Strain Fitness in Pantoea sp. MT58 around IAI47_20490

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20485 and IAI47_20490 are separated by 281 nucleotidesIAI47_20490 and IAI47_20495 are separated by 8 nucleotides IAI47_20485: IAI47_20485 - HTH-type transcriptional regulator MalT, at 341,883 to 344,585 _20485 IAI47_20490: IAI47_20490 - maltodextrin phosphorylase, at 344,867 to 347,269 _20490 IAI47_20495: IAI47_20495 - 4-alpha-glucanotransferase, at 347,278 to 349,353 _20495 Position (kb) 344 345 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 344.027 kb on + strand, within IAI47_20485at 344.028 kb on - strand, within IAI47_20485at 344.105 kb on + strand, within IAI47_20485at 344.120 kb on + strand, within IAI47_20485at 344.120 kb on + strand, within IAI47_20485at 344.120 kb on + strand, within IAI47_20485at 344.120 kb on + strand, within IAI47_20485at 344.121 kb on - strand, within IAI47_20485at 344.197 kb on + strand, within IAI47_20485at 344.197 kb on + strand, within IAI47_20485at 344.281 kb on + strand, within IAI47_20485at 344.281 kb on + strand, within IAI47_20485at 344.281 kb on + strand, within IAI47_20485at 344.282 kb on - strand, within IAI47_20485at 344.349 kb on + strandat 344.349 kb on + strandat 344.349 kb on + strandat 344.350 kb on - strandat 344.350 kb on - strandat 344.350 kb on - strandat 344.350 kb on - strandat 344.356 kb on + strandat 344.356 kb on + strandat 344.357 kb on - strandat 344.400 kb on + strandat 344.400 kb on + strandat 344.401 kb on - strandat 344.439 kb on + strandat 344.439 kb on + strandat 344.440 kb on - strandat 344.440 kb on - strandat 344.440 kb on - strandat 344.482 kb on - strandat 344.491 kb on + strandat 344.491 kb on + strandat 344.492 kb on - strandat 344.492 kb on - strandat 344.492 kb on - strandat 344.495 kb on + strandat 344.577 kb on + strandat 344.577 kb on + strandat 344.581 kb on - strandat 344.581 kb on - strandat 344.581 kb on - strandat 344.581 kb on - strandat 344.621 kb on - strandat 344.634 kb on + strandat 344.645 kb on + strandat 344.693 kb on + strandat 344.737 kb on - strandat 344.737 kb on - strandat 344.742 kb on + strandat 344.743 kb on - strandat 344.743 kb on - strandat 344.743 kb on - strandat 344.766 kb on + strandat 344.779 kb on + strandat 344.780 kb on - strandat 344.899 kb on + strandat 344.899 kb on + strandat 344.900 kb on - strandat 345.031 kb on + strandat 345.031 kb on + strandat 345.052 kb on + strandat 345.052 kb on + strandat 345.052 kb on + strandat 345.052 kb on + strandat 345.052 kb on + strandat 345.053 kb on - strandat 345.053 kb on - strandat 345.053 kb on - strandat 345.053 kb on - strandat 345.053 kb on - strandat 345.053 kb on - strandat 345.053 kb on - strandat 345.056 kb on + strandat 345.056 kb on + strandat 345.056 kb on + strandat 345.056 kb on + strandat 345.056 kb on + strandat 345.056 kb on + strandat 345.056 kb on + strandat 345.057 kb on - strandat 345.057 kb on - strandat 345.057 kb on - strandat 345.057 kb on - strandat 345.057 kb on - strandat 345.057 kb on - strandat 345.119 kb on + strand, within IAI47_20490at 345.120 kb on - strand, within IAI47_20490at 345.120 kb on - strand, within IAI47_20490at 345.133 kb on + strand, within IAI47_20490at 345.275 kb on + strand, within IAI47_20490at 345.275 kb on + strand, within IAI47_20490at 345.276 kb on - strand, within IAI47_20490at 345.276 kb on - strand, within IAI47_20490at 345.276 kb on - strand, within IAI47_20490at 345.287 kb on + strand, within IAI47_20490at 345.287 kb on + strand, within IAI47_20490at 345.288 kb on - strand, within IAI47_20490at 345.293 kb on + strand, within IAI47_20490at 345.293 kb on + strand, within IAI47_20490at 345.293 kb on + strand, within IAI47_20490at 345.293 kb on + strand, within IAI47_20490at 345.293 kb on + strand, within IAI47_20490at 345.293 kb on + strand, within IAI47_20490at 345.294 kb on - strand, within IAI47_20490at 345.376 kb on + strand, within IAI47_20490at 345.377 kb on - strand, within IAI47_20490at 345.382 kb on + strand, within IAI47_20490at 345.394 kb on + strand, within IAI47_20490at 345.490 kb on - strand, within IAI47_20490at 345.496 kb on - strand, within IAI47_20490at 345.498 kb on + strand, within IAI47_20490at 345.498 kb on + strand, within IAI47_20490at 345.498 kb on + strand, within IAI47_20490at 345.498 kb on + strand, within IAI47_20490at 345.499 kb on - strand, within IAI47_20490at 345.499 kb on - strand, within IAI47_20490at 345.499 kb on - strand, within IAI47_20490at 345.499 kb on - strand, within IAI47_20490at 345.499 kb on - strand, within IAI47_20490at 345.503 kb on + strand, within IAI47_20490at 345.644 kb on + strand, within IAI47_20490at 345.671 kb on - strand, within IAI47_20490at 345.671 kb on - strand, within IAI47_20490at 345.695 kb on + strand, within IAI47_20490at 345.695 kb on + strand, within IAI47_20490at 345.696 kb on - strand, within IAI47_20490at 345.696 kb on - strand, within IAI47_20490at 345.859 kb on + strand, within IAI47_20490at 345.859 kb on + strand, within IAI47_20490at 345.859 kb on + strand, within IAI47_20490at 345.859 kb on + strand, within IAI47_20490at 345.859 kb on + strand, within IAI47_20490at 345.903 kb on - strand, within IAI47_20490at 345.913 kb on + strand, within IAI47_20490at 345.914 kb on - strand, within IAI47_20490at 345.914 kb on - strand, within IAI47_20490at 345.914 kb on - strand, within IAI47_20490at 345.914 kb on - strand, within IAI47_20490at 345.914 kb on - strand, within IAI47_20490at 345.914 kb on - strand, within IAI47_20490at 345.979 kb on + strand, within IAI47_20490at 345.991 kb on + strand, within IAI47_20490at 345.991 kb on + strand, within IAI47_20490at 345.992 kb on - strand, within IAI47_20490at 345.992 kb on - strand, within IAI47_20490at 345.992 kb on - strand, within IAI47_20490at 345.992 kb on - strand, within IAI47_20490at 346.081 kb on + strand, within IAI47_20490at 346.082 kb on - strand, within IAI47_20490at 346.161 kb on + strand, within IAI47_20490at 346.161 kb on + strand, within IAI47_20490at 346.161 kb on + strand, within IAI47_20490at 346.184 kb on + strand, within IAI47_20490at 346.231 kb on + strand, within IAI47_20490at 346.231 kb on + strand, within IAI47_20490at 346.231 kb on + strand, within IAI47_20490at 346.231 kb on + strand, within IAI47_20490at 346.232 kb on - strand, within IAI47_20490at 346.232 kb on - strand, within IAI47_20490at 346.232 kb on - strand, within IAI47_20490at 346.249 kb on + strand, within IAI47_20490at 346.250 kb on - strand, within IAI47_20490at 346.396 kb on + strand, within IAI47_20490at 346.396 kb on + strand, within IAI47_20490at 346.396 kb on + strand, within IAI47_20490at 346.397 kb on - strand, within IAI47_20490at 346.436 kb on - strand, within IAI47_20490at 346.468 kb on - strand, within IAI47_20490at 346.474 kb on + strand, within IAI47_20490at 346.490 kb on + strand, within IAI47_20490at 346.490 kb on + strand, within IAI47_20490at 346.490 kb on + strand, within IAI47_20490at 346.491 kb on - strand, within IAI47_20490at 346.491 kb on - strand, within IAI47_20490at 346.491 kb on - strand, within IAI47_20490at 346.634 kb on + strand, within IAI47_20490at 346.634 kb on + strand, within IAI47_20490at 346.634 kb on + strand, within IAI47_20490at 346.635 kb on - strand, within IAI47_20490at 346.635 kb on - strand, within IAI47_20490at 346.635 kb on - strand, within IAI47_20490at 346.635 kb on - strand, within IAI47_20490at 346.705 kb on + strand, within IAI47_20490at 346.706 kb on - strand, within IAI47_20490at 346.706 kb on - strand, within IAI47_20490at 346.715 kb on + strand, within IAI47_20490at 346.715 kb on + strand, within IAI47_20490at 346.716 kb on - strand, within IAI47_20490at 346.716 kb on - strand, within IAI47_20490at 346.716 kb on - strand, within IAI47_20490at 346.716 kb on - strand, within IAI47_20490at 346.775 kb on - strand, within IAI47_20490at 346.784 kb on - strand, within IAI47_20490at 346.894 kb on + strand, within IAI47_20490at 346.894 kb on + strand, within IAI47_20490at 346.895 kb on - strand, within IAI47_20490at 346.895 kb on - strand, within IAI47_20490at 346.895 kb on - strand, within IAI47_20490at 346.895 kb on - strand, within IAI47_20490at 346.900 kb on + strand, within IAI47_20490at 346.900 kb on + strand, within IAI47_20490at 346.913 kb on - strand, within IAI47_20490at 346.935 kb on + strand, within IAI47_20490at 346.950 kb on - strand, within IAI47_20490at 346.950 kb on - strand, within