Strain Fitness in Pantoea sp. MT58 around IAI47_20875

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20870 and IAI47_20875 are separated by 166 nucleotidesIAI47_20875 and IAI47_20880 are separated by 42 nucleotides IAI47_20870: IAI47_20870 - NADP-dependent oxidoreductase, at 417,505 to 418,527 _20870 IAI47_20875: IAI47_20875 - glutathione peroxidase, at 418,694 to 419,170 _20875 IAI47_20880: IAI47_20880 - esterase-like activity of phytase family protein, at 419,213 to 420,571 _20880 Position (kb) 418 419 420Strain fitness (log2 ratio) -2 -1 0 1 2 3at 417.762 kb on + strand, within IAI47_20870at 417.763 kb on - strand, within IAI47_20870at 417.781 kb on + strand, within IAI47_20870at 417.782 kb on - strand, within IAI47_20870at 417.824 kb on - strand, within IAI47_20870at 417.854 kb on + strand, within IAI47_20870at 417.855 kb on - strand, within IAI47_20870at 418.050 kb on + strand, within IAI47_20870at 418.050 kb on + strand, within IAI47_20870at 418.051 kb on - strand, within IAI47_20870at 418.051 kb on - strand, within IAI47_20870at 418.056 kb on + strand, within IAI47_20870at 418.102 kb on + strand, within IAI47_20870at 418.104 kb on + strand, within IAI47_20870at 418.138 kb on + strand, within IAI47_20870at 418.138 kb on + strand, within IAI47_20870at 418.138 kb on + strand, within IAI47_20870at 418.138 kb on + strand, within IAI47_20870at 418.138 kb on + strand, within IAI47_20870at 418.139 kb on - strand, within IAI47_20870at 418.139 kb on - strand, within IAI47_20870at 418.139 kb on - strand, within IAI47_20870at 418.139 kb on - strand, within IAI47_20870at 418.139 kb on - strand, within IAI47_20870at 418.139 kb on - strand, within IAI47_20870at 418.156 kb on - strand, within IAI47_20870at 418.196 kb on + strand, within IAI47_20870at 418.215 kb on - strand, within IAI47_20870at 418.215 kb on - strand, within IAI47_20870at 418.236 kb on - strand, within IAI47_20870at 418.284 kb on - strand, within IAI47_20870at 418.286 kb on + strand, within IAI47_20870at 418.286 kb on + strand, within IAI47_20870at 418.286 kb on + strand, within IAI47_20870at 418.286 kb on + strand, within IAI47_20870at 418.287 kb on - strand, within IAI47_20870at 418.287 kb on - strand, within IAI47_20870at 418.287 kb on - strand, within IAI47_20870at 418.287 kb on - strand, within IAI47_20870at 418.305 kb on + strand, within IAI47_20870at 418.343 kb on - strand, within IAI47_20870at 418.343 kb on - strand, within IAI47_20870at 418.386 kb on + strand, within IAI47_20870at 418.386 kb on + strand, within IAI47_20870at 418.386 kb on + strand, within IAI47_20870at 418.386 kb on + strand, within IAI47_20870at 418.386 kb on + strand, within IAI47_20870at 418.386 kb on + strand, within IAI47_20870at 418.386 kb on + strand, within IAI47_20870at 418.387 kb on - strand, within IAI47_20870at 418.387 kb on - strand, within IAI47_20870at 418.387 kb on - strand, within IAI47_20870at 418.387 kb on - strand, within IAI47_20870at 418.387 kb on - strand, within IAI47_20870at 418.388 kb on + strand, within IAI47_20870at 418.388 kb on + strand, within IAI47_20870at 418.388 kb on + strand, within IAI47_20870at 418.389 kb on - strand, within IAI47_20870at 418.389 kb on - strand, within IAI47_20870at 418.389 kb on - strand, within IAI47_20870at 