandat 250.778 kb on - strandat 250.787 kb on + strandat 250.787 kb on + strandat 250.809 kb on + strandat 250.810 kb on - strandat 250.843 kb on + strandat 251.087 kb on + strand, within Pf6N2E2_200at 251.088 kb on - strand, within Pf6N2E2_200at 251.222 kb on - strand, within Pf6N2E2_200at 251.222 kb on - strand, within Pf6N2E2_200at 251.422 kb on + strand, within Pf6N2E2_200at 251.423 kb on - strand, within Pf6N2E2_200at 251.476 kb on + strand, within Pf6N2E2_200at 251.476 kb on + strand, within Pf6N2E2_200at 251.477 kb on - strand, within Pf6N2E2_200

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Per-strain Table

Position Strand Gene LocusTag Fraction Calcium chloride 0.0125 M
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249,472 + +0.4
249,472 + +0.1
249,472 + +1.0
249,472 + -0.7
249,472 + -0.2
249,472 + +0.3
249,472 + -0.3
249,472 + +0.7
249,473 - +0.3
249,473 - -0.3
249,566 + -0.7
249,566 + +0.2
249,567 - -0.5
249,567 - -0.0
249,576 + -0.2
249,576 + -1.2
249,577 - -0.1
249,577 - +0.4
249,577 - +0.6
249,577 - +0.5
249,577 - -1.0
249,577 - -1.1
249,577 - -0.0
249,677 - -0.7
249,717 + -0.4
249,717 + +0.0
249,803 - Pf6N2E2_196 0.36 +0.0
249,991 + Pf6N2E2_197 0.14 +0.2
249,991 + Pf6N2E2_197 0.14 -0.4
249,991 + Pf6N2E2_197 0.14 +1.0
249,992 - Pf6N2E2_197 0.15 +0.7
250,008 + Pf6N2E2_197 0.20 +1.1
250,009 - Pf6N2E2_197 0.20 -0.0
250,009 - Pf6N2E2_197 0.20 +1.0
250,012 - Pf6N2E2_197 0.21 -0.3
250,012 - Pf6N2E2_197 0.21 -1.0
250,071 + Pf6N2E2_197 0.40 -0.0
250,071 + Pf6N2E2_197 0.40 +0.1
250,071 + Pf6N2E2_197 0.40 +1.3
250,071 + Pf6N2E2_197 0.40 +0.0
250,072 - Pf6N2E2_197 0.40 -0.1
250,072 - Pf6N2E2_197 0.40 +1.7
250,072 - Pf6N2E2_197 0.40 -0.4
250,073 + Pf6N2E2_197 0.40 +0.4
250,073 + Pf6N2E2_197 0.40 -0.5
250,073 + Pf6N2E2_197 0.40 -0.3
250,073 + Pf6N2E2_197 0.40 -0.8
250,073 + Pf6N2E2_197 0.40 -1.4
250,074 - Pf6N2E2_197 0.41 -0.7
250,074 - Pf6N2E2_197 0.41 -1.0
250,074 - Pf6N2E2_197 0.41 -1.1
250,074 - Pf6N2E2_197 0.41 +0.5
250,074 - Pf6N2E2_197 0.41 -0.4
250,103 + Pf6N2E2_197 0.50 -0.1
250,104 - Pf6N2E2_197 0.50 -1.2
250,114 - Pf6N2E2_197 0.53 +0.5
250,171 - Pf6N2E2_197 0.71 +1.0
250,182 + Pf6N2E2_197 0.75 -0.7
250,182 + Pf6N2E2_197 0.75 -1.2
250,182 + Pf6N2E2_197 0.75 +1.0
250,182 + Pf6N2E2_197 0.75 -0.3
250,211 - Pf6N2E2_197 0.84 -2.0
250,429 + Pf6N2E2_198 0.38 -0.5
250,430 - Pf6N2E2_198 0.38 -1.0
250,430 - Pf6N2E2_198 0.38 -0.1
250,430 - Pf6N2E2_198 0.38 -0.2
250,455 + Pf6N2E2_198 0.54 -0.8
250,455 + Pf6N2E2_198 0.54 -0.7
250,455 + Pf6N2E2_198 0.54 -0.2
250,456 - Pf6N2E2_198 0.55 -0.7
250,456 - Pf6N2E2_198 0.55 -1.6
250,456 - Pf6N2E2_198 0.55 -1.4
250,480 + Pf6N2E2_198 0.70 +0.1
250,748 + Pf6N2E2_199 0.80 +0.4
250,749 - Pf6N2E2_199 0.80 -0.1
250,749 - Pf6N2E2_199 0.80 +0.4
250,749 - Pf6N2E2_199 0.80 +0.5
250,777 + +0.0
250,778 - +1.3
250,787 + +1.8
250,787 + -0.3
250,809 + -0.2
250,810 - +0.7
250,843 + -1.4
251,087 + Pf6N2E2_200 0.20 +0.6
251,088 - Pf6N2E2_200 0.21 -0.7
251,222 - Pf6N2E2_200 0.33 -0.8
251,222 - Pf6N2E2_200 0.33 -0.0
251,422 + Pf6N2E2_200 0.51 -1.0
251,423 - Pf6N2E2_200 0.51 +0.2
251,476 + Pf6N2E2_200 0.56 +0.7
251,476 + Pf6N2E2_200 0.56 -0.7
251,477 - Pf6N2E2_200 0.56 -0.4

Or see this region's nucleotide sequence