Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20540 and IAI47_20545 overlap by 11 nucleotides IAI47_20545 and IAI47_20550 are separated by 230 nucleotides IAI47_20550 and IAI47_20555 overlap by 13 nucleotides IAI47_20555 and IAI47_20560 overlap by 8 nucleotides
IAI47_20540: IAI47_20540 - TetR/AcrR family transcriptional regulator, at 358,479 to 359,087
_20540
IAI47_20545: IAI47_20545 - NAD(P)H-dependent oxidoreductase, at 359,077 to 359,679
_20545
IAI47_20550: IAI47_20550 - ABC transporter permease, at 359,910 to 360,578
_20550
IAI47_20555: IAI47_20555 - ATP-binding cassette domain-containing protein, at 360,566 to 361,354
_20555
IAI47_20560: IAI47_20560 - MetQ/NlpA family ABC transporter substrate-binding protein, at 361,347 to 362,150
_20560
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 358.930 kb on + strand, within IAI47_20540 at 358.931 kb on - strand, within IAI47_20540 at 359.071 kb on - strand at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.170 kb on + strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.383 kb on + strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.420 kb on + strand, within IAI47_20545 at 359.421 kb on - strand, within IAI47_20545 at 359.598 kb on + strand, within IAI47_20545 at 359.599 kb on - strand, within IAI47_20545 at 359.665 kb on + strand at 359.665 kb on + strand at 359.665 kb on + strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.692 kb on - strand at 359.692 kb on - strand at 359.729 kb on - strand at 359.734 kb on + strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.840 kb on - strand at 359.902 kb on + strand at 359.904 kb on + strand at 359.905 kb on - strand at 359.905 kb on - strand at 359.911 kb on + strand at 359.911 kb on + strand at 359.912 kb on - strand at 359.920 kb on + strand at 359.968 kb on - strand at 360.026 kb on - strand, within IAI47_20550 at 360.171 kb on - strand, within IAI47_20550 at 360.195 kb on + strand, within IAI47_20550 at 360.195 kb on + strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.196 kb on - strand, within IAI47_20550 at 360.248 kb on + strand, within IAI47_20550 at 360.248 kb on + strand, within IAI47_20550 at 360.333 kb on - strand, within IAI47_20550 at 360.384 kb on - strand, within IAI47_20550 at 360.395 kb on + strand, within IAI47_20550 at 360.395 kb on + strand, within IAI47_20550 at 360.396 kb on - strand, within IAI47_20550 at 360.514 kb on + strand at 360.514 kb on + strand at 360.514 kb on + strand at 360.514 kb on + strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.515 kb on - strand at 360.563 kb on + strand at 360.563 kb on + strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.564 kb on - strand at 360.572 kb on + strand at 360.572 kb on + strand at 360.572 kb on + strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.573 kb on - strand at 360.585 kb on - strand at 360.600 kb on + strand at 360.601 kb on - strand at 360.835 kb on + strand, within IAI47_20555 at 360.835 kb on + strand, within IAI47_20555 at 360.835 kb on + strand, within IAI47_20555 at 360.836 kb on - strand, within IAI47_20555 at 360.836 kb on - strand, within IAI47_20555 at 360.836 kb on - strand, within IAI47_20555 at 360.836 kb on - strand, within IAI47_20555 at 360.836 kb on - strand, within IAI47_20555 at 360.836 kb on - strand, within IAI47_20555 at 361.064 kb on + strand, within IAI47_20555 at 361.065 kb on - strand, within IAI47_20555 at 361.065 kb on - strand, within IAI47_20555 at 361.065 kb on - strand, within IAI47_20555 at 361.217 kb on + strand, within IAI47_20555 at 361.217 kb on + strand, within IAI47_20555 at 361.218 kb on - strand, within IAI47_20555 at 361.323 kb on + strand at 361.324 kb on - strand at 361.324 kb on - strand at 361.324 kb on - strand at 361.331 kb on - strand at 361.348 kb on + strand at 361.403 kb on + strand at 361.403 kb on + strand at 361.446 kb on + strand, within IAI47_20560 at 361.464 kb on - strand, within IAI47_20560 at 361.505 kb on + strand, within IAI47_20560 at 361.567 kb on + strand, within IAI47_20560 at 361.567 kb on + strand, within IAI47_20560 at 361.568 kb on - strand, within IAI47_20560 at 361.568 kb on - strand, within IAI47_20560 at 361.568 kb on - strand, within IAI47_20560 at 361.568 kb on - strand, within IAI47_20560 at 361.568 kb on - strand, within IAI47_20560 at 361.578 kb on - strand, within IAI47_20560
