Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0094

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVUA0093 and chrB are separated by 9 nucleotideschrB and DORF765 overlap by 14 nucleotidesDORF765 and DORF768 are separated by 63 nucleotidesDORF768 and DVUA0096 are separated by 332 nucleotides DVUA0093: DVUA0093 - chromate transport family protein (TIGR), at 125,839 to 127,176 DVUA0093 DVUA0094: chrB - chrB protein (TIGR), at 127,186 to 128,190 chrB DORF765: DORF765 - SEED: Rhodanese-like protein ChrE, at 128,177 to 128,488 DORF765 DORF768: DORF768 - no description, at 128,552 to 128,830 DORF768 DVUA0096: DVUA0096 - major facilitator superfamily protein (TIGR), at 129,163 to 130,374 DVUA0096 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 126.190 kb on - strand, within DVUA0093at 126.287 kb on + strand, within DVUA0093at 126.373 kb on + strand, within DVUA0093at 126.383 kb on + strand, within DVUA0093at 126.388 kb on + strand, within DVUA0093at 126.396 kb on - strand, within DVUA0093at 126.396 kb on - strand, within DVUA0093at 126.398 kb on + strand, within DVUA0093at 126.474 kb on - strand, within DVUA0093at 126.501 kb on + strand, within DVUA0093at 126.530 kb on + strand, within DVUA0093at 126.550 kb on - strand, within DVUA0093at 126.629 kb on + strand, within DVUA0093at 126.673 kb on + strand, within DVUA0093at 126.690 kb on + strand, within DVUA0093at 126.780 kb on + strand, within DVUA0093at 126.785 kb on + strand, within DVUA0093at 126.821 kb on + strand, within DVUA0093at 126.821 kb on + strand, within DVUA0093at 126.912 kb on + strand, within DVUA0093at 127.164 kb on + strandat 127.183 kb on + strandat 127.196 kb on - strandat 127.221 kb on + strandat 127.352 kb on - strand, within chrBat 127.376 kb on + strand, within chrBat 127.400 kb on - strand, within chrBat 127.453 kb on + strand, within chrBat 127.476 kb on + strand, within chrBat 127.580 kb on - strand, within chrBat 127.649 kb on + strand, within chrBat 127.693 kb on + strand, within chrBat 127.743 kb on - strand, within chrBat 127.757 kb on + strand, within chrBat 127.767 kb on + strand, within chrBat 127.898 kb on + strand, within chrBat 127.947 kb on - strand, within chrBat 127.963 kb on + strand, within chrBat 127.980 kb on + strand, within chrBat 128.027 kb on + strand, within chrBat 128.035 kb on - strand, within chrBat 128.172 kb on - strandat 128.174 kb on + strandat 128.182 kb on - strandat 128.182 kb on - strandat 128.235 kb on + strand, within DORF765at 128.295 kb on + strand, within DORF765at 128.305 kb on - strand, within DORF765at 128.335 kb on - strand, within DORF765at 128.340 kb on + strand, within DORF765at 128.395 kb on - strand, within DORF765at 128.469 kb on + strandat 128.489 kb on + strandat 128.502 kb on + strandat 128.557 kb on - strandat 128.616 kb on + strand, within DORF768at 128.728 kb on - strand, within DORF768at 128.759 kb on + strand, within DORF768at 128.766 kb on + strand, within DORF768at 128.821 kb on + strandat 128.855 kb on + strandat 128.934 kb on - strandat 128.976 kb on - strandat 129.092 kb on + strandat 129.186 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
remove
126,190 - DVUA0093 0.26 -0.3
126,287 + DVUA0093 0.33 +0.1
126,373 + DVUA0093 0.40 -0.1
126,383 + DVUA0093 0.41 +0.0
126,388 + DVUA0093 0.41 +0.1
126,396 - DVUA0093 0.42 +0.1
126,396 - DVUA0093 0.42 +1.5
126,398 + DVUA0093 0.42 +0.9
126,474 - DVUA0093 0.47 -0.2
126,501 + DVUA0093 0.49 -2.3
126,530 + DVUA0093 0.52 -0.5
126,550 - DVUA0093 0.53 -0.3
126,629 + DVUA0093 0.59 +0.2
126,673 + DVUA0093 0.62 -0.5
126,690 + DVUA0093 0.64 +0.2
126,780 + DVUA0093 0.70 +0.3
126,785 + DVUA0093 0.71 -0.2
126,821 + DVUA0093 0.73 -1.6
126,821 + DVUA0093 0.73 +0.0
126,912 + DVUA0093 0.80 +0.2
127,164 + -1.0
127,183 + -0.3
127,196 - -0.5
127,221 + +0.6
127,352 - chrB DVUA0094 0.17 +0.9
127,376 + chrB DVUA0094 0.19 +0.8
127,400 - chrB DVUA0094 0.21 +0.6
127,453 + chrB DVUA0094 0.27 -1.9
127,476 + chrB DVUA0094 0.29 +0.9
127,580 - chrB DVUA0094 0.39 +0.6
127,649 + chrB DVUA0094 0.46 +0.7
127,693 + chrB DVUA0094 0.50 +0.7
127,743 - chrB DVUA0094 0.55 -0.3
127,757 + chrB DVUA0094 0.57 +0.5
127,767 + chrB DVUA0094 0.58 -0.7
127,898 + chrB DVUA0094 0.71 -1.3
127,947 - chrB DVUA0094 0.76 -1.7
127,963 + chrB DVUA0094 0.77 +0.2
127,980 + chrB DVUA0094 0.79 +0.7
128,027 + chrB DVUA0094 0.84 +0.5
128,035 - chrB DVUA0094 0.84 +1.0
128,172 - +0.7
128,174 + +0.2
128,182 - -0.2
128,182 - -0.2
128,235 + DORF765 0.19 +0.5
128,295 + DORF765 0.38 -0.2
128,305 - DORF765 0.41 +0.5
128,335 - DORF765 0.51 +0.5
128,340 + DORF765 0.52 -0.2
128,395 - DORF765 0.70 -0.1
128,469 + -0.6
128,489 + +0.7
128,502 + +2.2
128,557 - +0.2
128,616 + DORF768 0.23 -0.7
128,728 - DORF768 0.63 +0.4
128,759 + DORF768 0.74 +1.5
128,766 + DORF768 0.77 +0.3
128,821 + -0.7
128,855 + +1.9
128,934 - +0.7
128,976 - +0.3
129,092 + +0.5
129,186 + +0.2

Or see this region's nucleotide sequence