Strain Fitness in Pantoea sp. MT58 around IAI47_02810

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02805 and IAI47_02810 overlap by 4 nucleotidesIAI47_02810 and IAI47_02815 are separated by 104 nucleotides IAI47_02805: IAI47_02805 - DgaE family pyridoxal phosphate-dependent ammonia lyase, at 579,442 to 580,563 _02805 IAI47_02810: IAI47_02810 - KDGP aldolase family protein, at 580,560 to 581,303 _02810 IAI47_02815: IAI47_02815 - BglG family transcription antiterminator, at 581,408 to 583,318 _02815 Position (kb) 580 581 582Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 579.568 kb on + strand, within IAI47_02805at 579.568 kb on + strand, within IAI47_02805at 579.569 kb on - strand, within IAI47_02805at 579.594 kb on + strand, within IAI47_02805at 579.595 kb on - strand, within IAI47_02805at 579.595 kb on - strand, within IAI47_02805at 579.595 kb on - strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.607 kb on + strand, within IAI47_02805at 579.608 kb on - strand, within IAI47_02805at 579.608 kb on - strand, within IAI47_02805at 579.608 kb on - strandat 579.608 kb on - strand, within IAI47_02805at 579.608 kb on - strand, within IAI47_02805at 579.608 kb on - strand, within IAI47_02805at 579.608 kb on - strand, within IAI47_02805at 579.608 kb on - strand, within IAI47_02805at 579.608 kb on - strand, within IAI47_02805at 579.608 kb on - strand, within IAI47_02805at 579.609 kb on + strand, within IAI47_02805at 579.610 kb on - strand, within IAI47_02805at 579.695 kb on + strand, within IAI47_02805at 579.695 kb on + strand, within IAI47_02805at 579.787 kb on + strand, within IAI47_02805at 579.787 kb on + strand, within IAI47_02805at 579.787 kb on + strand, within IAI47_02805at 579.787 kb on + strand, within IAI47_02805at 579.788 kb on - strand, within IAI47_02805at 579.788 kb on - strand, within IAI47_02805at 579.848 kb on - strand, within IAI47_02805at 579.913 kb on + strand, within IAI47_02805at 579.913 kb on + strand, within IAI47_02805at 579.913 kb on + strand, within IAI47_02805at 579.914 kb on - strand, within IAI47_02805at 579.914 kb on - strand, within IAI47_02805at 579.935 kb on + strand, within IAI47_02805at 579.936 kb on - strand, within IAI47_02805at 580.036 kb on + strand, within IAI47_02805at 580.036 kb on + strand, within IAI47_02805at 580.036 kb on + strand, within IAI47_02805at 580.036 kb on + strand, within IAI47_02805at 580.036 kb on + strand, within IAI47_02805at 580.036 kb on + strand, within IAI47_02805at 580.036 kb on + strand, within IAI47_02805at 580.037 kb on - strand, within IAI47_02805at 580.037 kb on - strand, within IAI47_02805at 580.037 kb on - strand, within IAI47_02805at 580.040 kb on - strand, within IAI47_02805at 580.066 kb on + strand, within IAI47_02805at 580.066 kb on + strand, within IAI47_02805at 580.066 kb on + strand, within IAI47_02805at 580.066 kb on + strand, within IAI47_02805at 580.067 kb on - strand, within IAI47_02805at 580.067 kb on - strand, within IAI47_02805at 580.067 kb on - strand, within IAI47_02805at 580.067 kb