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 358,930 + IAI47_20540 0.74 +1.0 358,931 - IAI47_20540 0.74 +0.6 359,071 - +1.4 359,138 + IAI47_20545 0.10 -1.0 359,138 + IAI47_20545 0.10 -2.2 359,138 + IAI47_20545 0.10 +0.4 359,138 + IAI47_20545 0.10 -0.6 359,138 + IAI47_20545 0.10 -0.2 359,139 - IAI47_20545 0.10 -0.0 359,139 - IAI47_20545 0.10 -0.5 359,170 + IAI47_20545 0.15 -1.4 359,171 - IAI47_20545 0.16 +1.3 359,171 - IAI47_20545 0.16 -1.3 359,171 - IAI47_20545 0.16 +0.5 359,171 - IAI47_20545 0.16 +0.2 359,383 + IAI47_20545 0.51 +3.0 359,384 - IAI47_20545 0.51 +1.9 359,384 - IAI47_20545 0.51 -0.5 359,384 - IAI47_20545 0.51 +0.0 359,384 - IAI47_20545 0.51 +0.4 359,420 + IAI47_20545 0.57 -1.4 359,421 - IAI47_20545 0.57 +2.2 359,598 + IAI47_20545 0.86 +1.1 359,599 - IAI47_20545 0.87 +1.5 359,665 + -0.5 359,665 + -0.5 359,665 + +1.2 359,666 - -0.2 359,666 - +0.1 359,666 - +0.2 359,666 - +2.0 359,666 - +1.3 359,668 + +0.9 359,668 + +2.8 359,668 + -0.5 359,669 - +0.5 359,669 - -1.9 359,669 - +0.8 359,669 - -0.9 359,669 - +0.4 359,669 - -0.4 359,669 - +0.5 359,691 + +0.2 359,691 + -1.2 359,691 + -1.3 359,692 - -0.0 359,692 - +1.1 359,729 - +0.2 359,734 + -0.1 359,756 - -0.2 359,756 - -1.0 359,756 - -0.6 359,840 - -1.2 359,902 + +0.3 359,904 + +0.5 359,905 - +0.5 359,905 - -0.2 359,911 + +0.7 359,911 + -0.2 359,912 - -0.2 359,920 + +1.2 359,968 - +1.0 360,026 - IAI47_20550 0.17 +2.5 360,171 - IAI47_20550 0.39 +2.5 360,195 + IAI47_20550 0.43 -0.5 360,195 + IAI47_20550 0.43 +0.0 360,196 - IAI47_20550 0.43 +2.5 360,196 - IAI47_20550 0.43 +0.6 360,196 - IAI47_20550 0.43 +0.5 360,196 - IAI47_20550 0.43 +0.4 360,196 - IAI47_20550 0.43 +1.3 360,248 + IAI47_20550 0.51 +0.5 360,248 + IAI47_20550 0.51 +0.3 360,333 - IAI47_20550 0.63 +0.5 360,384 - IAI47_20550 0.71 +1.2 360,395 + IAI47_20550 0.72 +1.1 360,395 + IAI47_20550 0.72 +1.0 360,396 - IAI47_20550 0.73 +1.4 360,514 + +0.9 360,514 + +3.0 360,514 + +0.6 360,514 + +0.6 360,515 - +0.1 360,515 - +1.1 360,515 - -0.2 360,515 - +2.0 360,515 - +0.6 360,515 - +0.0 360,515 - +0.1 360,515 - +0.5 360,563 + +1.4 360,563 + +0.8 360,564 - -1.0 360,564 - -1.4 360,564 - +1.5 360,564 - +2.1 360,572 + +0.9 360,572 + +0.4 360,572 + -0.2 360,573 - +1.0 360,573 - +0.7 360,573 - +0.2 360,573 - -0.3 360,585 - -0.7 360,600 + +0.8 360,601 - +0.2 360,835 + IAI47_20555 0.34 +1.0 360,835 + IAI47_20555 0.34 -0.0 360,835 + IAI47_20555 0.34 +0.8 360,836 - IAI47_20555 0.34 +0.2 360,836 - IAI47_20555 0.34 +0.4 360,836 - IAI47_20555 0.34 +0.3 360,836 - IAI47_20555 0.34 +1.0 360,836 - IAI47_20555 0.34 -0.5 360,836 - IAI47_20555 0.34 -0.9 361,064 + IAI47_20555 0.63 +1.1 361,065 - IAI47_20555 0.63 +1.5 361,065 - IAI47_20555 0.63 -0.5 361,065 - IAI47_20555 0.63 -0.4 361,217 + IAI47_20555 0.83 +2.8 361,217 + IAI47_20555 0.83 +0.4 361,218 - IAI47_20555 0.83 +0.2 361,323 + -0.7 361,324 - +1.2 361,324 - +0.4 361,324 - +0.2 361,331 - -1.3 361,348 + +1.1 361,403 + -1.2 361,403 + +1.5 361,446 + IAI47_20560 0.12 +0.2 361,464 - IAI47_20560 0.15 -1.1 361,505 + IAI47_20560 0.20 -0.0 361,567 + IAI47_20560 0.27 -1.9 361,567 + IAI47_20560 0.27 +0.8 361,568 - IAI47_20560 0.27 -0.4 361,568 - IAI47_20560 0.27 +0.9 361,568 - IAI47_20560 0.27 +0.7 361,568 - IAI47_20560 0.27 +0.9 361,568 - IAI47_20560 0.27 +1.5 361,578 - IAI47_20560 0.29 -0.0
Or see this region's nucleotide sequence