Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02805 and IAI47_02810 overlap by 4 nucleotides IAI47_02810 and IAI47_02815 are separated by 104 nucleotides
IAI47_02805: IAI47_02805 - DgaE family pyridoxal phosphate-dependent ammonia lyase, at 579,442 to 580,563
_02805
IAI47_02810: IAI47_02810 - KDGP aldolase family protein, at 580,560 to 581,303
_02810
IAI47_02815: IAI47_02815 - BglG family transcription antiterminator, at 581,408 to 583,318
_02815
Position (kb)
580
581
582 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 579.568 kb on + strand, within IAI47_02805 at 579.568 kb on + strand, within IAI47_02805 at 579.569 kb on - strand, within IAI47_02805 at 579.594 kb on + strand, within IAI47_02805 at 579.595 kb on - strand, within IAI47_02805 at 579.595 kb on - strand, within IAI47_02805 at 579.595 kb on - strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.607 kb on + strand, within IAI47_02805 at 579.608 kb on - strand, within IAI47_02805 at 579.608 kb on - strand, within IAI47_02805 at 579.608 kb on - strand at 579.608 kb on - strand, within IAI47_02805 at 579.608 kb on - strand, within IAI47_02805 at 579.608 kb on - strand, within IAI47_02805 at 579.608 kb on - strand, within IAI47_02805 at 579.608 kb on - strand, within IAI47_02805 at 579.608 kb on - strand, within IAI47_02805 at 579.608 kb on - strand, within IAI47_02805 at 579.609 kb on + strand, within IAI47_02805 at 579.610 kb on - strand, within IAI47_02805 at 579.695 kb on + strand, within IAI47_02805 at 579.695 kb on + strand, within IAI47_02805 at 579.787 kb on + strand, within IAI47_02805 at 579.787 kb on + strand, within IAI47_02805 at 579.787 kb on + strand, within IAI47_02805 at 579.787 kb on + strand, within IAI47_02805 at 579.788 kb on - strand, within IAI47_02805 at 579.788 kb on - strand, within IAI47_02805 at 579.848 kb on - strand, within IAI47_02805 at 579.913 kb on + strand, within IAI47_02805 at 579.913 kb on + strand, within IAI47_02805 at 579.913 kb on + strand, within IAI47_02805 at 579.914 kb on - strand, within IAI47_02805 at 579.914 kb on - strand, within IAI47_02805 at 579.935 kb on + strand, within IAI47_02805 at 579.936 kb on - strand, within IAI47_02805 at 580.036 kb on + strand, within IAI47_02805 at 580.036 kb on + strand, within IAI47_02805 at 580.036 kb on + strand, within IAI47_02805 at 580.036 kb on + strand, within IAI47_02805 at 580.036 kb on + strand, within IAI47_02805 at 580.036 kb on + strand, within IAI47_02805 at 580.036 kb on + strand, within IAI47_02805 at 580.037 kb on - strand, within IAI47_02805 at 580.037 kb on - strand, within IAI47_02805 at 580.037 kb on - strand, within IAI47_02805 at 580.040 kb on - strand, within IAI47_02805 at 580.066 kb on + strand, within IAI47_02805 at 580.066 kb on + strand, within IAI47_02805 at 580.066 kb on + strand, within IAI47_02805 at 580.066 kb on + strand, within IAI47_02805 at 580.067 kb on - strand, within IAI47_02805 at 580.067 kb on - strand, within IAI47_02805 at 580.067 kb on - strand, within IAI47_02805 at 580.067 kb on - strand, within IAI47_02805 at 580.067 kb on - strand, within IAI47_02805 at 580.067 kb on - strand, within IAI47_02805 at 580.126 