on - strand, within IAI47_02805at 580.067 kb on - strand, within IAI47_02805at 580.067 kb on - strand, within IAI47_02805at 580.126 kb on + strand, within IAI47_02805at 580.126 kb on + strand, within IAI47_02805at 580.126 kb on + strand, within IAI47_02805at 580.126 kb on + strand, within IAI47_02805at 580.126 kb on + strand, within IAI47_02805at 580.127 kb on - strand, within IAI47_02805at 580.127 kb on - strand, within IAI47_02805at 580.222 kb on + strand, within IAI47_02805at 580.222 kb on + strand, within IAI47_02805at 580.222 kb on + strand, within IAI47_02805at 580.222 kb on + strand, within IAI47_02805at 580.222 kb on + strand, within IAI47_02805at 580.222 kb on + strand, within IAI47_02805at 580.278 kb on + strand, within IAI47_02805at 580.279 kb on - strand, within IAI47_02805at 580.290 kb on + strand, within IAI47_02805at 580.290 kb on + strand, within IAI47_02805at 580.291 kb on - strand, within IAI47_02805at 580.291 kb on - strand, within IAI47_02805at 580.291 kb on - strand, within IAI47_02805at 580.291 kb on - strand, within IAI47_02805at 580.430 kb on + strand, within IAI47_02805at 580.430 kb on + strand, within IAI47_02805at 580.430 kb on + strand, within IAI47_02805at 580.430 kb on + strand, within IAI47_02805at 580.430 kb on + strand, within IAI47_02805at 580.430 kb on + strand, within IAI47_02805at 580.431 kb on - strand, within IAI47_02805at 580.431 kb on - strand, within IAI47_02805at 580.431 kb on - strand, within IAI47_02805at 580.431 kb on - strand, within IAI47_02805at 580.438 kb on + strand, within IAI47_02805at 580.438 kb on + strand, within IAI47_02805at 580.439 kb on - strand, within IAI47_02805at 580.450 kb on + strand, within IAI47_02805at 580.450 kb on + strand, within IAI47_02805at 580.451 kb on - strandat 580.515 kb on + strandat 580.541 kb on + strandat 580.542 kb on - strandat 580.574 kb on + strandat 580.575 kb on - strandat 580.637 kb on + strand, within IAI47_02810at 580.638 kb on - strand, within IAI47_02810at 580.689 kb on + strand, within IAI47_02810at 580.690 kb on - strand, within IAI47_02810at 580.718 kb on + strand, within IAI47_02810at 580.718 kb on + strand, within IAI47_02810at 580.718 kb on + strand, within IAI47_02810at 580.718 kb on + strand, within IAI47_02810at 580.718 kb on + strand, within IAI47_02810at 580.718 kb on + strand, within IAI47_02810at 580.718 kb on + strand, within IAI47_02810at 580.718 kb on + strand, within IAI47_02810at 580.719 kb on - strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.728 kb on + strand, within IAI47_02810at 580.729 kb on - strand, within IAI47_02810at 580.729 kb on - strand, within IAI47_02810at 580.729 kb on - strand, within IAI47_02810at 580.729 kb on - strand, within IAI47_02810at 580.729 kb on - strand, within IAI47_02810at 580.892 kb on + strand, within IAI47_02810at 580.892 kb on + strand, within IAI47_02810at 580.892 kb on + strand, within IAI47_02810at 580.892 kb on + strand, within IAI47_02810at 580.893 kb on - strand, within IAI47_02810at 580.893 kb on - strand, within IAI47_02810at 