Strain Fitness in Pantoea sp. MT58 around IAI47_04415

Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04410 and IAI47_04415 are separated by 235 nucleotidesIAI47_04415 and IAI47_04420 are separated by 280 nucleotides IAI47_04410: IAI47_04410 - bifunctional chorismate mutase/prephenate dehydratase, at 924,076 to 925,251 _04410 IAI47_04415: IAI47_04415 - ribosome-associated translation inhibitor RaiA, at 925,487 to 925,822 _04415 IAI47_04420: IAI47_04420 - outer membrane protein assembly factor BamD, at 926,103 to 926,834 _04420 Position (kb) 925 926Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 924.496 kb on + strand, within IAI47_04410at 924.496 kb on + strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.553 kb on - strand, within IAI47_04410at 924.553 kb on - strand, within IAI47_04410at 924.561 kb on + strand, within IAI47_04410at 924.562 kb on - strand, within IAI47_04410at 924.562 kb on - strand, within IAI47_04410at 924.563 kb on + strand, within IAI47_04410at 924.563 kb on + strand, within IAI47_04410at 924.564 kb on - strand, within IAI47_04410at 924.564 kb on - strand, within IAI47_04410at 924.591 kb on + strand, within IAI47_04410at 924.592 kb on - strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.691 kb on - strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.744 kb on - strand, within IAI47_04410at 924.744 kb on - strand, within IAI47_04410at 924.794 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410at 925.062 kb on + strand, within IAI47_04410at 925.069 kb on + strand, within IAI47_04410at 925.069 kb on + strand, within IAI47_04410at 925.069 kb on + strand, within IAI47_04410at 925.070 kb on - strand, within IAI47_04410at 925.070 kb on - strand, within IAI47_04410at 925.215 kb on + strandat 925.216 kb on - strandat 925.216 kb on - strandat 925.251 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.269 kb on + strandat 925.269 kb on + strandat 925.269 kb on + strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.339 kb on + strandat 925.339 kb on + strandat 925.361 kb on + strandat 925.362 kb on - strandat 925.400 kb on + strandat 925.400 kb on + strandat 925.400 kb on + strandat 925.400 kb on + strandat 925.429 kb on + strandat 925.429 kb on + strandat 925.430 kb on - strandat 925.435 kb on + strandat 925.435 kb on + strandat 925.435 kb on + strandat 925.435 kb on + strandat 925.442 kb on + strandat 925.442 kb on + strandat 925.443 kb on - strandat 925.455 kb on + strandat 925.456 kb on - strandat 925.456 kb on - strandat 925.511 kb on - strandat 925.552 kb on + strand, within IAI47_04415at 925.552 kb on + strand, within IAI47_04415at 925.552 kb on + strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.609 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.616 kb on - strand, within IAI47_04415at 925.616 kb on - strandat 925.616 kb on - strand, within IAI47_04415at 925.616 kb on - strand, within IAI47_04415at 925.616 kb on - strand, within IAI47_04415at 925.660 kb on + strand, within IAI47_04415at 925.661 kb on - strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.664 kb on - strand, within IAI47_04415at 925.708 kb on + strand, within IAI47_04415at 925.709 kb on - strand, within IAI47_04415at 925.717 kb on + strand, within IAI47_04415at 925.802 kb on - strandat 925.808 kb on - strandat 925.823 kb on + strandat 925.823 kb on + strandat 925.824 kb on - strandat 925.824 kb on - strandat 925.824 kb on - strandat 925.829 kb on + strandat 925.865 kb on + strandat 925.866 kb on - strandat 925.882 kb on - strandat 925.926 kb on + strandat 925.926 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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924,496 + IAI47_04410 0.36 +0.3