IAI47_20490at 346.998 kb on + strand, within IAI47_20490at 346.998 kb on + strand, within IAI47_20490at 346.999 kb on - strand, within IAI47_20490at 346.999 kb on - strand, within IAI47_20490at 346.999 kb on - strand, within IAI47_20490at 346.999 kb on - strand, within IAI47_20490at 347.091 kb on - strandat 347.091 kb on - strandat 347.117 kb on + strandat 347.117 kb on + strandat 347.118 kb on - strandat 347.332 kb on + strandat 347.332 kb on + strandat 347.332 kb on + strandat 347.332 kb on + strandat 347.332 kb on + strandat 347.334 kb on + strandat 347.334 kb on + strandat 347.334 kb on + strandat 347.334 kb on + strandat 347.335 kb on - strandat 347.335 kb on - strandat 347.588 kb on - strand, within IAI47_20495at 347.588 kb on - strand, within IAI47_20495at 347.588 kb on - strand, within IAI47_20495at 347.659 kb on + strand, within IAI47_20495at 347.660 kb on - strand, within IAI47_20495at 347.660 kb on - strand, within IAI47_20495at 347.660 kb on - strand, within IAI47_20495at 347.660 kb on - strand, within IAI47_20495at 347.716 kb on + strand, within IAI47_20495at 347.716 kb on + strand, within IAI47_20495at 347.716 kb on + strand, within IAI47_20495at 347.716 kb on + strand, within IAI47_20495at 347.716 kb on + strand, within IAI47_20495at 347.716 kb on + strand, within IAI47_20495at 347.716 kb on + strand, within IAI47_20495at 347.717 kb on - strand, within IAI47_20495at 347.823 kb on + strand, within IAI47_20495at 347.902 kb on + strand, within IAI47_20495at 347.902 kb on + strand, within IAI47_20495at 347.902 kb on + strand, within IAI47_20495at 348.020 kb on - strand, within IAI47_20495at 348.114 kb on + strand, within IAI47_20495at 348.237 kb on - strand, within IAI47_20495

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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344,027 + IAI47_20485 0.79 +0.3
344,028 - IAI47_20485 0.79 -1.8
344,105 + IAI47_20485 0.82 +0.3
344,120 + IAI47_20485 0.83 +0.6
344,120 + IAI47_20485 0.83 +1.4
344,120 + IAI47_20485 0.83 +0.6
344,120 + IAI47_20485 0.83 +1.7
344,121 - IAI47_20485 0.83 +0.6
344,197 + IAI47_20485 0.86 +0.7
344,197 + IAI47_20485 0.86 -1.9
344,281 + IAI47_20485 0.89 +0.4
344,281 + IAI47_20485 0.89 -0.7
344,281 + IAI47_20485 0.89 +0.5
344,282 - IAI47_20485 0.89 +1.3
344,349 + -0.4
344,349 + -0.8
344,349 + -0.6
344,350 - +2.6
344,350 - +1.8
344,350 - +1.4
344,350 - +1.1
344,356 + -1.3
344,356 + +0.4
344,357 - +0.1
344,400 + +0.3
344,400 + -0.5
344,401 - -1.1
344,439 + +0.6
344,439 + +0.2
344,440 - +2.0
344,440 - -1.8
344,440 - +0.8
344,482 - +0.8
344,491 + -1.3
344,491 + +0.6
344,492 - -1.1
344,492 - -1.0
344,492 - +0.8
344,495 + +0.3
344,577 + +0.4
344,577 + +0.5
344,581 - +0.6
344,581 - -1.9
344,581 - +0.3
344,581 - +1.8
344,621 - -0.1
344,634 + -0.2
344,645 + -0.3
344,693 + -0.7
344,737 - -0.2
