Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00122

Experiment: PYE 0.5x 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00119 and CCNA_00120 overlap by 4 nucleotidesCCNA_00120 and CCNA_00121 overlap by 4 nucleotidesCCNA_00121 and CCNA_00122 are separated by 8 nucleotidesCCNA_00122 and CCNA_00123 are separated by 72 nucleotidesCCNA_00123 and CCNA_00124 are separated by 143 nucleotides CCNA_00119: CCNA_00119 - hypothetical protein, at 131,977 to 132,438 _00119 CCNA_00120: CCNA_00120 - putative acetyltransferase, at 132,435 to 132,953 _00120 CCNA_00121: CCNA_00121 - hypothetical protein, at 132,950 to 133,408 _00121 CCNA_00122: CCNA_00122 - hypothetical protein, at 133,417 to 133,827 _00122 CCNA_00123: CCNA_00123 - 3-hydroxyacyl CoA dehydrogenase, at 133,900 to 134,682 _00123 CCNA_00124: CCNA_00124 - hypothetical protein, at 134,826 to 135,413 _00124 Position (kb) 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 132.429 kb on + strandat 132.429 kb on + strandat 132.429 kb on + strandat 132.429 kb on + strandat 132.429 kb on + strandat 132.429 kb on + strandat 132.429 kb on + strandat 132.432 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.437 kb on - strandat 132.503 kb on + strand, within CCNA_00120at 132.503 kb on + strand, within CCNA_00120at 132.510 kb on - strand, within CCNA_00120at 132.511 kb on - strand, within CCNA_00120at 132.520 kb on + strand, within CCNA_00120at 132.525 kb on + strand, within CCNA_00120at 132.527 kb on + strand, within CCNA_00120at 132.528 kb on - strand, within CCNA_00120at 132.535 kb on - strand, within CCNA_00120at 132.546 kb on + strand, within CCNA_00120at 132.577 kb on + strand, within CCNA_00120at 132.577 kb on + strand, within CCNA_00120at 132.577 kb on + strand, within CCNA_00120at 132.594 kb on - strand, within CCNA_00120at 132.649 kb on - strand, within CCNA_00120at 132.661 kb on + strand, within CCNA_00120at 132.671 kb on + strand, within CCNA_00120at 132.674 kb on - strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.691 kb on + strand, within CCNA_00120at 132.697 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.699 kb on - strand, within CCNA_00120at 132.752 kb on - strand, within CCNA_00120at 132.759 kb on + strand, within CCNA_00120at 132.762 kb on - strand, within CCNA_00120at 132.762 kb on - strand, within CCNA_00120at 132.762 kb on - strand, within CCNA_00120at 132.762 kb on - strand, within CCNA_00120at 132.791 kb on + strand, within CCNA_00120at 132.799 kb on - strand, within CCNA_00120at 132.799 kb on - strand, within CCNA_00120at 132.799 kb on - strand, within CCNA_00120at 132.799 kb on - strand, within CCNA_00120at 132.852 kb on - strand, within CCNA_00120at 132.861 kb on + strand, within CCNA_00120at 132.869 kb on - strand, within CCNA_00120at 132.869 kb on - strand, within CCNA_00120at 132.871 kb on + strand, within CCNA_00120at 132.879 kb on - strand, within CCNA_00120at 132.879 kb on - strand, within CCNA_00120at 132.925 kb on + strandat 132.930 kb on + strandat 132.930 kb on + strandat 132.930 kb on + strandat 132.933 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.964 kb on + strandat 132.974 kb on + strandat 132.994 kb on + strandat 133.026 kb on + strand, within CCNA_00121at 133.026 kb on + strand, within CCNA_00121at 133.026 kb on + strand, within CCNA_00121at 133.029 kb on - strand, within CCNA_00121at 133.030 kb on + strand, within CCNA_00121at 133.034 kb on - strand, within CCNA_00121at 133.034 kb on - strand, within CCNA_00121at 133.034 kb on - strand, within CCNA_00121at 133.044 kb on - strand, within CCNA_00121at 133.045 kb on - strand, within CCNA_00121at 133.053 kb on - strand, within CCNA_00121at 133.073 kb on - strand, within CCNA_00121at 133.113 kb on + strand, within CCNA_00121at 133.151 kb on + strand, within CCNA_00121at 133.164 kb on - strand, within CCNA_00121at 133.169 kb on - strand, within CCNA_00121at 133.186 kb on + strand, within CCNA_00121at 133.215 kb on - strand, within CCNA_00121at 133.254 kb on - strand, within CCNA_00121at 133.259 kb on - strand, within CCNA_00121at 133.259 kb on - strand, within CCNA_00121at 133.261 kb on + strand, within CCNA_00121at 133.261 kb on + strand, within CCNA_00121at 133.261 kb on + strand, within CCNA_00121at 133.261 kb on - strand, within CCNA_00121at 133.261 kb on - strand, within CCNA_00121at 133.313 kb on + strand, within CCNA_00121at 133.313 kb on + strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.335 kb on + strand, within CCNA_00121at 133.335 kb on + strand, within CCNA_00121at 133.343 kb on - strand, within CCNA_00121at 133.343 kb on - strand, within CCNA_00121at 133.343 kb on - strand, within CCNA_00121at 133.343 kb on - strand, within CCNA_00121at 133.362 kb on + strand, within CCNA_00121at 133.362 kb on + strand, within CCNA_00121at 133.370 kb on + strandat 133.370 kb on - strandat 133.378 kb on - strandat 133.383 kb on - strandat 133.406 kb on - strandat 133.426 kb on + strandat 133.455 kb on - strandat 133.489 kb on - strand, within CCNA_00122at 133.593 kb on - strand, within CCNA_00122at 133.609 kb on - strand, within CCNA_00122at 133.641 kb on + strand, within CCNA_00122at 133.759 kb on - strand, within CCNA_00122at 133.808 kb on + strandat 133.830 kb on + strandat 133.830 kb on + strandat 133.830 kb on + strandat 133.838 kb on - strandat 133.960 kb on + strandat 133.961 kb on - strandat 133.997 kb on - strand, within CCNA_00123at 133.997 kb on - strand, within CCNA_00123at 133.999 kb on + strand, within CCNA_00123at 134.022 kb on - strand, within CCNA_00123at 134.027 kb on + strand, within CCNA_00123at 134.180 kb on - strand, within CCNA_00123at 134.204 kb on - strand, within CCNA_00123at 134.217 kb