924,496 + IAI47_04410 0.36 -0.2
924,497 - IAI47_04410 0.36 +1.1
924,497 - IAI47_04410 0.36 +1.1
924,497 - IAI47_04410 0.36 +0.6
924,497 - IAI47_04410 0.36 +1.0
924,497 - IAI47_04410 0.36 -0.8
924,497 - IAI47_04410 0.36 -1.4
924,497 - IAI47_04410 0.36 -1.2
924,497 - IAI47_04410 0.36 -0.3
924,510 + IAI47_04410 0.37 -0.6
924,510 + IAI47_04410 0.37 +2.3
924,510 + IAI47_04410 0.37 -1.6
924,510 + IAI47_04410 0.37 -1.1
924,510 + IAI47_04410 0.37 -1.2
924,510 + IAI47_04410 0.37 -1.7
924,510 + IAI47_04410 0.37 -0.5
924,510 + IAI47_04410 0.37 -1.2
924,510 + IAI47_04410 0.37 +0.2
924,510 + IAI47_04410 0.37 -0.8
924,511 - IAI47_04410 0.37 +1.4
924,511 - IAI47_04410 0.37 +0.9
924,511 - IAI47_04410 0.37 +1.7
924,511 - IAI47_04410 0.37 -0.1
924,511 - IAI47_04410 0.37 +0.4
924,511 - IAI47_04410 0.37 -0.2
924,511 - IAI47_04410 0.37 -1.7
924,552 + IAI47_04410 0.40 -1.0
924,552 + IAI47_04410 0.40 +0.8
924,552 + IAI47_04410 0.40 +1.1
924,553 - IAI47_04410 0.41 +1.0
924,553 - IAI47_04410 0.41 -0.3
924,561 + IAI47_04410 0.41 -1.1
924,562 - IAI47_04410 0.41 -0.6
924,562 - IAI47_04410 0.41 -0.1
924,563 + IAI47_04410 0.41 -0.8
924,563 + IAI47_04410 0.41 -1.2
924,564 - IAI47_04410 0.41 +1.5
924,564 - IAI47_04410 0.41 -0.5
924,591 + IAI47_04410 0.44 +0.4
924,592 - IAI47_04410 0.44 -0.2
924,594 + IAI47_04410 0.44 +0.4
924,594 + IAI47_04410 0.44 +0.0
924,594 + IAI47_04410 0.44 -1.8
924,594 + IAI47_04410 0.44 +1.1
924,595 - IAI47_04410 0.44 -0.4
924,595 - IAI47_04410 0.44 +1.3
924,595 - IAI47_04410 0.44 +1.0
924,632 + IAI47_04410 0.47 +0.4
924,632 + IAI47_04410 0.47 +0.2
924,632 + IAI47_04410 0.47 -0.0
924,632 + IAI47_04410 0.47 -1.0
924,632 + IAI47_04410 0.47 +0.2
924,633 - IAI47_04410 0.47 -0.5
924,633 - IAI47_04410 0.47 -0.5
924,633 - IAI47_04410 0.47 +0.7
924,633 - IAI47_04410 0.47 -0.7
924,633 - IAI47_04410 0.47 -0.4
924,690 + IAI47_04410 0.52 +0.7
924,690 + IAI47_04410 0.52 -0.6
924,690 + IAI47_04410 0.52 -1.5
924,690 + IAI47_04410 0.52 +0.3
924,690 + IAI47_04410 0.52 -2.3
924,690 + IAI47_04410 0.52 -0.3
924,691 - IAI47_04410 0.52 -0.8
924,694 + IAI47_04410 0.53 +1.1
924,694 + IAI47_04410 0.53 -1.1
924,694 + IAI47_04410 0.53 -0.6
924,694 + IAI47_04410 0.53 +0.5
924,694 + IAI47_04410 0.53 -0.3
924,694 + IAI47_04410 0.53 -0.8
924,694 + IAI47_04410 0.53 -1.6
924,694 + IAI47_04410 0.53 -0.3
924,694 + IAI47_04410 0.53 -0.9
924,694 + IAI47_04410 0.53 -1.5
924,694 + IAI47_04410 0.53 -1.9
924,695 - IAI47_04410 0.53 +1.0
924,695 - IAI47_04410 0.53 -0.7
924,695 - IAI47_04410 0.53 +0.1
924,695 - IAI47_04410 0.53 -0.6
924,695 - IAI47_04410 0.53 +0.3
924,695 - IAI47_04410 0.53 +0.1
924,695 - IAI47_04410 0.53 -0.9
924,695 - IAI47_04410 0.53 -0.4
924,695 - IAI47_04410 0.53 +0.5
924,695 - IAI47_04410 0.53 -0.1
924,695 - IAI47_04410 0.53 +0.1
924,695 - IAI47_04410 0.53 +1.0
924,714 + IAI47_04410 0.54 +0.8
924,714 + IAI47_04410 0.54 -0.9
924,714 + IAI47_04410 0.54 -1.2
924,714 + IAI47_04410 0.54 -0.1
924,715 - IAI47_04410 0.54 +0.7
924,715 - IAI47_04410 0.54 +1.1
924,715 - IAI47_04410 0.54 +0.1
924,715 - IAI47_04410 0.54 +2.5
924,715 - IAI47_04410 0.54 -0.3
