Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1398

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbfr and DVU1398 are separated by 395 nucleotidesDVU1398 and DVU1399 overlap by 4 nucleotidesDVU1399 and DVU1400 are separated by 89 nucleotides DVU1397: bfr - bacterioferritin (TIGR), at 1,466,087 to 1,466,626 bfr DVU1398: DVU1398 - ISDvu2, transposase OrfB (TIGR), at 1,467,022 to 1,467,864 DVU1398 DVU1399: DVU1399 - ISDvu2, transposase OrfA (TIGR), at 1,467,861 to 1,468,259 DVU1399 DVU1400: DVU1400 - methyl-accepting chemotaxis protein (TIGR), at 1,468,349 to 1,470,241 DVU1400 Position (kb) 1467 1468Strain fitness (log2 ratio) -2 -1 0 1at 1466.024 kb on - strandat 1466.072 kb on - strandat 1466.107 kb on - strandat 1466.151 kb on + strand, within bfrat 1466.178 kb on + strand, within bfrat 1466.186 kb on - strand, within bfrat 1466.219 kb on + strand, within bfrat 1466.241 kb on + strand, within bfrat 1466.351 kb on + strand, within bfrat 1466.496 kb on - strand, within bfrat 1466.526 kb on + strand, within bfrat 1466.983 kb on + strandat 1468.285 kb on + strandat 1468.292 kb on + strandat 1468.339 kb on + strandat 1468.347 kb on - strandat 1468.377 kb on - strandat 1468.419 kb on - strandat 1468.425 kb on + strandat 1468.441 kb on + strandat 1468.533 kb on - strandat 1468.544 kb on + strand, within DVU1400at 1468.603 kb on + strand, within DVU1400at 1468.728 kb on + strand, within DVU1400at 1468.792 kb on + strand, within DVU1400at 1468.812 kb on - strand, within DVU1400at 1468.864 kb on + strand, within DVU1400

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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1,466,024 - -0.7
1,466,072 - +0.2
1,466,107 - +0.9
1,466,151 + bfr DVU1397 0.12 -0.2
1,466,178 + bfr DVU1397 0.17 +0.6
1,466,186 - bfr DVU1397 0.18 +0.7
1,466,219 + bfr DVU1397 0.24 -2.1
1,466,241 + bfr DVU1397 0.29 +0.1
1,466,351 + bfr DVU1397 0.49 +0.0
1,466,496 - bfr DVU1397 0.76 +0.1
1,466,526 + bfr DVU1397 0.81 -0.3
1,466,983 + -0.0
1,468,285 + -0.1
1,468,292 + +0.0
1,468,339 + +1.0
1,468,347 - +0.6
1,468,377 - +0.1
1,468,419 - -1.0
1,468,425 + -1.6
1,468,441 + -0.1
1,468,533 - +0.0
1,468,544 + DVU1400 0.10 +0.6
1,468,603 + DVU1400 0.13 -0.1
1,468,728 + DVU1400 0.20 -0.2
1,468,792 + DVU1400 0.23 -0.6
1,468,812 - DVU1400 0.24 +0.2
1,468,864 + DVU1400 0.27 +0.2

Or see this region's nucleotide sequence