on + strand, within CCNA_00123at 134.245 kb on + strand, within CCNA_00123at 134.253 kb on - strand, within CCNA_00123at 134.253 kb on - strand, within CCNA_00123at 134.258 kb on - strand, within CCNA_00123at 134.290 kb on + strand, within CCNA_00123at 134.343 kb on + strand, within CCNA_00123at 134.401 kb on + strand, within CCNA_00123at 134.428 kb on + strand, within CCNA_00123at 134.469 kb on + strand, within CCNA_00123at 134.482 kb on - strand, within CCNA_00123at 134.501 kb on - strand, within CCNA_00123at 134.501 kb on - strand, within CCNA_00123at 134.529 kb on + strand, within CCNA_00123at 134.576 kb on - strand, within CCNA_00123at 134.588 kb on - strand, within CCNA_00123at 134.607 kb on + strandat 134.644 kb on - strandat 134.676 kb on + strandat 134.676 kb on + strandat 134.681 kb on + strandat 134.802 kb on + strandat 134.809 kb on + strandat 134.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep2 28 days
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132,429 + +0.6
132,429 + -1.7
132,429 + +0.5
132,429 + +0.9
132,429 + -0.8
132,429 + +1.6
132,429 + -0.9
132,432 - -0.4
132,437 - +0.9
132,437 - -0.6
132,437 - +0.3
132,437 - -2.7
132,437 - +0.9
132,437 - -0.1
132,437 - -1.9
132,437 - +0.9
132,437 - -1.8
132,437 - -1.5
132,503 + CCNA_00120 0.13 -0.4
132,503 + CCNA_00120 0.13 -1.2
132,510 - CCNA_00120 0.14 -1.5
132,511 - CCNA_00120 0.15 -0.4
132,520 + CCNA_00120 0.16 -1.7
132,525 + CCNA_00120 0.17 -0.7
132,527 + CCNA_00120 0.18 +0.2
132,528 - CCNA_00120 0.18 +1.9
132,535 - CCNA_00120 0.19 -1.1
132,546 + CCNA_00120 0.21 -0.7
132,577 + CCNA_00120 0.27 -0.3
132,577 + CCNA_00120 0.27 -0.2
132,577 + CCNA_00120 0.27 -1.0
132,594 - CCNA_00120 0.31 +0.5
132,649 - CCNA_00120 0.41 +2.5
132,661 + CCNA_00120 0.44 -2.3
132,671 + CCNA_00120 0.45 -1.6
132,674 - CCNA_00120 0.46 -1.5
132,691 + CCNA_00120 0.49 -0.1
132,691 + CCNA_00120 0.49 -0.3
132,691 + CCNA_00120 0.49 +0.3
132,691 + CCNA_00120 0.49 -0.7
132,691 + CCNA_00120 0.49 +0.3
132,691 + CCNA_00120 0.49 -0.8
132,691 + CCNA_00120 0.49 +0.3
132,691 + CCNA_00120 0.49 -0.1
132,691 + CCNA_00120 0.49 +0.6
132,697 - CCNA_00120 0.50 +0.3
132,699 - CCNA_00120 0.51 +0.1
132,699 - CCNA_00120 0.51 -1.0
132,699 - CCNA_00120 0.51 +0.6
132,699 - CCNA_00120 0.51 +0.8
132,699 - CCNA_00120 0.51 +1.9
132,699 - CCNA_00120 0.51 -1.8
132,699 - CCNA_00120 0.51 -1.8
132,699 - CCNA_00120 0.51 -1.1
132,699 - CCNA_00120 0.51 -0.7
132,699 - CCNA_00120 0.51 -1.2
132,699 - CCNA_00120 0.51 -2.5
132,752 - CCNA_00120 0.61 -0.6
132,759 + CCNA_00120 0.62 +0.3
132,762 - CCNA_00120 0.63 +0.9
132,762 - CCNA_00120 0.63 -0.4
132,762 - CCNA_00120 0.63 -1.1
132,762 - CCNA_00120 0.63 -1.4
132,791 + CCNA_00120 0.69 +0.6
132,799 - CCNA_00120 0.70 +0.7
132,799 - CCNA_00120 0.70 +0.7
132,799 - CCNA_00120 0.70 +0.5
132,799 - CCNA_00120 0.70 +1.6
132,852 - CCNA_00120 0.80 -0.9