580.893 kb on - strand, within IAI47_02810at 580.893 kb on - strand, within IAI47_02810at 581.018 kb on + strand, within IAI47_02810at 581.211 kb on + strand, within IAI47_02810at 581.211 kb on + strand, within IAI47_02810at 581.211 kb on + strand, within IAI47_02810at 581.212 kb on - strand, within IAI47_02810at 581.212 kb on - strand, within IAI47_02810at 581.212 kb on - strand, within IAI47_02810at 581.212 kb on - strand, within IAI47_02810at 581.212 kb on - strand, within IAI47_02810at 581.282 kb on + strandat 581.282 kb on + strandat 581.282 kb on + strandat 581.283 kb on - strandat 581.291 kb on - strandat 581.365 kb on + strandat 581.365 kb on + strandat 581.400 kb on + strandat 581.525 kb on - strandat 581.527 kb on + strandat 581.527 kb on + strandat 581.527 kb on + strandat 581.528 kb on - strandat 581.569 kb on + strandat 581.570 kb on - strandat 581.591 kb on + strandat 581.641 kb on + strand, within IAI47_02815at 581.642 kb on - strand, within IAI47_02815at 581.668 kb on + strand, within IAI47_02815at 581.669 kb on - strand, within IAI47_02815at 581.691 kb on - strand, within IAI47_02815at 581.691 kb on - strand, within IAI47_02815at 581.691 kb on - strand, within IAI47_02815at 581.720 kb on + strand, within IAI47_02815at 581.721 kb on - strand, within IAI47_02815at 581.785 kb on + strand, within IAI47_02815at 581.785 kb on + strand, within IAI47_02815at 581.836 kb on + strand, within IAI47_02815at 581.847 kb on - strand, within IAI47_02815at 581.847 kb on - strand, within IAI47_02815at 581.859 kb on + strand, within IAI47_02815at 581.859 kb on + strand, within IAI47_02815at 581.859 kb on + strand, within IAI47_02815at 581.860 kb on - strand, within IAI47_02815at 581.860 kb on - strand, within IAI47_02815at 581.860 kb on - strand, within IAI47_02815at 581.860 kb on - strand, within IAI47_02815at 581.860 kb on - strand, within IAI47_02815at 581.860 kb on - strand, within IAI47_02815at 581.860 kb on - strand, within IAI47_02815at 581.904 kb on + strand, within IAI47_02815at 581.904 kb on + strand, within IAI47_02815at 581.905 kb on - strand, within IAI47_02815at 581.947 kb on + strand, within IAI47_02815at 581.948 kb on - strand, within IAI47_02815at 582.047 kb on + strand, within IAI47_02815at 582.059 kb on + strand, within IAI47_02815at 582.059 kb on + strand, within IAI47_02815at 582.059 kb on + strand, within IAI47_02815at 582.096 kb on - strand, within IAI47_02815at 582.163 kb on + strand, within IAI47_02815at 582.164 kb on - strand, within IAI47_02815at 582.164 kb on - strand, within IAI47_02815at 582.164 kb on - strand, within IAI47_02815at 582.164 kb on - strand, within IAI47_02815at 582.164 kb on - strand, within IAI47_02815

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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579,568 + IAI47_02805 0.11 -1.1
579,568 + IAI47_02805 0.11 -0.7
579,569 - IAI47_02805 0.11 +0.5
579,594 + IAI47_02805 0.14 -0.6
579,595 - IAI47_02805 0.14 -0.3
579,595 - IAI47_02805 0.14 -0.1
579,595 - IAI47_02805 0.14 +1.2