344,737 - -0.7
344,742 + -0.3
344,743 - +2.3
344,743 - +0.7
344,743 - -1.4
344,766 + +1.1
344,779 + +0.5
344,780 - -0.8
344,899 + +2.4
344,899 + +0.3
344,900 - +0.2
345,031 + +2.5
345,031 + +0.1
345,052 + +1.6
345,052 + +4.0
345,052 + -0.7
345,052 + -0.6
345,052 + +0.3
345,053 - +1.6
345,053 - +0.2
345,053 - -0.5
345,053 - +0.2
345,053 - -0.4
345,053 - -0.3
345,053 - +0.2
345,056 + +0.3
345,056 + +0.5
345,056 + +0.4
345,056 + -0.2
345,056 + +0.4
345,056 + +0.0
345,056 + -0.3
345,057 - -0.7
345,057 - +0.9
345,057 - +1.4
345,057 - -0.2
345,057 - -0.0
345,057 - -0.6
345,119 + IAI47_20490 0.10 +2.2
345,120 - IAI47_20490 0.11 -0.1
345,120 - IAI47_20490 0.11 -0.2
345,133 + IAI47_20490 0.11 -0.2
345,275 + IAI47_20490 0.17 -1.4
345,275 + IAI47_20490 0.17 -0.2
345,276 - IAI47_20490 0.17 -0.4
345,276 - IAI47_20490 0.17 -0.0
345,276 - IAI47_20490 0.17 +0.3
345,287 + IAI47_20490 0.17 +1.4
345,287 + IAI47_20490 0.17 -0.5
345,288 - IAI47_20490 0.18 +1.0
345,293 + IAI47_20490 0.18 +1.0
345,293 + IAI47_20490 0.18 +2.8
345,293 + IAI47_20490 0.18 +1.7
345,293 + IAI47_20490 0.18 +0.9
345,293 + IAI47_20490 0.18 -0.6
345,293 + IAI47_20490 0.18 -1.1
345,294 - IAI47_20490 0.18 +0.6
345,376 + IAI47_20490 0.21 +1.3
345,377 - IAI47_20490 0.21 -0.7
345,382 + IAI47_20490 0.21 -0.8
345,394 + IAI47_20490 0.22 +2.0
345,490 - IAI47_20490 0.26 +0.2
345,496 - IAI47_20490 0.26 +0.6
345,498 + IAI47_20490 0.26 +1.4
345,498 + IAI47_20490 0.26 -0.1
345,498 + IAI47_20490 0.26 -1.6
345,498 + IAI47_20490 0.26 +0.8
345,499 - IAI47_20490 0.26 -0.7
345,499 - IAI47_20490 0.26 -0.7
345,499 - IAI47_20490 0.26 -0.0
345,499 - IAI47_20490 0.26 -1.4
345,499 - IAI47_20490 0.26 +1.0
345,503 + IAI47_20490 0.26 -0.7
345,644 + IAI47_20490 0.32 +0.4
345,671 - IAI47_20490 0.33 -0.6
345,671 - IAI47_20490 0.33 +0.6
345,695 + IAI47_20490 0.34 +1.6
345,695 + IAI47_20490 0.34 +0.2
345,696 - IAI47_20490 0.34 -0.9
345,696 - IAI47_20490 0.34 -0.9
345,859 + IAI47_20490 0.41 +0.3
345,859 + IAI47_20490 0.41 +0.6
345,859 + IAI47_20490 0.41 -0.4
345,859 + IAI47_20490 0.41 +1.0
345,859 + IAI47_20490 0.41 -0.8
345,903 - IAI47_20490 0.43 +0.6
345,913 + IAI47_20490 0.44 -1.0
345,914 - IAI47_20490 0.44 +0.1
345,914 - IAI47_20490 0.44 +0.3
345,914 - IAI47_20490 0.44 +0.4
345,914 - IAI47_20490 0.44 +0.2
345,914 - IAI47_20490 0.44 -0.3
345,914 - IAI47_20490 0.44 -0.9
345,979 + IAI47_20490 0.46 +1.0
345,991 + IAI47_20490 0.47 +0.1
345,991 + IAI47_20490 0.47 +2.2
345,992 - IAI47_20490 0.47 +1.0
345,992 - IAI47_20490 0.47 +0.5
345,992 - IAI47_20490 0.47 +0.5
345,992 - IAI47_20490 0.47 -0.6
346,081 + IAI47_20490 0.51 -0.4
346,082 - IAI47_20490 0.51 +1.3
346,161 + IAI47_20490 0.54 +0.4
346,161 + IAI47_20490 0.54 -1.7
346,161 + IAI47_20490 0.54 -0.7
346,184 + IAI47_20490 0.55 +1.3
346,231 + IAI47_20490 0.57 +0.2
346,231 + IAI47_20490 0.57 +1.0