924,743 + IAI47_04410 0.57 +0.1
924,743 + IAI47_04410 0.57 -0.2
924,743 + IAI47_04410 0.57 -0.3
924,744 - IAI47_04410 0.57 -0.9
924,744 - IAI47_04410 0.57 +0.1
924,794 + IAI47_04410 0.61 +0.1
924,884 + IAI47_04410 0.69 +0.4
924,884 + IAI47_04410 0.69 -0.2
924,884 + IAI47_04410 0.69 +2.5
924,884 + IAI47_04410 0.69 +0.4
924,884 + IAI47_04410 0.69 -0.4
924,885 - IAI47_04410 0.69 -1.5
924,885 - IAI47_04410 0.69 -0.6
924,885 - IAI47_04410 0.69 +0.5
925,037 + IAI47_04410 0.82 -1.0
925,037 + IAI47_04410 0.82 +0.4
925,037 + IAI47_04410 0.82 -0.3
925,037 + IAI47_04410 0.82 -0.8
925,037 + IAI47_04410 0.82 +2.0
925,037 + IAI47_04410 0.82 +0.8
925,037 + IAI47_04410 0.82 -1.7
925,037 + IAI47_04410 0.82 -1.1
925,038 - IAI47_04410 0.82 -0.3
925,038 - IAI47_04410 0.82 -0.0
925,038 - IAI47_04410 0.82 -1.5
925,062 + IAI47_04410 0.84 +0.2
925,069 + IAI47_04410 0.84 -0.5
925,069 + IAI47_04410 0.84 +1.1
925,069 + IAI47_04410 0.84 -0.7
925,070 - IAI47_04410 0.85 -3.2
925,070 - IAI47_04410 0.85 -1.3
925,215 + -0.5
925,216 - -2.6
925,216 - +0.0
925,251 + +0.1
925,264 + -2.9
925,264 + +2.5
925,264 + -0.9
925,264 + +2.2
925,264 + +0.0
925,264 + +0.2
925,264 + +1.7
925,264 + -0.1
925,264 + -0.9
925,265 - -0.5
925,265 - +0.8
925,265 - +1.2
925,265 - -0.3
925,265 - -1.4
925,265 - -0.6
925,265 - +0.4
925,265 - -0.8
925,265 - -0.4
925,265 - -1.4
925,265 - +0.7
925,269 + -0.3
925,269 + -0.8
925,269 + -0.4
925,270 - -0.7
925,270 - -0.9
925,270 - +1.9
925,270 - -0.7
925,270 - -0.1
925,270 - -0.7
925,339 + -0.9
925,339 + -2.1
925,361 + -1.4
925,362 - +1.6
925,400 + -1.1
925,400 + -2.8
925,400 + -1.7
925,400 + -0.1
925,429 + -0.9
925,429 + -0.3
925,430 - -0.5
925,435 + +0.5
925,435 + -1.6
925,435 + -1.7
925,435 + -0.6
925,442 + +0.5
925,442 + -1.7
925,443 - +1.1
925,455 + -0.2
925,456 - -0.9
925,456 - -1.1
925,511 - +1.7
925,552 + IAI47_04415 0.19 +0.1
925,552 + IAI47_04415 0.19 +0.3
925,552 + IAI47_04415 0.19 +1.1
925,553 - IAI47_04415 0.20 +0.9
925,553 - IAI47_04415 0.20 +0.7
925,553 - IAI47_04415 0.20 +1.2
925,553 - IAI47_04415 0.20 -1.2
925,553 - IAI47_04415 0.20 +1.3
925,609 + IAI47_04415 0.36 -2.0
925,611 + IAI47_04415 0.37 +2.0
925,611 + IAI47_04415 0.37 +0.3
925,611 + IAI47_04415 0.37 -1.0
925,611 + IAI47_04415 0.37 -0.6
925,611 + IAI47_04415 0.37 -0.4
925,611 + IAI47_04415 0.37 +0.4
925,611 + IAI47_04415 0.37 +0.1
925,611 + IAI47_04415 0.37 -0.7
925,612 - IAI47_04415 0.37 +2.9
925,612 - IAI47_04415 0.37 -0.4
925,612 - IAI47_04415 0.37 +0.4
925,612 - IAI47_04415 0.37 +0.6
925,612 - IAI47_04415 0.37 +1.2
925,615 + IAI47_04415 0.38 +0.2
925,615 + IAI47_04415 0.38 +2.6
925,615 + IAI47_04415 0.38 +0.4
925,615 + IAI47_04415 0.38 -0.1
925,615 + IAI47_04415 0.38 +1.2
925,616 - IAI47_04415 0.38 +1.4
925,616 - +3.1
925,616 - IAI47_04415 0.38 +0.3
925,616 - IAI47_04415 0.38 +0.2
925,616 - IAI47_04415 0.38 +0.7
925,660 + IAI47_04415 0.51 +0.2
925,661 - IAI47_04415 0.52 +1.3
925,663 + IAI47_04415 0.52 -1.3
925,663 + IAI47_04415 0.52 -1.4
925,663 + IAI47_04415 0.52 +0.9
925,663 + IAI47_04415 0.52 +0.1
925,663 + IAI47_04415 0.52 +0.5
925,664 - IAI47_04415 0.53 +1.0
925,708 + IAI47_04415 0.66 +1.2
925,709 - IAI47_04415 0.66 -0.5
925,717 + IAI47_04415 0.68 -0.6
925,802 - -0.8
925,808 - +1.5
925,823 + -0.5
925,823 + +0.1
925,824 - +0.9
925,824 - -1.9
925,824 - -1.6
925,829 + -1.4
925,865 + +0.3
925,866 - -1.4
925,882 - -0.2
925,926 + +0.1
925,926 + -1.2

Or see this region's nucleotide sequence