418.389 kb on - strand, within IAI47_20870at 418.389 kb on - strand, within IAI47_20870at 418.416 kb on + strand, within IAI47_20870at 418.417 kb on - strand, within IAI47_20870at 418.497 kb on + strandat 418.498 kb on - strandat 418.510 kb on - strandat 418.563 kb on + strandat 418.564 kb on - strandat 418.594 kb on - strandat 418.594 kb on - strandat 418.594 kb on - strandat 418.653 kb on + strandat 418.653 kb on + strandat 418.653 kb on + strandat 418.653 kb on + strandat 418.653 kb on + strandat 418.654 kb on - strandat 418.666 kb on + strandat 418.706 kb on + strandat 418.707 kb on - strandat 418.715 kb on - strandat 418.715 kb on - strandat 418.741 kb on + strandat 418.741 kb on + strandat 418.742 kb on - strand, within IAI47_20875at 418.742 kb on - strand, within IAI47_20875at 418.742 kb on - strand, within IAI47_20875at 418.742 kb on - strand, within IAI47_20875at 418.818 kb on - strand, within IAI47_20875at 418.838 kb on + strand, within IAI47_20875at 418.839 kb on - strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.949 kb on + strand, within IAI47_20875at 418.950 kb on - strand, within IAI47_20875at 418.950 kb on - strand, within IAI47_20875at 418.950 kb on - strand, within IAI47_20875at 418.980 kb on + strand, within IAI47_20875at 418.980 kb on + strand, within IAI47_20875at 418.980 kb on + strand, within IAI47_20875at 418.980 kb on + strand, within IAI47_20875at 418.980 kb on + strand, within IAI47_20875at 418.981 kb on - strand, within IAI47_20875at 418.981 kb on - strand, within IAI47_20875at 418.981 kb on - strand, within IAI47_20875at 418.981 kb on - strand, within IAI47_20875at 418.981 kb on - strand, within IAI47_20875at 418.981 kb on - strand, within IAI47_20875at 419.057 kb on - strand, within IAI47_20875at 419.059 kb on + strand, within IAI47_20875at 419.060 kb on - strand, within IAI47_20875at 419.072 kb on - strand, within IAI47_20875at 419.075 kb on - strand, within IAI47_20875at 419.075 kb on - strand, within IAI47_20875at 419.075 kb on - strand, within IAI47_20875at 419.075 kb on - strand, within IAI47_20875at 419.155 kb on + strandat 419.156 kb on - strandat 419.156 kb on - strandat 419.182 kb on - strandat 419.182 kb on - strandat 419.214 kb on + strandat 419.215 kb on - strandat 419.236 kb on + strandat 419.237 kb on - strandat 419.237 kb on - strandat 419.237 kb on - strandat 419.239 kb on + strandat 419.240 kb on - strandat 419.240 kb on - strandat 419.274 kb on - strandat 419.308 kb on + strandat 419.309 kb on - strandat 419.346 kb on + strandat 419.347 kb on - strandat 419.354 kb on - strand, within IAI47_20880at 419.362 kb on + strand, within IAI47_20880at 419.362 kb on + strand, within IAI47_20880at 419.362 kb on + strand, within IAI47_20880at 419.363 kb on - strand, within IAI47_20880at 419.363 kb on - strand, within IAI47_20880at 419.486 kb on + strand, within IAI47_20880at 419.486 kb on + strand, within IAI47_20880at 419.487 kb on - strand, within IAI47_20880at 419.487 kb on - strand, within IAI47_20880at 419.487 kb on - strand, within IAI47_20880at 419.518 kb on + strand, within IAI47_20880at 419.518 kb on + strand, within IAI47_20880at 419.519 kb on - strand, within IAI47_20880at 419.522 kb on - strand, within IAI47_20880at 419.551 kb on + strand, within