Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19135 and IAI47_19140 are separated by 307 nucleotides IAI47_19140 and IAI47_19145 are separated by 93 nucleotides
IAI47_19135: IAI47_19135 - DMT family transporter, at 53,182 to 54,123
_19135
IAI47_19140: IAI47_19140 - helix-turn-helix transcriptional regulator, at 54,431 to 54,757
_19140
IAI47_19145: IAI47_19145 - SDR family oxidoreductase, at 54,851 to 55,600
_19145
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 53.464 kb on + strand, within IAI47_19135 at 53.464 kb on + strand, within IAI47_19135 at 53.464 kb on + strand, within IAI47_19135 at 53.465 kb on - strand, within IAI47_19135 at 53.465 kb on - strand, within IAI47_19135 at 53.465 kb on - strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.495 kb on + strand, within IAI47_19135 at 53.496 kb on - strand, within IAI47_19135 at 53.496 kb on - strand, within IAI47_19135 at 53.496 kb on - strand, within IAI47_19135 at 53.496 kb on - strand, within IAI47_19135 at 53.496 kb on - strand, within IAI47_19135 at 53.496 kb on - strand, within IAI47_19135 at 53.633 kb on + strand, within IAI47_19135 at 53.634 kb on - strand, within IAI47_19135 at 53.721 kb on - strand, within IAI47_19135 at 53.745 kb on + strand, within IAI47_19135 at 53.745 kb on + strand, within IAI47_19135 at 53.745 kb on + strand, within IAI47_19135 at 53.745 kb on + strand, within IAI47_19135 at 53.745 kb on + strand, within IAI47_19135 at 53.746 kb on - strand, within IAI47_19135 at 53.804 kb on + strand, within IAI47_19135 at 53.819 kb on + strand, within IAI47_19135 at 53.819 kb on + strand, within IAI47_19135 at 53.819 kb on + strand, within IAI47_19135 at 53.820 kb on - strand, within IAI47_19135 at 53.883 kb on - strand, within IAI47_19135 at 53.883 kb on - strand, within IAI47_19135 at 53.915 kb on - strand, within IAI47_19135 at 53.924 kb on - strand, within IAI47_19135 at 53.937 kb on - strand, within IAI47_19135 at 53.961 kb on + strand, within IAI47_19135 at 53.974 kb on + strand, within IAI47_19135 at 53.974 kb on + strand, within IAI47_19135 at 53.974 kb on + strand, within IAI47_19135 at 53.974 kb on + strand, within IAI47_19135 at 53.974 kb on + strand, within IAI47_19135 at 54.012 kb on + strand, within IAI47_19135 at 54.012 kb on + strand, within IAI47_19135 at 54.013 kb on - strand, within IAI47_19135 at 54.086 kb on + strand at 54.086 kb on + strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.087 kb on - strand at 54.147 kb on + strand at 54.152 kb on - strand at 54.215 kb on + strand at 54.215 kb on + strand at 54.215 kb on + strand at 54.216 kb on - strand at 54.216 kb on - strand at 54.216 kb on - strand at 54.217 kb on + strand at 54.217 kb on + strand at 54.218 kb on - strand at 54.218 kb on - strand at 54.227 kb on + strand at 54.273 kb on - strand at 54.273 kb on - strand at 54.273 kb on - strand at 54.299 kb on + strand at 54.299 kb on + strand at 54.299 kb on + strand at 54.299 kb on + strand