Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1699

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF12810 and DVU1698 are separated by 34 nucleotidesDVU1698 and DVU1699 are separated by 366 nucleotidesDVU1699 and DVU1700 are separated by 267 nucleotides DORF12810: DORF12810 - no description, at 1,772,242 to 1,773,051 DORF12810 DVU1698: DVU1698 - hypothetical protein (TIGR), at 1,773,086 to 1,773,571 DVU1698 DVU1699: DVU1699 - hypothetical protein (TIGR), at 1,773,938 to 1,774,057 DVU1699 DVU1700: DVU1700 - metallo-beta-lactamase family protein (TIGR), at 1,774,325 to 1,775,572 DVU1700 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -1 0 1at 1772.941 kb on + strand, within DORF12810at 1772.948 kb on + strand, within DORF12810at 1772.975 kb on + strandat 1773.181 kb on - strand, within DVU1698at 1773.231 kb on - strand, within DVU1698at 1773.271 kb on - strand, within DVU1698at 1773.280 kb on - strand, within DVU1698at 1773.313 kb on - strand, within DVU1698at 1773.386 kb on + strand, within DVU1698at 1773.417 kb on + strand, within DVU1698at 1773.905 kb on - strandat 1774.079 kb on + strandat 1774.240 kb on + strandat 1774.294 kb on - strandat 1774.328 kb on + strandat 1774.483 kb on - strand, within DVU1700at 1774.519 kb on - strand, within DVU1700at 1774.521 kb on + strand, within DVU1700at 1774.588 kb on - strand, within DVU1700at 1774.594 kb on + strand, within DVU1700

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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1,772,941 + DORF12810 0.86 -0.2
1,772,948 + DORF12810 0.87 +0.3
1,772,975 + -1.2
1,773,181 - DVU1698 0.20 -1.2
1,773,231 - DVU1698 0.30 +1.2
1,773,271 - DVU1698 0.38 -0.5
1,773,280 - DVU1698 0.40 +1.0
1,773,313 - DVU1698 0.47 -0.2
1,773,386 + DVU1698 0.62 +0.2
1,773,417 + DVU1698 0.68 -0.0
1,773,905 - -0.2
1,774,079 + -0.1
1,774,240 + -0.9
1,774,294 - -0.1
1,774,328 + +1.6
1,774,483 - DVU1700 0.13 +1.1
1,774,519 - DVU1700 0.16 -0.4
1,774,521 + DVU1700 0.16 -0.1
1,774,588 - DVU1700 0.21 -0.3
1,774,594 + DVU1700 0.22 -0.3

Or see this region's nucleotide sequence