IAI47_20880at 419.576 kb on - strand, within IAI47_20880at 419.587 kb on + strand, within IAI47_20880at 419.588 kb on - strand, within IAI47_20880at 419.588 kb on - strand, within IAI47_20880at 419.588 kb on - strand, within IAI47_20880at 419.619 kb on + strand, within IAI47_20880at 419.619 kb on + strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.620 kb on - strand, within IAI47_20880at 419.623 kb on + strand, within IAI47_20880at 419.623 kb on + strand, within IAI47_20880at 419.623 kb on + strand, within IAI47_20880at 419.623 kb on + strand, within IAI47_20880at 419.623 kb on + strand, within IAI47_20880at 419.623 kb on + strand, within IAI47_20880at 419.624 kb on - strand, within IAI47_20880at 419.624 kb on - strand, within IAI47_20880at 419.624 kb on - strand, within IAI47_20880at 419.674 kb on + strand, within IAI47_20880at 419.675 kb on - strand, within IAI47_20880at 419.675 kb on - strand, within IAI47_20880at 419.675 kb on - strand, within IAI47_20880at 419.675 kb on - strand, within IAI47_20880at 419.730 kb on + strand, within IAI47_20880at 419.730 kb on + strand, within IAI47_20880at 419.731 kb on - strand, within IAI47_20880at 419.731 kb on - strand, within IAI47_20880at 419.757 kb on + strand, within IAI47_20880at 419.757 kb on + strand, within IAI47_20880at 419.757 kb on + strand, within IAI47_20880at 419.757 kb on + strand, within IAI47_20880at 419.757 kb on + strand, within IAI47_20880at 419.757 kb on + strand, within IAI47_20880at 419.757 kb on + strandat 419.758 kb on - strand, within IAI47_20880at 419.758 kb on - strand, within IAI47_20880at 419.758 kb on - strand, within IAI47_20880at 419.758 kb on - strand, within IAI47_20880at 419.758 kb on - strand, within IAI47_20880at 419.758 kb on - strand, within IAI47_20880at 419.758 kb on - strand, within IAI47_20880at 419.804 kb on - strand, within IAI47_20880at 419.804 kb on - strand, within IAI47_20880at 419.852 kb on + strand, within IAI47_20880at 419.853 kb on - strand, within IAI47_20880at 419.995 kb on + strand, within IAI47_20880at 419.996 kb on - strand, within IAI47_20880at 419.996 kb on - strand, within IAI47_20880at 419.996 kb on - strand, within IAI47_20880at 420.016 kb on + strand, within IAI47_20880at 420.016 kb on + strand, within IAI47_20880at 420.017 kb on - strand, within IAI47_20880at 420.033 kb on + strand, within IAI47_20880at 420.033 kb on + strand, within IAI47_20880at 420.034 kb on - strand, within IAI47_20880at 420.034 kb on - strand, within IAI47_20880at 420.034 kb on - strand, within IAI47_20880at 420.073 kb on + strand, within IAI47_20880at 420.073 kb on + strand, within IAI47_20880at 420.124 kb on + strand, within IAI47_20880at 420.124 kb on + strand, within IAI47_20880at 420.125 kb on - strand, within IAI47_20880at 420.125 kb on - strand, within IAI47_20880at 420.145 kb on + strand, within IAI47_20880at 420.146 kb on - strand, within IAI47_20880

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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417,762 + IAI47_20870 0.25 +0.4
417,763 - IAI47_20870 0.25 -0.9
417,781 + IAI47_20870 0.27 -0.7
417,782 - IAI47_20870 0.27 +0.4
417,824 - IAI47_20870 0.31 +0.6
417,854 + IAI47_20870 0.34 +0.1
417,855 - IAI47_20870 0.34 -0.9
418,050 + IAI47_20870 0.53 +0.1
