Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04700 and IAI47_04705 overlap by 4 nucleotides IAI47_04705 and IAI47_04710 are separated by 22 nucleotides IAI47_04710 and IAI47_04715 are separated by 162 nucleotides IAI47_04715 and IAI47_04720 are separated by 780 nucleotides
IAI47_04700: IAI47_04700 - hypothetical protein, at 991,915 to 992,857
_04700
IAI47_04705: IAI47_04705 - hypothetical protein, at 992,854 to 993,126
_04705
IAI47_04710: IAI47_04710 - hypothetical protein, at 993,149 to 993,475
_04710
IAI47_04715: IAI47_04715 - integrase, at 993,638 to 994,327
_04715
IAI47_04720: IAI47_04720 - endonuclease/exonuclease/phosphatase family protein, at 995,108 to 996,028
_04720
Position (kb) 993
994
995 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 992.640 kb on - strand, within IAI47_04700 at 992.644 kb on + strand, within IAI47_04700 at 992.765 kb on - strand at 992.829 kb on - strand at 992.829 kb on - strand at 992.829 kb on - strand at 992.831 kb on - strand at 992.869 kb on - strand at 993.053 kb on - strand, within IAI47_04705 at 993.054 kb on + strand, within IAI47_04705 at 993.057 kb on - strand, within IAI47_04705 at 993.256 kb on - strand, within IAI47_04710 at 993.260 kb on + strand, within IAI47_04710 at 993.295 kb on - strand, within IAI47_04710 at 993.316 kb on + strand, within IAI47_04710 at 993.320 kb on + strand, within IAI47_04710 at 993.321 kb on - strand, within IAI47_04710 at 993.321 kb on - strand, within IAI47_04710 at 993.323 kb on + strand, within IAI47_04710 at 993.323 kb on + strand, within IAI47_04710 at 993.323 kb on + strand, within IAI47_04710 at 993.324 kb on - strand, within IAI47_04710 at 993.327 kb on - strand, within IAI47_04710 at 993.375 kb on + strand, within IAI47_04710 at 993.489 kb on + strand at 993.522 kb on - strand at 993.534 kb on - strand at 993.586 kb on + strand at 993.587 kb on - strand at 993.587 kb on - strand at 993.595 kb on - strand at 993.619 kb on - strand at 993.671 kb on + strand at 993.671 kb on + strand at 993.672 kb on - strand at 993.721 kb on + strand, within IAI47_04715 at 993.754 kb on + strand, within IAI47_04715 at 993.755 kb on - strand, within IAI47_04715 at 993.755 kb on - strand, within IAI47_04715 at 993.755 kb on - strand, within IAI47_04715 at 993.758 kb on + strand, within IAI47_04715 at 993.759 kb on - strand, within IAI47_04715 at 993.759 kb on - strand, within IAI47_04715 at 993.791 kb on - strand, within IAI47_04715 at 993.884 kb on + strand, within IAI47_04715 at 993.884 kb on + strand, within IAI47_04715 at 993.885 kb on - strand, within IAI47_04715 at 993.885 kb on - strand, within IAI47_04715 at 993.885 kb on - strand, within IAI47_04715 at 993.906 kb on - strand, within IAI47_04715 at 993.906 kb on - strand, within IAI47_04715 at 993.906 kb on - strand, within IAI47_04715 at 993.906 kb on - strand, within IAI47_04715 at 993.927 kb on - strand, within IAI47_04715 at 993.927 kb on - strand, within IAI47_04715 at 993.933 kb on + strand, within IAI47_04715 at 993.934 kb on - strand, within IAI47_04715 at 993.934 kb on - strand, within IAI47_04715 at 993.934 kb on - strand, within IAI47_04715 at 993.945 kb on + strand, within IAI47_04715 at 993.998 kb on - strand, within IAI47_04715 at 994.024 kb on - strand, within