kb on + strand, within IAI47_02805 at 580.126 kb on + strand, within IAI47_02805 at 580.126 kb on + strand, within IAI47_02805 at 580.126 kb on + strand, within IAI47_02805 at 580.126 kb on + strand, within IAI47_02805 at 580.127 kb on - strand, within IAI47_02805 at 580.127 kb on - strand, within IAI47_02805 at 580.222 kb on + strand, within IAI47_02805 at 580.222 kb on + strand, within IAI47_02805 at 580.222 kb on + strand, within IAI47_02805 at 580.222 kb on + strand, within IAI47_02805 at 580.222 kb on + strand, within IAI47_02805 at 580.222 kb on + strand, within IAI47_02805 at 580.278 kb on + strand, within IAI47_02805 at 580.279 kb on - strand, within IAI47_02805 at 580.290 kb on + strand, within IAI47_02805 at 580.290 kb on + strand, within IAI47_02805 at 580.291 kb on - strand, within IAI47_02805 at 580.291 kb on - strand, within IAI47_02805 at 580.291 kb on - strand, within IAI47_02805 at 580.291 kb on - strand, within IAI47_02805 at 580.430 kb on + strand, within IAI47_02805 at 580.430 kb on + strand, within IAI47_02805 at 580.430 kb on + strand, within IAI47_02805 at 580.430 kb on + strand, within IAI47_02805 at 580.430 kb on + strand, within IAI47_02805 at 580.430 kb on + strand, within IAI47_02805 at 580.431 kb on - strand, within IAI47_02805 at 580.431 kb on - strand, within IAI47_02805 at 580.431 kb on - strand, within IAI47_02805 at 580.431 kb on - strand, within IAI47_02805 at 580.438 kb on + strand, within IAI47_02805 at 580.438 kb on + strand, within IAI47_02805 at 580.439 kb on - strand, within IAI47_02805 at 580.450 kb on + strand, within IAI47_02805 at 580.450 kb on + strand, within IAI47_02805 at 580.451 kb on - strand at 580.515 kb on + strand at 580.541 kb on + strand at 580.542 kb on - strand at 580.574 kb on + strand at 580.575 kb on - strand at 580.637 kb on + strand, within IAI47_02810 at 580.638 kb on - strand, within IAI47_02810 at 580.689 kb on + strand, within IAI47_02810 at 580.690 kb on - strand, within IAI47_02810 at 580.718 kb on + strand, within IAI47_02810 at 580.718 kb on + strand, within IAI47_02810 at 580.718 kb on + strand, within IAI47_02810 at 580.718 kb on + strand, within IAI47_02810 at 580.718 kb on + strand, within IAI47_02810 at 580.718 kb on + strand, within IAI47_02810 at 580.718 kb on + strand, within IAI47_02810 at 580.718 kb on + strand, within IAI47_02810 at 580.719 kb on - strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.728 kb on + strand, within IAI47_02810 at 580.729 kb on - strand, within IAI47_02810 at 580.729 kb on - strand, within IAI47_02810 at 580.729 kb on - strand, within IAI47_02810 at 580.729 kb on - strand, within IAI47_02810 at 580.729 kb on - strand, within IAI47_02810 at 580.892 kb on + strand, within IAI47_02810 at 580.892 kb on + strand, within IAI47_02810 at 580.892 kb on + strand, within IAI47_02810 at 580.892 kb on + strand, within IAI47_02810 at 580.893 kb on - strand, within IAI47_02810 at 580.893 kb on - strand, within IAI47_02810 at 580.893 kb on - strand, within IAI47_02810 at 580.893 kb on - strand, within IAI47_02810 at 581.018 kb on + strand, within IAI47_02810 at 581.211 kb on + strand, within IAI47_02810 at 581.211 