132,861 + CCNA_00120 0.82 -0.6
132,869 - CCNA_00120 0.84 -0.7
132,869 - CCNA_00120 0.84 -0.6
132,871 + CCNA_00120 0.84 -1.1
132,879 - CCNA_00120 0.86 +0.8
132,879 - CCNA_00120 0.86 +0.3
132,925 + -0.5
132,930 + -1.5
132,930 + -2.4
132,930 + -0.9
132,933 - +0.8
132,938 - +1.2
132,938 - -0.8
132,964 + +1.6
132,974 + -0.3
132,994 + +2.5
133,026 + CCNA_00121 0.17 -0.2
133,026 + CCNA_00121 0.17 +1.3
133,026 + CCNA_00121 0.17 +0.4
133,029 - CCNA_00121 0.17 -0.1
133,030 + CCNA_00121 0.17 -2.4
133,034 - CCNA_00121 0.18 +0.7
133,034 - CCNA_00121 0.18 -0.5
133,034 - CCNA_00121 0.18 -0.4
133,044 - CCNA_00121 0.20 -0.3
133,045 - CCNA_00121 0.21 -0.5
133,053 - CCNA_00121 0.22 +0.6
133,073 - CCNA_00121 0.27 -0.8
133,113 + CCNA_00121 0.36 -0.9
133,151 + CCNA_00121 0.44 +0.2
133,164 - CCNA_00121 0.47 -0.5
133,169 - CCNA_00121 0.48 -1.0
133,186 + CCNA_00121 0.51 -0.5
133,215 - CCNA_00121 0.58 -0.7
133,254 - CCNA_00121 0.66 -0.4
133,259 - CCNA_00121 0.67 -0.5
133,259 - CCNA_00121 0.67 -0.9
133,261 + CCNA_00121 0.68 -1.2
133,261 + CCNA_00121 0.68 -1.0
133,261 + CCNA_00121 0.68 +0.9
133,261 - CCNA_00121 0.68 +0.0
133,261 - CCNA_00121 0.68 -0.5
133,313 + CCNA_00121 0.79 -1.3
133,313 + CCNA_00121 0.79 +0.3
133,321 - CCNA_00121 0.81 +0.3
133,321 - CCNA_00121 0.81 -0.5
133,321 - CCNA_00121 0.81 -0.1
133,321 - CCNA_00121 0.81 -0.5
133,321 - CCNA_00121 0.81 -0.1
133,335 + CCNA_00121 0.84 -1.2
133,335 + CCNA_00121 0.84 +0.5
133,343 - CCNA_00121 0.86 +0.3
133,343 - CCNA_00121 0.86 -2.3
133,343 - CCNA_00121 0.86 -0.1
133,343 - CCNA_00121 0.86 +0.3
133,362 + CCNA_00121 0.90 -2.6
133,362 + CCNA_00121 0.90 +0.3
133,370 + -1.4
133,370 - -2.2
133,378 - +0.5
133,383 - -1.9
133,406 - +2.4
133,426 + -1.0
133,455 - +0.5
133,489 - CCNA_00122 0.18 -1.7
133,593 - CCNA_00122 0.43 -0.3
133,609 - CCNA_00122 0.47 -1.4
133,641 + CCNA_00122 0.55 -0.5
133,759 - CCNA_00122 0.83 -0.9
133,808 + -0.1
133,830 + -1.9
133,830 + -1.2
133,830 + -0.7
133,838 - -0.7
133,960 + -0.9
133,961 - +0.7
133,997 - CCNA_00123 0.12 +2.9
133,997 - CCNA_00123 0.12 +0.0
133,999 + CCNA_00123 0.13 -0.4
134,022 - CCNA_00123 0.16 +0.9
134,027 + CCNA_00123 0.16 -0.9
134,180 - CCNA_00123 0.36 -0.2
134,204 - CCNA_00123 0.39 -1.2
134,217 + CCNA_00123 0.40 +1.5
134,245 + CCNA_00123 0.44 -0.3
134,253 - CCNA_00123 0.45 -3.2
134,253 - CCNA_00123 0.45 -0.1
134,258 - CCNA_00123 0.46 +0.2
134,290 + CCNA_00123 0.50 -0.7
134,343 + CCNA_00123 0.57 -0.4
134,401 + CCNA_00123 0.64 +0.1
134,428 + CCNA_00123 0.67 -0.7
134,469 + CCNA_00123 0.73 +0.4
134,482 - CCNA_00123 0.74 -0.7
134,501 - CCNA_00123 0.77 +0.2
134,501 - CCNA_00123 0.77 +0.9
134,529 + CCNA_00123 0.80 -0.8
134,576 - CCNA_00123 0.86 -1.2
134,588 - CCNA_00123 0.88 -2.5
134,607 + -0.8
134,644 - -1.8
134,676 + -0.2
134,676 + +0.5
134,681 + -0.0
134,802 + -2.8
134,809 + -0.7
134,810 - -0.4

Or see this region's nucleotide sequence