579,607 + IAI47_02805 0.15 +0.0
579,607 + IAI47_02805 0.15 +0.6
579,607 + IAI47_02805 0.15 +0.1
579,607 + IAI47_02805 0.15 -0.9
579,607 + IAI47_02805 0.15 +0.7
579,607 + IAI47_02805 0.15 -0.2
579,607 + IAI47_02805 0.15 +0.2
579,607 + IAI47_02805 0.15 -0.1
579,607 + IAI47_02805 0.15 -1.2
579,607 + IAI47_02805 0.15 -0.5
579,608 - IAI47_02805 0.15 -3.7
579,608 - IAI47_02805 0.15 -1.3
579,608 - +2.3
579,608 - IAI47_02805 0.15 +1.4
579,608 - IAI47_02805 0.15 -1.1
579,608 - IAI47_02805 0.15 +0.6
579,608 - IAI47_02805 0.15 -0.5
579,608 - IAI47_02805 0.15 +0.4
579,608 - IAI47_02805 0.15 +0.4
579,608 - IAI47_02805 0.15 -0.2
579,609 + IAI47_02805 0.15 -1.1
579,610 - IAI47_02805 0.15 +0.1
579,695 + IAI47_02805 0.23 +0.9
579,695 + IAI47_02805 0.23 +0.3
579,787 + IAI47_02805 0.31 -0.8
579,787 + IAI47_02805 0.31 +0.1
579,787 + IAI47_02805 0.31 +2.0
579,787 + IAI47_02805 0.31 -0.3
579,788 - IAI47_02805 0.31 -0.2
579,788 - IAI47_02805 0.31 +0.2
579,848 - IAI47_02805 0.36 -0.4
579,913 + IAI47_02805 0.42 +0.3
579,913 + IAI47_02805 0.42 +0.3
579,913 + IAI47_02805 0.42 -0.8
579,914 - IAI47_02805 0.42 +1.0
579,914 - IAI47_02805 0.42 -1.3
579,935 + IAI47_02805 0.44 +2.4
579,936 - IAI47_02805 0.44 -0.8
580,036 + IAI47_02805 0.53 -0.8
580,036 + IAI47_02805 0.53 +0.8
580,036 + IAI47_02805 0.53 -0.1
580,036 + IAI47_02805 0.53 +1.0
580,036 + IAI47_02805 0.53 +0.6
580,036 + IAI47_02805 0.53 +0.4
580,036 + IAI47_02805 0.53 -0.0
580,037 - IAI47_02805 0.53 +1.0
580,037 - IAI47_02805 0.53 +0.3
580,037 - IAI47_02805 0.53 -0.5
580,040 - IAI47_02805 0.53 +0.3
580,066 + IAI47_02805 0.56 -0.7
580,066 + IAI47_02805 0.56 -0.4
580,066 + IAI47_02805 0.56 +1.0
580,066 + IAI47_02805 0.56 -1.7
580,067 - IAI47_02805 0.56 -1.2
580,067 - IAI47_02805 0.56 -0.9
580,067 - IAI47_02805 0.56 -0.8
580,067 - IAI47_02805 0.56 -1.0
580,067 - IAI47_02805 0.56 -1.4
580,067 - IAI47_02805 0.56 -0.6
580,126 + IAI47_02805 0.61 +0.6
580,126 + IAI47_02805 0.61 -1.8
580,126 + IAI47_02805 0.61 +2.0
580,126 + IAI47_02805 0.61 -1.0
580,126 + IAI47_02805 0.61 +1.4
580,127 - IAI47_02805 0.61 -1.7
580,127 - IAI47_02805 0.61 -0.6
580,222 + IAI47_02805 0.70 +0.2
580,222 + IAI47_02805 0.70 +1.0
580,222 + IAI47_02805 0.70 +0.5
580,222 + IAI47_02805 0.70 -0.1
580,222 + IAI47_02805 0.70 -0.3
580,222 + IAI47_02805 0.70 -0.1
580,278 + IAI47_02805 0.75 +0.4
580,279 - IAI47_02805 0.75 -1.4
580,290 + IAI47_02805 0.76 +0.7
580,290 + IAI47_02805 0.76 +0.3
580,291 - IAI47_02805 0.76 -1.5
580,291 - IAI47_02805 0.76 -0.4
580,291 - IAI47_02805 0.76 -1.3
580,291 - IAI47_02805 0.76 -0.7
580,430 + IAI47_02805 0.88 -1.7
580,430 + IAI47_02805 0.88 +0.1
580,430 + IAI47_02805 0.88 -0.5
580,430 + IAI47_02805 0.88 +1.8
580,430 + IAI47_02805 0.88 -0.1
580,430 + IAI47_02805 0.88 -1.6
580,431 - IAI47_02805 0.88 -0.7
580,431 - IAI47_02805 0.88 -1.3
580,431 - IAI47_02805 0.88 -0.9
580,431 - IAI47_02805 0.88 +0.6
580,438 + IAI47_02805 0.89 +2.1
580,438 + IAI47_02805 0.89 -2.1
580,439 - IAI47_02805 0.89 -0.1
580,450 + IAI47_02805 0.90 -0.9
580,450 + IAI47_02805 0.90 +0.0
580,451 - +0.2
