Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03425 and IAI47_03430 are separated by 223 nucleotides IAI47_03430 and IAI47_03435 are separated by 632 nucleotides IAI47_03435 and IAI47_03440 are separated by 746 nucleotides
IAI47_03425: IAI47_03425 - PAS domain-containing methyl-accepting chemotaxis protein, at 715,248 to 716,567
_03425
IAI47_03430: IAI47_03430 - tRNA-Phe, at 716,791 to 716,866
_03430
IAI47_03435: IAI47_03435 - sensor domain-containing diguanylate cyclase, at 717,499 to 718,464
_03435
IAI47_03440: IAI47_03440 - general stress protein, at 719,211 to 719,375
_03440
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 716.528 kb on + strand at 716.528 kb on + strand at 716.529 kb on - strand at 716.529 kb on - strand at 716.529 kb on - strand at 716.552 kb on + strand at 716.552 kb on + strand at 716.552 kb on + strand at 716.552 kb on + strand at 716.553 kb on - strand at 716.553 kb on - strand at 716.553 kb on - strand at 716.553 kb on - strand at 716.553 kb on - strand at 716.553 kb on - strand at 716.567 kb on + strand at 716.568 kb on - strand at 716.568 kb on - strand at 716.568 kb on - strand at 716.568 kb on - strand at 716.577 kb on + strand at 716.577 kb on + strand at 716.578 kb on - strand at 716.578 kb on - strand at 716.580 kb on + strand at 716.580 kb on + strand at 716.580 kb on + strand at 716.580 kb on + strand at 716.581 kb on - strand at 716.581 kb on - strand at 716.581 kb on - strand at 716.581 kb on - strand at 716.581 kb on - strand at 716.581 kb on - strand at 716.583 kb on + strand at 716.583 kb on + strand at 716.583 kb on + strand at 716.583 kb on + strand at 716.583 kb on + strand at 716.584 kb on - strand at 716.584 kb on - strand at 716.584 kb on - strand at 716.584 kb on - strand at 716.584 kb on - strand at 716.584 kb on - strand at 716.584 kb on - strand at 716.584 kb on - strand at 716.584 kb on - strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.602 kb on + strand at 716.603 kb on - strand at 716.603 kb on - strand at 716.603 kb on - strand at 716.603 kb on - strand at 716.603 kb on - strand at 716.603 kb on - strand at 716.603 kb on - strand at 716.605 kb on - strand at 716.605 kb on - strand at 716.634 kb on + strand at 716.634 kb on + strand at 716.635 kb on - strand at 716.635 kb on - strand at 716.635 kb on - strand at 716.635 kb on - strand at 716.635 kb on - strand at 716.658 kb on + strand at 716.778 kb on - strand at 716.906 kb on + strand at 717.192 kb on - strand at 717.192 kb on - strand at 717.225 kb on + strand at 717.225 kb on + strand at 717.226 kb on - strand at 717.226 kb on - strand at 717.226 kb on - strand at 717.226 kb on - strand at 717.231 kb on + strand at 717.253 kb on + strand at 717.254 kb on - strand at 717.254 kb on - strand at 717.254 kb on - strand at 717.254 kb on - strand at 717.254 kb on - strand at 717.283 kb on + strand at 717.304 kb on - strand at 717.317 kb on + strand at 717.317 kb on + strand at 717.317 kb on + strand at 717.317 kb on + strand at 717.317 kb on + strand at 717.317 kb on + strand at 717.317 kb on + strand at 717.318 kb on - strand at 717.318 kb on - strand at 717.318 kb on - strand at 717.318 kb on - strand at 717.318 kb on - strand at 717.318 kb on - strand at 717.318 kb on - strand at 717.323 kb on + strand at 717.323 kb on + strand at 717.323 kb on + strand at 717.323 kb on + strand at 717.324 kb on - strand at 717.422 kb on - strand at 717.422 kb on - strand at 717.432 kb on + strand at 717.432 kb on + strand