346,231 + IAI47_20490 0.57 -0.5
346,231 + IAI47_20490 0.57 +0.2
346,232 - IAI47_20490 0.57 +0.3
346,232 - IAI47_20490 0.57 +0.4
346,232 - IAI47_20490 0.57 -0.1
346,249 + IAI47_20490 0.58 +0.8
346,250 - IAI47_20490 0.58 +0.6
346,396 + IAI47_20490 0.64 -1.0
346,396 + IAI47_20490 0.64 +1.6
346,396 + IAI47_20490 0.64 -0.6
346,397 - IAI47_20490 0.64 +0.9
346,436 - IAI47_20490 0.65 +0.1
346,468 - IAI47_20490 0.67 -1.3
346,474 + IAI47_20490 0.67 +0.8
346,490 + IAI47_20490 0.68 -0.6
346,490 + IAI47_20490 0.68 -0.6
346,490 + IAI47_20490 0.68 -0.1
346,491 - IAI47_20490 0.68 +0.3
346,491 - IAI47_20490 0.68 -0.4
346,491 - IAI47_20490 0.68 -0.0
346,634 + IAI47_20490 0.74 -0.6
346,634 + IAI47_20490 0.74 -1.0
346,634 + IAI47_20490 0.74 +0.2
346,635 - IAI47_20490 0.74 -1.9
346,635 - IAI47_20490 0.74 -1.1
346,635 - IAI47_20490 0.74 +0.1
346,635 - IAI47_20490 0.74 -1.7
346,705 + IAI47_20490 0.76 -0.5
346,706 - IAI47_20490 0.77 +1.4
346,706 - IAI47_20490 0.77 -2.0
346,715 + IAI47_20490 0.77 +0.0
346,715 + IAI47_20490 0.77 +0.7
346,716 - IAI47_20490 0.77 -1.1
346,716 - IAI47_20490 0.77 -0.5
346,716 - IAI47_20490 0.77 -2.3
346,716 - IAI47_20490 0.77 +1.0
346,775 - IAI47_20490 0.79 -1.2
346,784 - IAI47_20490 0.80 +0.7
346,894 + IAI47_20490 0.84 -0.0
346,894 + IAI47_20490 0.84 -1.0
346,895 - IAI47_20490 0.84 -0.7
346,895 - IAI47_20490 0.84 -2.0
346,895 - IAI47_20490 0.84 -1.8
346,895 - IAI47_20490 0.84 -1.1
346,900 + IAI47_20490 0.85 -0.7
346,900 + IAI47_20490 0.85 -0.7
346,913 - IAI47_20490 0.85 -0.2
346,935 + IAI47_20490 0.86 -0.0
346,950 - IAI47_20490 0.87 -1.4
346,950 - IAI47_20490 0.87 +1.4
346,998 + IAI47_20490 0.89 -0.0
346,998 + IAI47_20490 0.89 +1.0
346,999 - IAI47_20490 0.89 -0.3
346,999 - IAI47_20490 0.89 +0.6
346,999 - IAI47_20490 0.89 +0.9
346,999 - IAI47_20490 0.89 -0.5
347,091 - -0.2
347,091 - -1.0
347,117 + -0.9
347,117 + +1.6
347,118 - -0.5
347,332 + +0.3
347,332 + -1.2
347,332 + -1.4
347,332 + +0.4
347,332 + -1.3
347,334 + +1.0
347,334 + +2.5
347,334 + +0.2
347,334 + -0.9
347,335 - -0.8
347,335 - -0.9
347,588 - IAI47_20495 0.15 +1.5
347,588 - IAI47_20495 0.15 +1.9
347,588 - IAI47_20495 0.15 +0.0
347,659 + IAI47_20495 0.18 +1.4
347,660 - IAI47_20495 0.18 +0.6
347,660 - IAI47_20495 0.18 -0.7
347,660 - IAI47_20495 0.18 -0.4
347,660 - IAI47_20495 0.18 -1.9
347,716 + IAI47_20495 0.21 +0.4
347,716 + IAI47_20495 0.21 +0.3
347,716 + IAI47_20495 0.21 +2.1
347,716 + IAI47_20495 0.21 +4.4
347,716 + IAI47_20495 0.21 -0.3
347,716 + IAI47_20495 0.21 +2.5
347,716 + IAI47_20495 0.21 -1.1
347,717 - IAI47_20495 0.21 +1.0
347,823 + IAI47_20495 0.26 +0.5
347,902 + IAI47_20495 0.30 -0.2
347,902 + IAI47_20495 0.30 -0.0
347,902 + IAI47_20495 0.30 +1.2
348,020 - IAI47_20495 0.36 +1.2
348,114 + IAI47_20495 0.40 +0.5
348,237 - IAI47_20495 0.46 -0.4

Or see this region's nucleotide sequence