580,515 + -0.8
580,541 + +1.0
580,542 - -1.1
580,574 + +2.8
580,575 - +0.7
580,637 + IAI47_02810 0.10 +0.2
580,638 - IAI47_02810 0.10 -1.0
580,689 + IAI47_02810 0.17 -0.6
580,690 - IAI47_02810 0.17 +0.5
580,718 + IAI47_02810 0.21 -0.7
580,718 + IAI47_02810 0.21 +1.8
580,718 + IAI47_02810 0.21 -0.4
580,718 + IAI47_02810 0.21 -2.0
580,718 + IAI47_02810 0.21 +0.5
580,718 + IAI47_02810 0.21 +1.5
580,718 + IAI47_02810 0.21 -0.5
580,718 + IAI47_02810 0.21 -2.0
580,719 - IAI47_02810 0.21 +0.1
580,728 + IAI47_02810 0.23 -0.3
580,728 + IAI47_02810 0.23 -0.5
580,728 + IAI47_02810 0.23 -3.0
580,728 + IAI47_02810 0.23 +0.7
580,728 + IAI47_02810 0.23 -0.2
580,728 + IAI47_02810 0.23 +2.9
580,728 + IAI47_02810 0.23 -0.6
580,728 + IAI47_02810 0.23 -1.6
580,728 + IAI47_02810 0.23 +1.3
580,729 - IAI47_02810 0.23 +0.8
580,729 - IAI47_02810 0.23 -1.6
580,729 - IAI47_02810 0.23 -0.8
580,729 - IAI47_02810 0.23 -0.0
580,729 - IAI47_02810 0.23 -1.6
580,892 + IAI47_02810 0.45 +1.0
580,892 + IAI47_02810 0.45 -0.5
580,892 + IAI47_02810 0.45 +1.3
580,892 + IAI47_02810 0.45 +0.7
580,893 - IAI47_02810 0.45 -3.0
580,893 - IAI47_02810 0.45 +1.3
580,893 - IAI47_02810 0.45 -0.4
580,893 - IAI47_02810 0.45 -1.4
581,018 + IAI47_02810 0.62 +1.9
581,211 + IAI47_02810 0.88 +0.4
581,211 + IAI47_02810 0.88 -2.1
581,211 + IAI47_02810 0.88 -0.3
581,212 - IAI47_02810 0.88 -2.1
581,212 - IAI47_02810 0.88 -0.6
581,212 - IAI47_02810 0.88 -0.7
581,212 - IAI47_02810 0.88 -0.4
581,212 - IAI47_02810 0.88 -0.7
581,282 + +0.3
581,282 + -1.4
581,282 + -0.7
581,283 - -1.3
581,291 - -0.7
581,365 + -0.3
581,365 + -0.8
581,400 + +0.8
581,525 - +0.9
581,527 + -0.0
581,527 + -0.7
581,527 + -1.3
581,528 - -1.0
581,569 + -3.2
581,570 - +0.5
581,591 + +0.9
581,641 + IAI47_02815 0.12 -1.2
581,642 - IAI47_02815 0.12 -0.7
581,668 + IAI47_02815 0.14 -1.6
581,669 - IAI47_02815 0.14 -0.3
581,691 - IAI47_02815 0.15 -0.3
581,691 - IAI47_02815 0.15 -1.2
581,691 - IAI47_02815 0.15 -1.9
581,720 + IAI47_02815 0.16 +0.3
581,721 - IAI47_02815 0.16 +0.7
581,785 + IAI47_02815 0.20 +0.0
581,785 + IAI47_02815 0.20 +0.3
581,836 + IAI47_02815 0.22 +0.7
581,847 - IAI47_02815 0.23 +0.1
581,847 - IAI47_02815 0.23 -2.1
581,859 + IAI47_02815 0.24 -0.8
581,859 + IAI47_02815 0.24 -0.1
581,859 + IAI47_02815 0.24 -1.7
581,860 - IAI47_02815 0.24 +0.2
581,860 - IAI47_02815 0.24 -0.2
581,860 - IAI47_02815 0.24 -0.1
581,860 - IAI47_02815 0.24 +1.5
581,860 - IAI47_02815 0.24 -2.8
581,860 - IAI47_02815 0.24 -0.1
581,860 - IAI47_02815 0.24 -1.0
581,904 + IAI47_02815 0.26 -0.3
581,904 + IAI47_02815 0.26 -1.0
581,905 - IAI47_02815 0.26 +0.2
581,947 + IAI47_02815 0.28 -2.1
581,948 - IAI47_02815 0.28 -2.9
582,047 + IAI47_02815 0.33 -0.1
582,059 + IAI47_02815 0.34 -0.4
582,059 + IAI47_02815 0.34 +1.7
582,059 + IAI47_02815 0.34 -1.5
582,096 - IAI47_02815 0.36 -2.9
582,163 + IAI47_02815 0.40 -0.3
582,164 - IAI47_02815 0.40 +1.0
582,164 - IAI47_02815 0.40 -2.1
582,164 - IAI47_02815 0.40 -0.4
582,164 - IAI47_02815 0.40 -0.6
582,164 - IAI47_02815 0.40 -0.6

Or see this region's nucleotide sequence