418,050 + IAI47_20870 0.53 +0.8
418,051 - IAI47_20870 0.53 +0.6
418,051 - IAI47_20870 0.53 -0.6
418,056 + IAI47_20870 0.54 +1.0
418,102 + IAI47_20870 0.58 -0.4
418,104 + IAI47_20870 0.59 +1.0
418,138 + IAI47_20870 0.62 -0.9
418,138 + IAI47_20870 0.62 +1.2
418,138 + IAI47_20870 0.62 +0.6
418,138 + IAI47_20870 0.62 +0.1
418,138 + IAI47_20870 0.62 +0.8
418,139 - IAI47_20870 0.62 +0.1
418,139 - IAI47_20870 0.62 +0.2
418,139 - IAI47_20870 0.62 -0.0
418,139 - IAI47_20870 0.62 -0.2
418,139 - IAI47_20870 0.62 -0.5
418,139 - IAI47_20870 0.62 +0.6
418,156 - IAI47_20870 0.64 -1.3
418,196 + IAI47_20870 0.68 -0.5
418,215 - IAI47_20870 0.69 +1.1
418,215 - IAI47_20870 0.69 -2.0
418,236 - IAI47_20870 0.71 +2.4
418,284 - IAI47_20870 0.76 -0.5
418,286 + IAI47_20870 0.76 +0.6
418,286 + IAI47_20870 0.76 -1.0
418,286 + IAI47_20870 0.76 +0.6
418,286 + IAI47_20870 0.76 -0.6
418,287 - IAI47_20870 0.76 +0.3
418,287 - IAI47_20870 0.76 +1.4
418,287 - IAI47_20870 0.76 +2.0
418,287 - IAI47_20870 0.76 -0.6
418,305 + IAI47_20870 0.78 +0.6
418,343 - IAI47_20870 0.82 -0.5
418,343 - IAI47_20870 0.82 +1.0
418,386 + IAI47_20870 0.86 +1.1
418,386 + IAI47_20870 0.86 -0.4
418,386 + IAI47_20870 0.86 +0.6
418,386 + IAI47_20870 0.86 +0.7
418,386 + IAI47_20870 0.86 +1.6
418,386 + IAI47_20870 0.86 +0.0
418,386 + IAI47_20870 0.86 -0.9
418,387 - IAI47_20870 0.86 +0.1
418,387 - IAI47_20870 0.86 +1.0
418,387 - IAI47_20870 0.86 +3.0
418,387 - IAI47_20870 0.86 -0.1
418,387 - IAI47_20870 0.86 +0.7
418,388 + IAI47_20870 0.86 -0.1
418,388 + IAI47_20870 0.86 +0.9
418,388 + IAI47_20870 0.86 +0.6
418,389 - IAI47_20870 0.86 -0.3
418,389 - IAI47_20870 0.86 -0.1
418,389 - IAI47_20870 0.86 -0.8
418,389 - IAI47_20870 0.86 +0.5
418,389 - IAI47_20870 0.86 +0.1
418,416 + IAI47_20870 0.89 +0.4
418,417 - IAI47_20870 0.89 -0.4
418,497 + -0.2
418,498 - -1.9
418,510 - +1.0
418,563 + +0.9
418,564 - -1.1
418,594 - -0.2
418,594 - -0.6
418,594 - -0.6
418,653 + +0.4
418,653 + +0.1
418,653 + +1.2
418,653 + +2.0
418,653 + +0.8
418,654 - +0.5
418,666 + +2.4
418,706 + -0.6
418,707 - +1.2
418,715 - -0.2
418,715 - -0.0
418,741 + +1.5
418,741 + +0.4
418,742 - IAI47_20875 0.10 -0.9
418,742 - IAI47_20875 0.10 +0.6
418,742 - IAI47_20875 0.10 -0.5
418,742 - IAI47_20875 0.10 -0.2
418,818 - IAI47_20875 0.26 +1.1
418,838 + IAI47_20875 0.30 +0.5
418,839 - IAI47_20875 0.30 -0.5
418,949 + IAI47_20875 0.53 -0.1
418,949 + IAI47_20875 0.53 -1.3
418,949 + IAI47_20875 0.53 -1.5
418,949 + IAI47_20875 0.53 -1.7
418,949 + IAI47_20875 0.53 -0.5
418,949 + IAI47_20875 0.53 -0.6
418,949 + IAI47_20875 0.53 +0.3
418,949 + IAI47_20875 0.53 +0.2
418,949 + IAI47_20875 0.53 +0.6
418,949 + IAI47_20875 0.53 -0.4
418,949 + IAI47_20875 0.53 +2.0
418,949 + IAI47_20875 0.53 +0.5
418,950 - IAI47_20875 0.54 +0.6
418,950 - IAI47_20875 0.54 -1.1
418,950 - IAI47_20875 0.54 -0.7
418,980 + IAI47_20875 0.60 +0.7
418,980 + IAI47_20875 0.60 -1.4
418,980 + IAI47_20875 0.60 -0.1
418,980 + IAI47_20875 0.60 +0.3
418,980 + IAI47_20875 0.60 +1.7
418,981 - IAI47_20875 0.60 +2.4
418,981 - IAI47_20875 0.60 -1.4
418,981 - IAI47_20875 0.60 +0.1
418,981 - IAI47_20875 0.60 +2.4
418,981 - IAI47_20875 0.60 +0.0
418,981 - IAI47_20875 0.60 -1.3
419,057 - IAI47_20875 0.76 -0.7
419,059 + IAI47_20875 0.77 -1.6
419,060 - IAI47_20875 0.77 +0.6
419,072 - IAI47_20875 0.79 -0.1