IAI47_04715 at 994.046 kb on + strand, within IAI47_04715 at 994.047 kb on - strand, within IAI47_04715 at 994.087 kb on + strand, within IAI47_04715 at 994.087 kb on + strand, within IAI47_04715 at 994.088 kb on - strand, within IAI47_04715 at 994.088 kb on - strand, within IAI47_04715 at 994.106 kb on + strand, within IAI47_04715 at 994.106 kb on + strand, within IAI47_04715 at 994.106 kb on + strand, within IAI47_04715 at 994.106 kb on + strand, within IAI47_04715 at 994.106 kb on + strand, within IAI47_04715 at 994.106 kb on + strand, within IAI47_04715 at 994.106 kb on + strand, within IAI47_04715 at 994.107 kb on - strand, within IAI47_04715 at 994.107 kb on - strand, within IAI47_04715 at 994.107 kb on - strand, within IAI47_04715 at 994.119 kb on + strand, within IAI47_04715 at 994.119 kb on + strand, within IAI47_04715 at 994.119 kb on + strand, within IAI47_04715 at 994.119 kb on + strand, within IAI47_04715 at 994.120 kb on - strand, within IAI47_04715 at 994.121 kb on + strand, within IAI47_04715 at 994.121 kb on + strand, within IAI47_04715 at 994.121 kb on + strand, within IAI47_04715 at 994.121 kb on + strand, within IAI47_04715 at 994.122 kb on - strand, within IAI47_04715 at 994.122 kb on - strand, within IAI47_04715 at 994.122 kb on - strand, within IAI47_04715 at 994.122 kb on - strand, within IAI47_04715 at 994.126 kb on + strand, within IAI47_04715 at 994.126 kb on + strand, within IAI47_04715 at 994.126 kb on + strand, within IAI47_04715 at 994.126 kb on + strand, within IAI47_04715 at 994.126 kb on + strand, within IAI47_04715 at 994.126 kb on + strand, within IAI47_04715 at 994.127 kb on - strand, within IAI47_04715 at 994.127 kb on - strand, within IAI47_04715 at 994.132 kb on + strand, within IAI47_04715 at 994.132 kb on + strand, within IAI47_04715 at 994.132 kb on + strand, within IAI47_04715 at 994.132 kb on + strand, within IAI47_04715 at 994.132 kb on + strand, within IAI47_04715 at 994.133 kb on - strand, within IAI47_04715 at 994.133 kb on - strand, within IAI47_04715 at 994.133 kb on - strand, within IAI47_04715 at 994.133 kb on - strand, within IAI47_04715 at 994.133 kb on - strand, within IAI47_04715 at 994.137 kb on - strand, within IAI47_04715 at 994.137 kb on - strand, within IAI47_04715 at 994.163 kb on + strand, within IAI47_04715 at 994.164 kb on - strand, within IAI47_04715 at 994.164 kb on - strand, within IAI47_04715 at 994.164 kb on - strand, within IAI47_04715 at 994.189 kb on + strand, within IAI47_04715 at 994.279 kb on + strand at 994.279 kb on + strand at 994.280 kb on - strand at 994.280 kb on - strand at 994.297 kb on + strand at 994.298 kb on - strand at 994.300 kb on + strand at 994.310 kb on - strand at 994.310 kb on - strand at 994.395 kb on + strand at 994.395 kb on + strand at 994.395 kb on + strand at 994.395 kb on + strand at 994.395 kb on + strand at 994.396 kb on - strand at 994.396 kb on - strand at 994.396 kb on - strand at 994.416 kb on + strand at 994.416 kb on + strand at 994.416 kb on + strand at 994.417 kb on - strand at 994.417 kb on - strand at 994.560 kb on - strand at 994.587 kb on + strand at 994.587 kb on + strand at 994.587 kb on + strand at 994.587 kb on + strand at 994.588 kb on - strand at 994.588 kb on - strand at 994.588 kb on - strand at 