at 717.433 kb on - strand at 717.433 kb on - strand at 717.434 kb on + strand at 717.435 kb on - strand at 717.435 kb on - strand at 717.446 kb on + strand at 717.447 kb on - strand at 717.472 kb on - strand at 717.472 kb on - strand at 717.472 kb on - strand at 717.527 kb on + strand at 717.527 kb on + strand at 717.527 kb on + strand at 717.527 kb on + strand at 717.528 kb on - strand at 717.528 kb on - strand at 717.528 kb on - strand at 717.528 kb on - strand at 717.546 kb on + strand at 717.546 kb on + strand at 717.547 kb on - strand at 717.564 kb on + strand at 717.564 kb on + strand at 717.564 kb on + strand at 717.564 kb on + strand at 717.565 kb on - strand at 717.565 kb on - strand at 717.565 kb on - strand at 717.565 kb on - strand at 717.565 kb on - strand at 717.566 kb on + strand at 717.567 kb on - strand at 717.582 kb on + strand at 717.637 kb on - strand, within IAI47_03435 at 717.637 kb on - strand, within IAI47_03435 at 717.805 kb on + strand, within IAI47_03435 at 717.806 kb on - strand, within IAI47_03435 at 717.806 kb on - strand, within IAI47_03435 at 717.808 kb on + strand, within IAI47_03435 at 717.808 kb on + strand, within IAI47_03435 at 717.808 kb on + strand, within IAI47_03435 at 717.808 kb on + strand, within IAI47_03435 at 717.808 kb on + strand, within IAI47_03435 at 717.808 kb on + strand, within IAI47_03435 at 717.809 kb on - strand, within IAI47_03435 at 717.809 kb on - strand, within IAI47_03435 at 717.846 kb on + strand, within IAI47_03435 at 717.846 kb on + strand, within IAI47_03435 at 717.846 kb on + strand, within IAI47_03435 at 717.846 kb on + strand, within IAI47_03435 at 717.846 kb on + strand, within IAI47_03435 at 717.847 kb on - strand, within IAI47_03435 at 717.849 kb on + strand, within IAI47_03435 at 717.849 kb on + strand, within IAI47_03435 at 717.849 kb on + strand, within IAI47_03435 at 717.849 kb on + strand, within IAI47_03435 at 717.849 kb on + strand, within IAI47_03435 at 717.849 kb on + strand, within IAI47_03435 at 717.849 kb on + strand, within IAI47_03435 at 717.850 kb on - strand, within IAI47_03435 at 717.850 kb on - strand, within IAI47_03435 at 717.850 kb on - strand, within IAI47_03435 at 717.850 kb on - strand, within IAI47_03435 at 717.850 kb on - strand, within IAI47_03435 at 717.924 kb on + strand, within IAI47_03435 at 717.924 kb on + strand, within IAI47_03435 at 717.925 kb on - strand, within IAI47_03435 at 717.949 kb on + strand, within IAI47_03435 at 717.949 kb on + strand, within IAI47_03435 at 717.950 kb on - strand, within IAI47_03435 at 717.950 kb on - strand, within IAI47_03435 at 717.950 kb on - strand, within IAI47_03435 at 717.950 kb on - strand, within IAI47_03435 at 717.950 kb on - strand, within IAI47_03435 at 718.000 kb on - strand, within IAI47_03435 at 718.024 kb on + strand, within IAI47_03435 at 718.024 kb on + strand, within IAI47_03435 at 718.024 kb on + strand, within IAI47_03435 at 718.024 kb on + strand, within IAI47_03435 at 718.024 kb on + strand, within IAI47_03435 at 718.024 kb on + strand, within IAI47_03435 at 718.025 kb on - strand, within IAI47_03435 at 718.025 kb on - strand, within IAI47_03435 at 718.025 kb on - strand, within IAI47_03435 at 718.101 kb on + strand, within IAI47_03435 at 718.102 kb on - strand, within IAI47_03435 at 718.142 kb on + strand, within IAI47_03435 at 718.143 kb on - strand, within IAI47_03435 at 718.155 kb on + strand, within IAI47_03435 at 718.217 kb on + strand, within IAI47_03435 at 718.217 