at 54.299 kb on + strand at 54.299 kb on + strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.300 kb on - strand at 54.301 kb on + strand at 54.301 kb on + strand at 54.301 kb on + strand at 54.302 kb on - strand at 54.302 kb on - strand at 54.302 kb on - strand at 54.302 kb on - strand at 54.302 kb on - strand at 54.302 kb on - strand at 54.302 kb on - strand at 54.302 kb on - strand at 54.305 kb on + strand at 54.305 kb on + strand at 54.305 kb on + strand at 54.305 kb on + strand at 54.305 kb on + strand at 54.305 kb on + strand at 54.306 kb on - strand at 54.306 kb on - strand at 54.306 kb on - strand at 54.306 kb on - strand at 54.306 kb on - strand at 54.383 kb on + strand at 54.385 kb on + strand at 54.385 kb on + strand at 54.385 kb on + strand at 54.385 kb on + strand at 54.386 kb on - strand at 54.386 kb on - strand at 54.386 kb on - strand at 54.386 kb on - strand at 54.386 kb on - strand at 54.388 kb on + strand at 54.389 kb on - strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.432 kb on + strand at 54.433 kb on - strand at 54.433 kb on - strand at 54.433 kb on - strand at 54.466 kb on + strand, within IAI47_19140 at 54.494 kb on + strand, within IAI47_19140 at 54.494 kb on + strand, within IAI47_19140 at 54.494 kb on + strand, within IAI47_19140 at 54.495 kb on - strand, within IAI47_19140 at 54.534 kb on + strand, within IAI47_19140 at 54.534 kb on + strand, within IAI47_19140 at 54.535 kb on - strand, within IAI47_19140 at 54.535 kb on - strand, within IAI47_19140 at 54.535 kb on - strand, within IAI47_19140 at 54.535 kb on - strand, within IAI47_19140 at 54.535 kb on - strand, within IAI47_19140 at 54.573 kb on - strand, within IAI47_19140 at 54.573 kb on - strand, within IAI47_19140 at 54.593 kb on + strand, within IAI47_19140 at 54.631 kb on + strand, within IAI47_19140 at 54.632 kb on - strand, within IAI47_19140 at 54.632 kb on - strand, within IAI47_19140 at 54.632 kb on - strand, within IAI47_19140 at 54.632 kb on - strand, within IAI47_19140 at 54.632 kb on - strand, within IAI47_19140 at 54.632 kb on - strand, within IAI47_19140 at 54.632 kb on - strand, within IAI47_19140 at 54.689 kb on + strand, within IAI47_19140 at 54.689 kb on + strand, within IAI47_19140 at 54.689 kb on + strand, within IAI47_19140 at 54.690 kb on - strand, within IAI47_19140 at 54.694 kb on + strand, within IAI47_19140 at 54.694 kb on + strand, within IAI47_19140 at 54.695 kb on - strand, within IAI47_19140 at 54.695 kb on - strand, within IAI47_19140 at 54.695 kb on - strand, within IAI47_19140 at 54.718 kb on + strand, within IAI47_19140 at 54.718 kb on + strand, within IAI47_19140 at 54.718 kb on + strand, within IAI47_19140 at 54.718 kb on + strand, within IAI47_19140 at 54.719 kb on - strand, within IAI47_19140 at 54.719 kb on - strand, within IAI47_19140 at 54.719 kb on - strand, within IAI47_19140 at 54.719 kb on - strand, within IAI47_19140 at 54.721 kb on - strand, within IAI47_19140 at 