994.603 kb on - strand at 994.639 kb on - strand at 994.656 kb on - strand at 994.667 kb on - strand at 994.678 kb on - strand at 994.682 kb on + strand at 994.702 kb on + strand at 994.702 kb on + strand at 994.703 kb on - strand at 994.765 kb on + strand at 994.765 kb on + strand at 994.765 kb on + strand at 994.765 kb on + strand at 994.765 kb on + strand at 994.765 kb on + strand at 994.765 kb on + strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.768 kb on + strand at 994.768 kb on + strand at 994.768 kb on + strand at 994.768 kb on + strand at 994.768 kb on + strand at 994.768 kb on + strand at 994.768 kb on + strand at 994.769 kb on - strand at 994.769 kb on - strand at 994.769 kb on - strand at 994.769 kb on - strand at 994.769 kb on - strand at 994.825 kb on + strand at 994.825 kb on + strand at 994.831 kb on + strand at 994.831 kb on + strand at 994.831 kb on + strand at 994.832 kb on - strand at 994.842 kb on + strand at 994.842 kb on + strand at 994.842 kb on + strand at 994.842 kb on + strand at 994.842 kb on + strand at 994.843 kb on - strand at 994.845 kb on + strand at 994.845 kb on + strand at 994.845 kb on + strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.855 kb on + strand at 994.855 kb on + strand at 994.855 kb on + strand at 994.855 kb on + strand at 994.855 kb on + strand at 994.855 kb on + strand at 994.855 kb on + strand at 994.856 kb on - strand at 994.856 kb on - strand at 994.856 kb on - strand at 994.856 kb on - strand at 994.856 kb on - strand at 994.861 kb on + strand at 994.862 kb on - strand at 994.896 kb on - strand at 994.896 kb on - strand at 994.936 kb on + strand at 994.936 kb on + strand at 994.936 kb on + strand at 994.936 kb on + strand at 994.936 kb on + strand at 994.936 kb on + strand at 994.937 kb on - strand at 994.937 kb on - strand at 994.937 kb on - strand at 994.937 kb on - strand at 994.937 kb on - strand at 994.949 kb on + strand at 994.949 kb on + strand at 994.950 kb on - strand at 994.975 kb on + strand at 995.024 kb on + strand at 995.025 kb on - strand at 995.033 kb on + strand at 995.033 kb on + strand at 995.034 kb on - strand at 995.034 kb on - strand at 995.062 kb on - strand at 995.062 kb on - strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.085 kb on + strand at 995.085 kb on + strand at 995.086 kb on - strand at 995.127 kb on + strand at 995.127 kb on + strand at 995.131 kb on + strand at 995.131 kb on + strand at 995.132 kb on - strand at 995.132 kb on - strand at 995.132 kb on - strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.134 kb on - strand at 995.134 kb on - strand at 995.134 kb on - strand at 995.147 kb on - strand at 995.194 kb on + strand at 995.194 kb on + strand at 995.195 kb on - strand at 995.201 kb on + strand, within IAI47_04720 at 995.202 kb on - strand, within IAI47_04720 at 995.214 kb on + strand, within IAI47_04720 at 995.217 kb on + strand, within IAI47_04720 at 995.217 kb on + strand, within IAI47_04720 at 995.251 kb on + strand, within IAI47_04720 at 995.251 kb on + strand, within IAI47_04720 at 995.251 kb on + strand, within IAI47_04720 at 995.253 kb on + strand, within IAI47_04720 at 995.253 kb on + strand, within IAI47_04720 at 995.254 kb on - strand, within IAI47_04720 at 995.259 kb on + strand, within IAI47_04720 at 995.260 kb on - strand, within IAI47_04720 at 995.260 kb on - strand, within IAI47_04720 at 995.290 kb on + strand, within IAI47_04720 at 995.317 kb on + strand, within IAI47_04720 at 995.322 kb on + strand, within IAI47_04720 at 995.325 kb on - strand, within IAI47_04720
