Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1332

Experiment: Pyruvate-Sulfate (60-15mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1331 and selD overlap by 11 nucleotidesselD and DVU1333 are separated by 27 nucleotidesDVU1333 and tRNA-Leu overlap by 18 nucleotidestRNA-Leu and tig are separated by 78 nucleotides DVU1331: DVU1331 - transcriptional regulator, LysR family (TIGR), at 1,407,515 to 1,408,441 DVU1331 DVU1332: selD - selenide, water dikinase, selenocysteine-containing (TIGR), at 1,408,431 to 1,409,486 selD DVU1333: DVU1333 - hypothetical protein (TIGR), at 1,409,514 to 1,409,639 DVU1333 DVU_tRNA-Leu-3: tRNA-Leu - tRNA with anticodon TAG for Leu (VIMSS-AUTO), at 1,409,622 to 1,409,706 tRNA-Leu DVU1334: tig - trigger factor (TIGR), at 1,409,785 to 1,411,086 tig Position (kb) 1408 1409 1410Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1407.457 kb on + strandat 1407.551 kb on + strandat 1407.581 kb on + strandat 1407.581 kb on + strandat 1407.589 kb on - strandat 1407.615 kb on + strand, within DVU1331at 1407.779 kb on + strand, within DVU1331at 1407.837 kb on + strand, within DVU1331at 1407.929 kb on - strand, within DVU1331at 1407.972 kb on + strand, within DVU1331at 1408.061 kb on - strand, within DVU1331at 1408.194 kb on - strand, within DVU1331at 1408.199 kb on - strand, within DVU1331at 1408.199 kb on - strand, within DVU1331at 1408.244 kb on - strand, within DVU1331at 1408.306 kb on + strand, within DVU1331at 1408.314 kb on - strand, within DVU1331at 1408.662 kb on - strand, within selDat 1408.709 kb on - strand, within selDat 1408.720 kb on - strand, within selDat 1408.722 kb on - strand, within selDat 1408.830 kb on + strand, within selDat 1408.838 kb on - strand, within selDat 1408.838 kb on - strand, within selDat 1408.852 kb on - strand, within selDat 1408.895 kb on + strand, within selDat 1408.928 kb on + strand, within selDat 1408.964 kb on + strand, within selDat 1409.011 kb on + strand, within selDat 1409.057 kb on + strand, within selDat 1409.060 kb on - strand, within selDat 1409.070 kb on - strand, within selDat 1409.070 kb on - strand, within selDat 1409.075 kb on + strand, within selDat 1409.125 kb on + strand, within selDat 1409.127 kb on - strand, within selDat 1409.219 kb on - strand, within selDat 1409.395 kb on - strandat 1409.450 kb on + strandat 1409.471 kb on + strandat 1409.480 kb on + strandat 1409.491 kb on + strandat 1409.706 kb on + strandat 1409.713 kb on + strandat 1409.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Selenate 750uM
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1,407,457 + +0.6
1,407,551 + -0.0
1,407,581 + +0.0
1,407,581 + +1.6
1,407,589 - +0.4
1,407,615 + DVU1331 0.11 -0.2
1,407,779 + DVU1331 0.28 +0.5
1,407,837 + DVU1331 0.35 -1.0
1,407,929 - DVU1331 0.45 -0.2
1,407,972 + DVU1331 0.49 +0.2
1,408,061 - DVU1331 0.59 +0.4
1,408,194 - DVU1331 0.73 +0.5
1,408,199 - DVU1331 0.74 +0.7
1,408,199 - DVU1331 0.74 -0.5
1,408,244 - DVU1331 0.79 -1.0
1,408,306 + DVU1331 0.85 -0.5
1,408,314 - DVU1331 0.86 -0.1
1,408,662 - selD DVU1332 0.22 -4.8
1,408,709 - selD DVU1332 0.26 -0.7
1,408,720 - selD DVU1332 0.27 -0.6
1,408,722 - selD DVU1332 0.28 -0.9
1,408,830 + selD DVU1332 0.38 +0.6
1,408,838 - selD DVU1332 0.39 +0.3
1,408,838 - selD DVU1332 0.39 +0.6
1,408,852 - selD DVU1332 0.40 -0.6
1,408,895 + selD DVU1332 0.44 -0.6
1,408,928 + selD DVU1332 0.47 -1.8
1,408,964 + selD DVU1332 0.50 -0.4
1,409,011 + selD DVU1332 0.55 -1.3
1,409,057 + selD DVU1332 0.59 -0.4
1,409,060 - selD DVU1332 0.60 -2.2
1,409,070 - selD DVU1332 0.61 -1.7
1,409,070 - selD DVU1332 0.61 -0.4
1,409,075 + selD DVU1332 0.61 -0.2
1,409,125 + selD DVU1332 0.66 +0.2
1,409,127 - selD DVU1332 0.66 -1.5
1,409,219 - selD DVU1332 0.75 -0.2
1,409,395 - -0.1
1,409,450 + -0.2
1,409,471 + -0.3
1,409,480 + +1.9
1,409,491 + +0.3
1,409,706 + +0.3
1,409,713 + +0.5
1,409,739 - -0.7

Or see this region's nucleotide sequence