419,075 - IAI47_20875 0.80 -0.5
419,075 - IAI47_20875 0.80 +0.8
419,075 - IAI47_20875 0.80 -0.1
419,075 - IAI47_20875 0.80 -0.3
419,155 + +1.1
419,156 - +0.1
419,156 - -0.8
419,182 - +0.6
419,182 - +3.0
419,214 + -0.9
419,215 - +1.2
419,236 + +1.1
419,237 - +0.6
419,237 - +1.0
419,237 - -0.0
419,239 + -0.4
419,240 - +1.0
419,240 - +0.9
419,274 - -0.7
419,308 + +0.5
419,309 - +0.3
419,346 + -0.9
419,347 - +0.4
419,354 - IAI47_20880 0.10 -0.2
419,362 + IAI47_20880 0.11 -1.0
419,362 + IAI47_20880 0.11 -0.4
419,362 + IAI47_20880 0.11 +2.1
419,363 - IAI47_20880 0.11 +0.3
419,363 - IAI47_20880 0.11 +0.6
419,486 + IAI47_20880 0.20 -0.9
419,486 + IAI47_20880 0.20 -1.1
419,487 - IAI47_20880 0.20 +1.5
419,487 - IAI47_20880 0.20 +0.4
419,487 - IAI47_20880 0.20 +2.2
419,518 + IAI47_20880 0.22 -0.4
419,518 + IAI47_20880 0.22 -0.2
419,519 - IAI47_20880 0.23 -1.6
419,522 - IAI47_20880 0.23 +0.9
419,551 + IAI47_20880 0.25 +0.4
419,576 - IAI47_20880 0.27 +0.7
419,587 + IAI47_20880 0.28 +0.2
419,588 - IAI47_20880 0.28 -0.4
419,588 - IAI47_20880 0.28 +2.1
419,588 - IAI47_20880 0.28 +1.5
419,619 + IAI47_20880 0.30 +1.0
419,619 + IAI47_20880 0.30 +1.1
419,620 - IAI47_20880 0.30 +0.7
419,620 - IAI47_20880 0.30 +1.3
419,620 - IAI47_20880 0.30 -0.6
419,620 - IAI47_20880 0.30 +0.3
419,620 - IAI47_20880 0.30 +0.2
419,620 - IAI47_20880 0.30 -0.6
419,620 - IAI47_20880 0.30 +1.0
419,620 - IAI47_20880 0.30 -1.5
419,620 - IAI47_20880 0.30 +1.4
419,623 + IAI47_20880 0.30 +0.6
419,623 + IAI47_20880 0.30 -0.2
419,623 + IAI47_20880 0.30 -0.5
419,623 + IAI47_20880 0.30 -0.6
419,623 + IAI47_20880 0.30 -0.1
419,623 + IAI47_20880 0.30 -0.3
419,624 - IAI47_20880 0.30 -2.4
419,624 - IAI47_20880 0.30 -0.7
419,624 - IAI47_20880 0.30 +0.8
419,674 + IAI47_20880 0.34 -0.4
419,675 - IAI47_20880 0.34 -0.6
419,675 - IAI47_20880 0.34 +0.1
419,675 - IAI47_20880 0.34 -0.2
419,675 - IAI47_20880 0.34 +1.7
419,730 + IAI47_20880 0.38 +1.1
419,730 + IAI47_20880 0.38 -2.1
419,731 - IAI47_20880 0.38 +2.3
419,731 - IAI47_20880 0.38 +0.6
419,757 + IAI47_20880 0.40 -1.0
419,757 + IAI47_20880 0.40 +0.3
419,757 + IAI47_20880 0.40 -0.2
419,757 + IAI47_20880 0.40 -2.0
419,757 + IAI47_20880 0.40 +0.3
419,757 + IAI47_20880 0.40 +1.0
419,757 + +3.0
419,758 - IAI47_20880 0.40 +1.3
419,758 - IAI47_20880 0.40 -0.5
419,758 - IAI47_20880 0.40 -0.4
419,758 - IAI47_20880 0.40 +1.6
419,758 - IAI47_20880 0.40 +1.0
419,758 - IAI47_20880 0.40 -0.5
419,758 - IAI47_20880 0.40 -1.3
419,804 - IAI47_20880 0.43 +0.0
419,804 - IAI47_20880 0.43 -0.7
419,852 + IAI47_20880 0.47 +0.4
419,853 - IAI47_20880 0.47 -0.4
419,995 + IAI47_20880 0.58 +0.1
419,996 - IAI47_20880 0.58 +0.8
419,996 - IAI47_20880 0.58 +0.6
419,996 - IAI47_20880 0.58 -1.2
420,016 + IAI47_20880 0.59 +0.6
420,016 + IAI47_20880 0.59 -0.3
420,017 - IAI47_20880 0.59 -0.3
420,033 + IAI47_20880 0.60 +0.7
420,033 + IAI47_20880 0.60 +0.1
420,034 - IAI47_20880 0.60 +1.7
420,034 - IAI47_20880 0.60 +2.5
420,034 - IAI47_20880 0.60 +0.5
420,073 + IAI47_20880 0.63 +0.7
420,073 + IAI47_20880 0.63 -0.9
420,124 + IAI47_20880 0.67 -0.1
420,124 + IAI47_20880 0.67 -0.0
420,125 - IAI47_20880 0.67 -0.4
420,125 - IAI47_20880 0.67 +0.6
420,145 + IAI47_20880 0.69 +0.8
420,146 - IAI47_20880 0.69 -1.0

Or see this region's nucleotide sequence