54.757 kb on + strand at 54.757 kb on + strand at 54.771 kb on + strand at 54.772 kb on - strand at 54.799 kb on + strand at 54.815 kb on + strand at 54.815 kb on + strand at 54.815 kb on + strand at 54.815 kb on + strand at 54.815 kb on + strand at 54.815 kb on + strand at 54.815 kb on + strand at 54.815 kb on + strand at 54.816 kb on - strand at 54.816 kb on - strand at 54.816 kb on - strand at 54.816 kb on - strand at 54.816 kb on - strand at 54.816 kb on - strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.829 kb on - strand at 54.880 kb on + strand at 54.884 kb on - strand at 54.893 kb on - strand at 54.952 kb on + strand, within IAI47_19145 at 54.953 kb on - strand, within IAI47_19145 at 54.953 kb on - strand, within IAI47_19145 at 55.006 kb on + strand, within IAI47_19145 at 55.006 kb on + strand, within IAI47_19145 at 55.091 kb on - strand, within IAI47_19145 at 55.091 kb on - strand, within IAI47_19145 at 55.098 kb on + strand, within IAI47_19145 at 55.099 kb on - strand, within IAI47_19145 at 55.147 kb on + strand, within IAI47_19145 at 55.147 kb on + strand, within IAI47_19145 at 55.147 kb on + strand, within IAI47_19145 at 55.160 kb on + strand, within IAI47_19145 at 55.160 kb on + strand, within IAI47_19145 at 55.160 kb on + strand, within IAI47_19145 at 55.161 kb on - strand, within IAI47_19145 at 55.161 kb on - strand, within IAI47_19145 at 55.161 kb on - strand, within IAI47_19145 at 55.164 kb on - strand, within IAI47_19145 at 55.249 kb on - strand, within IAI47_19145 at 55.261 kb on + strand, within IAI47_19145 at 55.262 kb on - strand, within IAI47_19145 at 55.299 kb on - strand, within IAI47_19145 at 55.375 kb on + strand, within IAI47_19145 at 55.375 kb on + strand, within IAI47_19145 at 55.375 kb on + strand, within IAI47_19145 at 55.376 kb on - strand, within IAI47_19145 at 55.376 kb on - strand, within IAI47_19145 at 55.376 kb on - strand, within IAI47_19145 at 55.378 kb on + strand, within IAI47_19145 at 55.378 kb on + strand, within IAI47_19145 at 55.378 kb on + strand, within IAI47_19145 at 55.379 kb on - strand, within IAI47_19145 at 55.605 kb on + strand at 55.605 kb on + strand at 55.605 kb on + strand at 55.609 kb on + strand at 55.610 kb on - strand at 55.615 kb on + strand at 55.615 kb on + strand at 55.615 kb on + strand at 55.615 kb on + strand at 55.616 kb on - strand at 55.619 kb on - strand at 55.626 kb on + strand at 55.627 kb on - strand at 55.627 kb on - strand at 55.627 kb on - strand at 55.656 kb on - strand at 55.659 kb on + strand at 55.659 kb on + strand at 55.659 kb on + strand at 55.660 kb on - strand at 55.667 kb on + strand at 55.668 kb on - strand at 55.668 kb on - strand at 55.698 kb on + strand at 55.698 kb on + strand at 55.699 kb on - strand at 55.699 kb on - strand at 55.710 kb on + strand at 55.711 kb on - strand at 55.711 kb on - strand at 55.