kb on + strand, within IAI47_03435 at 718.218 kb on - strand, within IAI47_03435 at 718.218 kb on - strand, within IAI47_03435 at 718.296 kb on + strand, within IAI47_03435 at 718.297 kb on - strand, within IAI47_03435 at 718.346 kb on + strand, within IAI47_03435 at 718.347 kb on - strand, within IAI47_03435 at 718.347 kb on - strand, within IAI47_03435 at 718.347 kb on - strand, within IAI47_03435 at 718.368 kb on + strand at 718.399 kb on + strand at 718.399 kb on + strand at 718.482 kb on + strand at 718.483 kb on - strand at 718.483 kb on - strand at 718.483 kb on - strand at 718.512 kb on + strand at 718.512 kb on + strand at 718.513 kb on - strand at 718.523 kb on - strand at 718.529 kb on + strand at 718.551 kb on + strand at 718.608 kb on - strand at 718.613 kb on + strand at 718.614 kb on - strand at 718.644 kb on + strand at 718.644 kb on + strand at 718.645 kb on - strand at 718.645 kb on - strand at 718.645 kb on - strand at 718.648 kb on + strand at 718.648 kb on + strand at 718.649 kb on - strand at 718.649 kb on - strand at 718.743 kb on + strand at 718.847 kb on + strand at 719.066 kb on - strand at 719.139 kb on + strand at 719.140 kb on - strand at 719.140 kb on - strand at 719.168 kb on + strand at 719.168 kb on + strand at 719.191 kb on - strand at 719.191 kb on - strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.211 kb on - strand at 719.211 kb on - strand at 719.211 kb on - strand at 719.303 kb on + strand, within IAI47_03440 at 719.310 kb on - strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.383 kb on + strand at 719.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 716,528 + -0.4 716,528 + +0.3 716,529 - -2.0 716,529 - +0.4 716,529 - +0.3 716,552 + +0.0 716,552 + +0.4 716,552 + +0.8 716,552 + -0.6 716,553 - +0.5 716,553 - -1.4 716,553 - -0.4 716,553 - +0.6 716,553 - +2.2 716,553 - +1.4 716,567 + -0.9 716,568 - -2.5 716,568 - -1.0 716,568 - -0.7 716,568 - -0.3 716,577 + -1.0 716,577 + -0.2 716,578 - -1.1 716,578 - +0.2 716,580 + -1.5 716,580 + +0.1 716,580 + -0.6 716,580 + -1.5 716,581 - +3.3 716,581 - -0.7 716,581 - -0.6 716,581 - -1.7 716,581 - -0.4 716,581 - -0.6 716,583 + -0.3 716,583 + +0.5 716,583 + -0.4 716,583 + +0.5 716,583 + +2.1 716,584 - +2.2 716,584 - +0.6 716,584 - -0.1 716,584 - +0.2 716,584 - +0.8 716,584 - +3.7 716,584 - -1.3 716,584 - -0.6 716,584 - -0.6 716,602 + -0.9 716,602 + -1.8 716,602 + +1.1 716,602 + -1.5 716,602 + -0.2 716,602 + +0.0 716,602 + -0.2 716,602 + -0.6 716,602 + +1.5 716,602 + -2.5 716,602 + -0.3 716,602 + -0.4 716,603 - -0.4 716,603 - +0.4 716,603 - +0.9 716,603 - +1.5 716,603 - -1.4 716,603 - -0.7 716,603 - -1.0 716,605 - +0.1 716,605 - -1.0 716,634 + -2.1 716,634 + +0.1 716,635 - +1.6 716,635 - -1.5 716,635 - +0.9 716,635 - +0.5 716,635 - -0.1 716,658 + +0.5 716,778 - -1.6 716,906 + +0.7 717,192 - +0.0 717,192 - -0.7 717,225 + -0.6 717,225 + -1.1 717,226 - -0.3 717,226 - +0.0 717,226 - -1.8 717,226 - -2.4 717,231 + -0.5 717,253 + -0.6 717,254 - +0.9 717,254 - +0.2 717,254 - +0.3 717,254 - +0.8 717,254 - -0.3 717,283 + +0.7 717,304 - -0.5 717,317 + +0.4 717,317 + -0.3 717,317 + -0.1 717,317 + -1.6 717,317 + -0.2 717,317 + -0.1 717,317 + +0.1 717,318 - -0.9 717,318 - -0.1 717,318 - -0.2 717,318 - +0.5 717,318 - +0.9 717,318 - +3.0 717,318 - +0.3 717,323 + +0.8 717,323 + -2.6 717,323 + +0.9 717,323 + -0.4 717,324 - -0.4 717,422 - +1.3 717,422 - -0.3 717,432 + -0.4 717,432 + -1.0 717,433 - -0.2 717,433 - -1.2 717,434 + -3.1 717,435 - -0.7 717,435 - +0.4 717,446 + +0.6 717,447 - -0.7 717,472 - -0.3 717,472 - -0.9 717,472 - -0.0 717,527 + +0.5 717,527 + -0.5 717,527 + +0.4 717,527 + -0.6 717,528 - +0.4 717,528 - -0.2 717,528 - -1.0 717,528 - -1.5 717,546 + -0.1 717,546 + -0.7 717,547 - +2.4 717,564 + -0.6 717,564 + -0.4 717,564 + -0.2 717,564 + -1.4 717,565 - +0.3 717,565 - +2.4 717,565 - +0.8 717,565 - +0.7 717,565 - -0.6 717,566 + +1.5 717,567 - -0.7 717,582 + -1.4 717,637 - IAI47_03435 0.14 +0.1 717,637 - IAI47_03435 0.14 +1.3 717,805 + IAI47_03435 0.32 -1.0 717,806 - IAI47_03435 0.32 -0.1 717,806 - IAI47_03435 0.32 +1.3 717,808 + IAI47_03435 0.32 +0.5 717,808 + IAI47_03435 0.32 +1.6 717,808 + IAI47_03435 0.32 -1.3 717,808 + IAI47_03435 0.32 +0.0 717,808 + IAI47_03435 0.32 -2.0 717,808 + IAI47_03435 0.32 -0.1 717,809 - IAI47_03435 0.32 -0.9 717,809 - IAI47_03435 0.32 -0.3 717,846 + IAI47_03435 0.36 +0.2 717,846 + IAI47_03435 0.36 +0.0 717,846 + IAI47_03435 0.36 +0.1 717,846 + IAI47_03435 0.36 -0.5 717,846 + IAI47_03435 0.36 -1.2 717,847 - IAI47_03435 0.36 -1.6 717,849 + IAI47_03435 0.36 -0.6 717,849 + IAI47_03435 0.36 -2.6 717,849 + IAI47_03435 0.36 +0.7 717,849 + IAI47_03435 0.36 -0.0 717,849 + IAI47_03435 0.36 -1.1 717,849 + IAI47_03435 0.36 -0.4 717,849 + IAI47_03435 0.36 -0.7 717,850 - IAI47_03435 0.36 -0.4 717,850 - IAI47_03435 0.36 +0.1 717,850 - IAI47_03435 0.36 -0.2 717,850 - IAI47_03435 0.36 -0.9 717,850 - IAI47_03435 0.36 +0.0 717,924 + IAI47_03435 0.44 -1.3 717,924 + IAI47_03435 0.44 -1.2 717,925 - IAI47_03435 0.44 +0.1 717,949 + IAI47_03435 0.47 +0.1 717,949 + IAI47_03435 0.47 -1.4 717,950 - IAI47_03435 0.47 +0.0 717,950 - IAI47_03435 0.47 +1.2 717,950 - IAI47_03435 0.47 +0.5 717,950 - IAI47_03435 0.47 +0.1 717,950 - IAI47_03435 0.47 +0.1 718,000 - IAI47_03435 0.52 -0.7 718,024 + IAI47_03435 0.54 -0.7 718,024 + IAI47_03435 0.54 +0.6 718,024 + IAI47_03435 0.54 -0.1 718,024 + IAI47_03435 0.54 -1.3 718,024 + IAI47_03435 0.54 -0.0 718,024 + IAI47_03435 0.54 -1.2 718,025 - IAI47_03435 0.54 -1.6 718,025 - IAI47_03435 0.54 -0.7 718,025 - IAI47_03435 0.54 +0.7 718,101 + IAI47_03435 0.62 -1.9 718,102 - IAI47_03435 0.62 +0.1 718,142 + IAI47_03435 0.67 -0.1 718,143 - IAI47_03435 0.67 -0.4 718,155 + IAI47_03435 0.68 -0.9 718,217 + IAI47_03435 0.74 -0.4 718,217 + IAI47_03435 0.74 -0.9 718,218 - IAI47_03435 0.74 +0.1 718,218 - IAI47_03435 0.74 -0.2 718,296 + IAI47_03435 0.83 +1.5 718,297 - IAI47_03435 0.83 -1.1 718,346 + IAI47_03435 0.88 -0.1 718,347 - IAI47_03435 0.88 -0.5 718,347 - IAI47_03435 0.88 -1.6 718,347 - IAI47_03435 0.88 -1.2 718,368 + -1.3 718,399 + -1.9 718,399 + -2.7 718,482 + -1.0 718,483 - -2.6 718,483 - +1.1 718,483 - +1.8 718,512 + -1.0 718,512 + -0.1 718,513 - -0.7 718,523 - -0.3 718,529 + -0.2 718,551 + -1.7 718,608 - +0.8 718,613 + -0.9 718,614 - -0.2 718,644 + +0.3 718,644 + -1.7 718,645 - +0.8 718,645 - -0.7 718,645 - +0.3 718,648 + +0.1 718,648 + -2.1 718,649 - -0.5 718,649 - +0.4 718,743 + -1.4 718,847 + +0.8 719,066 - -0.6 719,139 + +3.2 719,140 - -2.0 719,140 - -1.3 719,168 + -0.1 719,168 + +1.1 719,191 - +0.3 719,191 - -2.9 719,210 + +0.6 719,210 + +0.3 719,210 + -1.5 719,210 + -0.5 719,211 - -2.2 719,211 - -1.2 719,211 - -1.2 719,303 + IAI47_03440 0.56 -0.7 719,310 - IAI47_03440 0.60 -1.0 719,354 + IAI47_03440 0.87 -1.7 719,354 + IAI47_03440 0.87 -2.3 719,354 + IAI47_03440 0.87 -1.8 719,355 - IAI47_03440 0.87 +0.8 719,355 - IAI47_03440 0.87 +1.6 719,355 - IAI47_03440 0.87 +1.0 719,383 + -0.6 719,438 - +0.4
Or see this region's nucleotide sequence