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 992,640 - IAI47_04700 0.77 -0.5 992,644 + IAI47_04700 0.77 +0.3 992,765 - -0.3 992,829 - +0.4 992,829 - +0.1 992,829 - -2.6 992,831 - -0.1 992,869 - -1.7 993,053 - IAI47_04705 0.73 -1.5 993,054 + IAI47_04705 0.73 +1.3 993,057 - IAI47_04705 0.74 -0.3 993,256 - IAI47_04710 0.33 +0.6 993,260 + IAI47_04710 0.34 -0.5 993,295 - IAI47_04710 0.45 +1.8 993,316 + IAI47_04710 0.51 -0.1 993,320 + IAI47_04710 0.52 +2.5 993,321 - IAI47_04710 0.53 -1.2 993,321 - IAI47_04710 0.53 +0.5 993,323 + IAI47_04710 0.53 -1.0 993,323 + IAI47_04710 0.53 +1.2 993,323 + IAI47_04710 0.53 +1.4 993,324 - IAI47_04710 0.54 -1.3 993,327 - IAI47_04710 0.54 +0.2 993,375 + IAI47_04710 0.69 -0.9 993,489 + +1.1 993,522 - +0.6 993,534 - -1.2 993,586 + -0.8 993,587 - +1.1 993,587 - +1.0 993,595 - +0.7 993,619 - -0.3 993,671 + -0.9 993,671 + +0.9 993,672 - -0.3 993,721 + IAI47_04715 0.12 -0.7 993,754 + IAI47_04715 0.17 -1.0 993,755 - IAI47_04715 0.17 -1.5 993,755 - IAI47_04715 0.17 -0.5 993,755 - IAI47_04715 0.17 -1.8 993,758 + IAI47_04715 0.17 -0.6 993,759 - IAI47_04715 0.18 -0.8 993,759 - IAI47_04715 0.18 -0.7 993,791 - IAI47_04715 0.22 -0.5 993,884 + IAI47_04715 0.36 -0.7 993,884 + IAI47_04715 0.36 -1.8 993,885 - IAI47_04715 0.36 -0.8 993,885 - IAI47_04715 0.36 -1.0 993,885 - IAI47_04715 0.36 -0.0 993,906 - IAI47_04715 0.39 -1.8 993,906 - IAI47_04715 0.39 -0.4 993,906 - IAI47_04715 0.39 -0.5 993,906 - IAI47_04715 0.39 -2.0 993,927 - IAI47_04715 0.42 +2.0 993,927 - IAI47_04715 0.42 -0.8 993,933 + IAI47_04715 0.43 -1.0 993,934 - IAI47_04715 0.43 -1.0 993,934 - IAI47_04715 0.43 +1.1 993,934 - IAI47_04715 0.43 -0.6 993,945 + IAI47_04715 0.44 -2.5 993,998 - IAI47_04715 0.52 -2.5 994,024 - IAI47_04715 0.56 +1.0 994,046 + IAI47_04715 0.59 -0.8 994,047 - IAI47_04715 0.59 -0.6 994,087 + IAI47_04715 0.65 +0.5 994,087 + IAI47_04715 0.65 -1.4 994,088 - IAI47_04715 0.65 -0.9 994,088 - IAI47_04715 0.65 -1.6 994,106 + IAI47_04715 0.68 +1.0 994,106 + IAI47_04715 0.68 +0.4 994,106 + IAI47_04715 0.68 -1.0 994,106 + IAI47_04715 0.68 -0.2 994,106 + IAI47_04715 0.68 -2.2 994,106 + IAI47_04715 0.68 +2.1 994,106 + IAI47_04715 0.68 -0.3 994,107 - IAI47_04715 0.68 +0.1 994,107 - IAI47_04715 0.68 +0.4 994,107 - IAI47_04715 0.68 +0.0 994,119 + IAI47_04715 0.70 +0.2 994,119 + IAI47_04715 0.70 -0.3 994,119 + IAI47_04715 0.70 +1.2 994,119 + IAI47_04715 0.70 -1.4 994,120 - IAI47_04715 0.70 -2.2 994,121 + IAI47_04715 0.70 -0.2 994,121 + IAI47_04715 0.70 -0.8 994,121 + IAI47_04715 0.70 -0.3 994,121 + IAI47_04715 0.70 +0.5 994,122 - IAI47_04715 0.70 +0.6 994,122 - IAI47_04715 0.70 -1.1 994,122 - IAI47_04715 0.70 +0.2 994,122 - IAI47_04715 0.70 -0.8 994,126 + IAI47_04715 0.71 -0.4 994,126 + IAI47_04715 0.71 -1.9 994,126 + IAI47_04715 0.71 -0.0 994,126 + IAI47_04715 0.71 -0.8 994,126 + IAI47_04715 0.71 -0.5 994,126 + IAI47_04715 0.71 -1.8 994,127 - IAI47_04715 0.71 -0.6 994,127 - IAI47_04715 0.71 -0.9 994,132 + IAI47_04715 0.72 -1.1 994,132 + IAI47_04715 0.72 -1.9 994,132 + IAI47_04715 0.72 +0.0 994,132 + IAI47_04715 0.72 -1.5 994,132 + IAI47_04715 0.72 -0.3 994,133 - IAI47_04715 0.72 -1.3 994,133 - IAI47_04715 0.72 -1.0 994,133 - IAI47_04715 0.72 -0.3 994,133 - IAI47_04715 0.72 -1.1 994,133 - IAI47_04715 0.72 +0.4 994,137 - IAI47_04715 0.72 -0.7 994,137 - IAI47_04715 0.72 +1.0 994,163 + IAI47_04715 0.76 -2.6 994,164 - IAI47_04715 0.76 -0.7 994,164 - IAI47_04715 0.76 -0.7 994,164 - IAI47_04715 0.76 -0.4 994,189 + IAI47_04715 0.80 -1.0 994,279 + -1.0 994,279 + -0.0 994,280 - -1.1 994,280 - -0.7 994,297 + +1.7 994,298 - +0.2 994,300 + +0.5 994,310 - -1.8 994,310 - -0.7 994,395 + -0.6 994,395 + +0.5 994,395 + -0.2 994,395 + +0.3 994,395 + +0.3 994,396 - -0.0 994,396 - +0.2 994,396 - -0.7 994,416 + +1.1 994,416 + -0.5 994,416 + -2.4 994,417 - -0.2 994,417 - -1.3 994,560 - -0.3 994,587 + -0.4 994,587 + -0.1 994,587 + -1.7 994,587 + -0.5 994,588 - -1.0 994,588 - -0.0 994,588 - +0.1 994,603 - -0.5 994,639 - -0.9 994,656 - +1.1 994,667 - -0.5 994,678 - -0.7 994,682 + -1.0 994,702 + -1.1 994,702 + -0.6 994,703 - -0.5 994,765 + -0.0 994,765 + -1.4 994,765 + -0.3 994,765 + +0.8 994,765 + +1.1 994,765 + -2.3 994,765 + -0.2 994,766 - +0.3 994,766 - -1.4 994,766 - +0.0 994,768 + +0.3 994,768 + -0.4 994,768 + -0.6 994,768 + +1.2 994,768 + -0.8 994,768 + -1.8 994,768 + -1.6 994,769 - +1.3 994,769 - -1.0 994,769 - -0.3 994,769 - -1.5 994,769 - -0.6 994,825 + -0.1 994,825 + -0.9 994,831 + -1.1 994,831 + -2.0 994,831 + -2.2 994,832 - -0.7 994,842 + -1.7 994,842 + +0.1 994,842 + -0.2 994,842 + +0.2 994,842 + +0.0 994,843 - -0.5 994,845 + -0.6 994,845 + +0.5 994,845 + +0.2 994,846 - -0.9 994,846 - +1.3 994,846 - -1.0 994,846 - -0.0 994,855 + +0.6 994,855 + -0.7 994,855 + +0.4 994,855 + +1.4 994,855 + -1.2 994,855 + +2.0 994,855 + +0.7 994,856 - -1.4 994,856 - -1.4 994,856 - -1.0 994,856 - -0.8 994,856 - -1.2 994,861 + +0.8 994,862 - -1.8 994,896 - +0.7 994,896 - -0.6 994,936 + +0.5 994,936 + +0.4 994,936 + -0.2 994,936 + -0.5 994,936 + -0.2 994,936 + -0.8 994,937 - -0.8 994,937 - -0.0 994,937 - -0.5 994,937 - -1.5 994,937 - +0.0 994,949 + +0.4 994,949 + +0.2 994,950 - +0.3 994,975 + +0.4 995,024 + +0.1 995,025 - +2.0 995,033 + +0.0 995,033 + -0.3 995,034 - -0.2 995,034 - -0.4 995,062 - +0.9 995,062 - -1.6 995,082 - -1.5 995,082 - -0.8 995,085 + +0.2 995,085 + +0.6 995,086 - -2.2 995,127 + +0.6 995,127 + +0.7 995,131 + +1.5 995,131 + -0.6 995,132 - -0.4 995,132 - -1.5 995,132 - -2.7 995,133 + +1.8 995,133 + -1.4 995,133 + +1.5 995,133 + +3.3 995,133 + +0.4 995,133 + +1.5 995,134 - -1.0 995,134 - -1.4 995,134 - -0.4 995,147 - -0.1 995,194 + +2.4 995,194 + +1.9 995,195 - -0.5 995,201 + IAI47_04720 0.10 +0.2 995,202 - IAI47_04720 0.10 -0.3 995,214 + IAI47_04720 0.12 +1.5 995,217 + IAI47_04720 0.12 +3.0 995,217 + IAI47_04720 0.12 -0.7 995,251 + IAI47_04720 0.16 +0.2 995,251 + IAI47_04720 0.16 -1.5 995,251 + IAI47_04720 0.16 +0.6 995,253 + IAI47_04720 0.16 -0.7 995,253 + IAI47_04720 0.16 +0.2 995,254 - IAI47_04720 0.16 -1.4 995,259 + IAI47_04720 0.16 +0.8 995,260 - IAI47_04720 0.17 -0.5 995,260 - IAI47_04720 0.17 -2.5 995,290 + IAI47_04720 0.20 +1.0 995,317 + IAI47_04720 0.23 +1.4 995,322 + IAI47_04720 0.23 +0.7 995,325 - IAI47_04720 0.24 -1.2
Or see this region's nucleotide sequence