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 53,464 + IAI47_19135 0.30 -0.6 53,464 + IAI47_19135 0.30 -0.5 53,464 + IAI47_19135 0.30 +0.4 53,465 - IAI47_19135 0.30 +1.0 53,465 - IAI47_19135 0.30 +1.9 53,465 - IAI47_19135 0.30 +1.3 53,495 + IAI47_19135 0.33 -1.3 53,495 + IAI47_19135 0.33 +1.4 53,495 + IAI47_19135 0.33 +0.6 53,495 + IAI47_19135 0.33 +0.8 53,495 + IAI47_19135 0.33 +1.2 53,495 + IAI47_19135 0.33 +0.8 53,495 + IAI47_19135 0.33 +0.4 53,495 + IAI47_19135 0.33 +0.7 53,495 + IAI47_19135 0.33 +0.2 53,495 + IAI47_19135 0.33 -0.3 53,496 - IAI47_19135 0.33 -0.6 53,496 - IAI47_19135 0.33 -0.2 53,496 - IAI47_19135 0.33 +1.3 53,496 - IAI47_19135 0.33 +1.8 53,496 - IAI47_19135 0.33 -0.0 53,496 - IAI47_19135 0.33 +2.4 53,633 + IAI47_19135 0.48 -0.3 53,634 - IAI47_19135 0.48 -1.4 53,721 - IAI47_19135 0.57 +0.7 53,745 + IAI47_19135 0.60 +2.0 53,745 + IAI47_19135 0.60 +0.8 53,745 + IAI47_19135 0.60 -0.1 53,745 + IAI47_19135 0.60 +1.0 53,745 + IAI47_19135 0.60 -1.2 53,746 - IAI47_19135 0.60 +0.1 53,804 + IAI47_19135 0.66 -1.5 53,819 + IAI47_19135 0.68 +3.0 53,819 + IAI47_19135 0.68 +1.4 53,819 + IAI47_19135 0.68 +0.3 53,820 - IAI47_19135 0.68 +0.6 53,883 - IAI47_19135 0.74 +1.3 53,883 - IAI47_19135 0.74 -0.6 53,915 - IAI47_19135 0.78 +0.7 53,924 - IAI47_19135 0.79 -1.1 53,937 - IAI47_19135 0.80 +2.7 53,961 + IAI47_19135 0.83 +0.1 53,974 + IAI47_19135 0.84 -0.0 53,974 + IAI47_19135 0.84 -0.2 53,974 + IAI47_19135 0.84 -1.5 53,974 + IAI47_19135 0.84 +0.0 53,974 + IAI47_19135 0.84 -0.8 54,012 + IAI47_19135 0.88 +0.2 54,012 + IAI47_19135 0.88 +1.0 54,013 - IAI47_19135 0.88 -0.5 54,086 + +0.5 54,086 + -0.8 54,087 - +3.6 54,087 - -0.6 54,087 - -0.7 54,087 - -0.0 54,087 - -1.6 54,087 - -0.1 54,087 - -0.1 54,087 - +0.5 54,087 - +4.0 54,087 - +0.4 54,087 - -0.0 54,087 - +0.4 54,087 - +0.4 54,147 + +0.7 54,152 - -2.0 54,215 + +0.4 54,215 + -0.5 54,215 + -1.1 54,216 - +0.3 54,216 - -1.6 54,216 - -0.6 54,217 + +0.4 54,217 + +0.5 54,218 - -1.5 54,218 - -0.1 54,227 + +0.7 54,273 - -0.6 54,273 - +1.8 54,273 - +1.9 54,299 + +1.7 54,299 + -0.2 54,299 + -0.0 54,299 + +0.4 54,299 + -0.3 54,299 + +0.5 54,300 - +1.0 54,300 - +2.0 54,300 - +0.2 54,300 - +1.1 54,300 - +1.2 54,300 - -0.0 54,300 - +0.2 54,300 - -1.2 54,300 - -2.1 54,300 - +0.8 54,300 - -0.1 54,300 - +0.9 54,300 - +1.2 54,301 + -0.3 54,301 + +1.1 54,301 + -0.8 54,302 - +0.7 54,302 - -0.3 54,302 - +0.8 54,302 - -1.3 54,302 - +0.3 54,302 - -0.8 54,302 - +0.7 54,302 - -0.0 54,305 + +1.4 54,305 + -0.8 54,305 + -1.2 54,305 + +0.2 54,305 + -1.1 54,305 + -1.3 54,306 - -1.2 54,306 - +2.2 54,306 - +0.9 54,306 - -1.4 54,306 - +0.1 54,383 + -1.5 54,385 + +0.6 54,385 + -1.1 54,385 + +0.4 54,385 + +2.4 54,386 - +0.9 54,386 - -0.4 54,386 - +0.7 54,386 - -0.7 54,386 - +1.5 54,388 + +2.2 54,389 - -0.8 54,411 + -1.3 54,411 + -0.5 54,411 + -1.4 54,411 + +1.0 54,432 + +0.1 54,433 - +0.4 54,433 - -0.2 54,433 - +0.2 54,466 + IAI47_19140 0.11 -0.5 54,494 + IAI47_19140 0.19 -0.3 54,494 + IAI47_19140 0.19 +0.5 54,494 + IAI47_19140 0.19 -0.2 54,495 - IAI47_19140 0.20 +1.5 54,534 + IAI47_19140 0.31 -0.8 54,534 + IAI47_19140 0.31 -0.3 54,535 - IAI47_19140 0.32 +0.8 54,535 - IAI47_19140 0.32 +0.9 54,535 - IAI47_19140 0.32 +0.2 54,535 - IAI47_19140 0.32 +1.1 54,535 - IAI47_19140 0.32 +2.3 54,573 - IAI47_19140 0.43 -1.5 54,573 - IAI47_19140 0.43 +1.4 54,593 + IAI47_19140 0.50 -0.3 54,631 + IAI47_19140 0.61 +0.1 54,632 - IAI47_19140 0.61 +1.6 54,632 - IAI47_19140 0.61 +0.8 54,632 - IAI47_19140 0.61 +0.2 54,632 - IAI47_19140 0.61 +0.5 54,632 - IAI47_19140 0.61 +1.0 54,632 - IAI47_19140 0.61 +1.6 54,632 - IAI47_19140 0.61 +0.4 54,689 + IAI47_19140 0.79 -0.7 54,689 + IAI47_19140 0.79 -0.0 54,689 + IAI47_19140 0.79 +0.2 54,690 - IAI47_19140 0.79 +1.9 54,694 + IAI47_19140 0.80 -0.6 54,694 + IAI47_19140 0.80 +0.4 54,695 - IAI47_19140 0.81 +1.9 54,695 - IAI47_19140 0.81 +3.3 54,695 - IAI47_19140 0.81 +1.8 54,718 + IAI47_19140 0.88 -0.6 54,718 + IAI47_19140 0.88 +0.1 54,718 + IAI47_19140 0.88 -0.6 54,718 + IAI47_19140 0.88 -2.3 54,719 - IAI47_19140 0.88 +1.9 54,719 - IAI47_19140 0.88 +1.7 54,719 - IAI47_19140 0.88 -0.2 54,719 - IAI47_19140 0.88 +1.5 54,721 - IAI47_19140 0.89 +0.2 54,757 + +1.0 54,757 + +1.9 54,771 + +0.8 54,772 - +1.1 54,799 + +0.1 54,815 + +0.9 54,815 + +0.9 54,815 + +0.3 54,815 + +0.7 54,815 + +1.0 54,815 + +0.2 54,815 + -0.3 54,815 + -0.2 54,816 - +0.4 54,816 - -0.2 54,816 - +1.0 54,816 - +0.8 54,816 - +0.2 54,816 - +3.0 54,818 + -0.6 54,818 + -0.1 54,819 - +1.3 54,819 - +1.0 54,829 - +0.1 54,880 + -1.4 54,884 - -0.8 54,893 - -0.0 54,952 + IAI47_19145 0.13 +0.4 54,953 - IAI47_19145 0.14 -0.2 54,953 - IAI47_19145 0.14 +0.1 55,006 + IAI47_19145 0.21 +0.3 55,006 + IAI47_19145 0.21 +1.0 55,091 - IAI47_19145 0.32 -1.3 55,091 - IAI47_19145 0.32 -1.3 55,098 + IAI47_19145 0.33 +0.9 55,099 - IAI47_19145 0.33 +0.4 55,147 + IAI47_19145 0.39 +2.2 55,147 + IAI47_19145 0.39 +0.6 55,147 + IAI47_19145 0.39 -0.8 55,160 + IAI47_19145 0.41 -0.5 55,160 + IAI47_19145 0.41 -0.7 55,160 + IAI47_19145 0.41 -0.4 55,161 - IAI47_19145 0.41 +1.4 55,161 - IAI47_19145 0.41 -1.0 55,161 - IAI47_19145 0.41 -0.4 55,164 - IAI47_19145 0.42 +0.2 55,249 - IAI47_19145 0.53 -1.6 55,261 + IAI47_19145 0.55 +0.1 55,262 - IAI47_19145 0.55 -0.2 55,299 - IAI47_19145 0.60 +0.5 55,375 + IAI47_19145 0.70 +1.0 55,375 + IAI47_19145 0.70 +1.9 55,375 + IAI47_19145 0.70 +1.2 55,376 - IAI47_19145 0.70 -0.4 55,376 - IAI47_19145 0.70 -0.0 55,376 - IAI47_19145 0.70 +1.3 55,378 + IAI47_19145 0.70 +1.2 55,378 + IAI47_19145 0.70 -0.4 55,378 + IAI47_19145 0.70 -0.5 55,379 - IAI47_19145 0.70 +2.4 55,605 + -0.0 55,605 + +1.1 55,605 + -0.4 55,609 + +0.4 55,610 - -0.5 55,615 + +1.3 55,615 + +1.3 55,615 + +0.4 55,615 + -1.8 55,616 - +2.0 55,619 - +0.8 55,626 + -0.6 55,627 - +0.7 55,627 - +0.4 55,627 - -1.1 55,656 - +1.3 55,659 + +0.6 55,659 + +0.8 55,659 + +0.6 55,660 - +0.3 55,667 + +0.3 55,668 - +2.6 55,668 - +0.8 55,698 + +1.6 55,698 + -0.3 55,699 - -0.0 55,699 - +0.1 55,710 + -0.1 55,711 - +0.1 55,711 - -0.2 55,733 + +1.5
Or see this region's nucleotide sequence