kb on + strand, within IAI47_02810 at 581.211 kb on + strand, within IAI47_02810 at 581.212 kb on - strand, within IAI47_02810 at 581.212 kb on - strand, within IAI47_02810 at 581.212 kb on - strand, within IAI47_02810 at 581.212 kb on - strand, within IAI47_02810 at 581.212 kb on - strand, within IAI47_02810 at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.283 kb on - strand at 581.291 kb on - strand at 581.365 kb on + strand at 581.365 kb on + strand at 581.400 kb on + strand at 581.525 kb on - strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.528 kb on - strand at 581.569 kb on + strand at 581.570 kb on - strand at 581.591 kb on + strand at 581.641 kb on + strand, within IAI47_02815 at 581.642 kb on - strand, within IAI47_02815 at 581.668 kb on + strand, within IAI47_02815 at 581.669 kb on - strand, within IAI47_02815 at 581.691 kb on - strand, within IAI47_02815 at 581.691 kb on - strand, within IAI47_02815 at 581.691 kb on - strand, within IAI47_02815 at 581.720 kb on + strand, within IAI47_02815 at 581.721 kb on - strand, within IAI47_02815 at 581.785 kb on + strand, within IAI47_02815 at 581.785 kb on + strand, within IAI47_02815 at 581.836 kb on + strand, within IAI47_02815 at 581.847 kb on - strand, within IAI47_02815 at 581.847 kb on - strand, within IAI47_02815 at 581.859 kb on + strand, within IAI47_02815 at 581.859 kb on + strand, within IAI47_02815 at 581.859 kb on + strand, within IAI47_02815 at 581.860 kb on - strand, within IAI47_02815 at 581.860 kb on - strand, within IAI47_02815 at 581.860 kb on - strand, within IAI47_02815 at 581.860 kb on - strand, within IAI47_02815 at 581.860 kb on - strand, within IAI47_02815 at 581.860 kb on - strand, within IAI47_02815 at 581.860 kb on - strand, within IAI47_02815 at 581.904 kb on + strand, within IAI47_02815 at 581.904 kb on + strand, within IAI47_02815 at 581.905 kb on - strand, within IAI47_02815 at 581.947 kb on + strand, within IAI47_02815 at 581.948 kb on - strand, within IAI47_02815 at 582.047 kb on + strand, within IAI47_02815 at 582.059 kb on + strand, within IAI47_02815 at 582.059 kb on + strand, within IAI47_02815 at 582.059 kb on + strand, within IAI47_02815 at 582.096 kb on - strand, within IAI47_02815 at 582.163 kb on + strand, within IAI47_02815 at 582.164 kb on - strand, within IAI47_02815 at 582.164 kb on - strand, within IAI47_02815 at 582.164 kb on - strand, within IAI47_02815 at 582.164 kb on - strand, within IAI47_02815 at 582.164 kb on - strand, within IAI47_02815
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 579,568 + IAI47_02805 0.11 -1.1 579,568 + IAI47_02805 0.11 -0.7 579,569 - IAI47_02805 0.11 +0.5 579,594 + IAI47_02805 0.14 -0.6 579,595 - IAI47_02805 0.14 -0.3 579,595 - IAI47_02805 0.14 -0.1 579,595 - IAI47_02805 0.14 +1.2 579,607 + IAI47_02805 0.15 +0.0 579,607 + IAI47_02805 0.15 +0.6 579,607 + IAI47_02805 0.15 +0.1 579,607 + IAI47_02805 0.15 -0.9 579,607 + IAI47_02805 0.15 +0.7 579,607 + IAI47_02805 0.15 -0.2 579,607 + IAI47_02805 0.15 +0.2 579,607 + IAI47_02805 0.15 -0.1 579,607 + IAI47_02805 0.15 -1.2 579,607 + IAI47_02805 0.15 -0.5 579,608 - IAI47_02805 0.15 -3.7 579,608 - IAI47_02805 0.15 -1.3 579,608 - +2.3 579,608 - IAI47_02805 0.15 +1.4 579,608 - IAI47_02805 0.15 -1.1 579,608 - IAI47_02805 0.15 +0.6 579,608 - IAI47_02805 0.15 -0.5 579,608 - IAI47_02805 0.15 +0.4 579,608 - IAI47_02805 0.15 +0.4 579,608 - IAI47_02805 0.15 -0.2 579,609 + IAI47_02805 0.15 -1.1 579,610 - IAI47_02805 0.15 +0.1 579,695 + IAI47_02805 0.23 +0.9 579,695 + IAI47_02805 0.23 +0.3 579,787 + IAI47_02805 0.31 -0.8 579,787 + IAI47_02805 0.31 +0.1 579,787 + IAI47_02805 0.31 +2.0 579,787 + IAI47_02805 0.31 -0.3 579,788 - IAI47_02805 0.31 -0.2 579,788 - IAI47_02805 0.31 +0.2 579,848 - IAI47_02805 0.36 -0.4 579,913 + IAI47_02805 0.42 +0.3 579,913 + IAI47_02805 0.42 +0.3 579,913 + IAI47_02805 0.42 -0.8 579,914 - IAI47_02805 0.42 +1.0 579,914 - IAI47_02805 0.42 -1.3 579,935 + IAI47_02805 0.44 +2.4 579,936 - IAI47_02805 0.44 -0.8 580,036 + IAI47_02805 0.53 -0.8 580,036 + IAI47_02805 0.53 +0.8 580,036 + IAI47_02805 0.53 -0.1 580,036 + IAI47_02805 0.53 +1.0 580,036 + IAI47_02805 0.53 +0.6 580,036 + IAI47_02805 0.53 +0.4 580,036 + IAI47_02805 0.53 -0.0 580,037 - IAI47_02805 0.53 +1.0 580,037 - IAI47_02805 0.53 +0.3 580,037 - IAI47_02805 0.53 -0.5 580,040 - IAI47_02805 0.53 +0.3 580,066 + IAI47_02805 0.56 -0.7 580,066 + IAI47_02805 0.56 -0.4 580,066 + IAI47_02805 0.56 +1.0 580,066 + IAI47_02805 0.56 -1.7 580,067 - IAI47_02805 0.56 -1.2 580,067 - IAI47_02805 0.56 -0.9 580,067 - IAI47_02805 0.56 -0.8 580,067 - IAI47_02805 0.56 -1.0 580,067 - IAI47_02805 0.56 -1.4 580,067 - IAI47_02805 0.56 -0.6 580,126 + IAI47_02805 0.61 +0.6 580,126 + IAI47_02805 0.61 -1.8 580,126 + IAI47_02805 0.61 +2.0 580,126 + IAI47_02805 0.61 -1.0 580,126 + IAI47_02805 0.61 +1.4 580,127 - IAI47_02805 0.61 -1.7 580,127 - IAI47_02805 0.61 -0.6 580,222 + IAI47_02805 0.70 +0.2 580,222 + IAI47_02805 0.70 +1.0 580,222 + IAI47_02805 0.70 +0.5 580,222 + IAI47_02805 0.70 -0.1 580,222 + IAI47_02805 0.70 -0.3 580,222 + IAI47_02805 0.70 -0.1 580,278 + IAI47_02805 0.75 +0.4 580,279 - IAI47_02805 0.75 -1.4 580,290 + IAI47_02805 0.76 +0.7 580,290 + IAI47_02805 0.76 +0.3 580,291 - IAI47_02805 0.76 -1.5 580,291 - IAI47_02805 0.76 -0.4 580,291 - IAI47_02805 0.76 -1.3 580,291 - IAI47_02805 0.76 -0.7 580,430 + IAI47_02805 0.88 -1.7 580,430 + IAI47_02805 0.88 +0.1 580,430 + IAI47_02805 0.88 -0.5 580,430 + IAI47_02805 0.88 +1.8 580,430 + IAI47_02805 0.88 -0.1 580,430 + IAI47_02805 0.88 -1.6 580,431 - IAI47_02805 0.88 -0.7 580,431 - IAI47_02805 0.88 -1.3 580,431 - IAI47_02805 0.88 -0.9 580,431 - IAI47_02805 0.88 +0.6 580,438 + IAI47_02805 0.89 +2.1 580,438 + IAI47_02805 0.89 -2.1 580,439 - IAI47_02805 0.89 -0.1 580,450 + IAI47_02805 0.90 -0.9 580,450 + IAI47_02805 0.90 +0.0 580,451 - +0.2 580,515 + -0.8 580,541 + +1.0 580,542 - -1.1 580,574 + +2.8 580,575 - +0.7 580,637 + IAI47_02810 0.10 +0.2 580,638 - IAI47_02810 0.10 -1.0 580,689 + IAI47_02810 0.17 -0.6 580,690 - IAI47_02810 0.17 +0.5 580,718 + IAI47_02810 0.21 -0.7 580,718 + IAI47_02810 0.21 +1.8 580,718 + IAI47_02810 0.21 -0.4 580,718 + IAI47_02810 0.21 -2.0 580,718 + IAI47_02810 0.21 +0.5 580,718 + IAI47_02810 0.21 +1.5 580,718 + IAI47_02810 0.21 -0.5 580,718 + IAI47_02810 0.21 -2.0 580,719 - IAI47_02810 0.21 +0.1 580,728 + IAI47_02810 0.23 -0.3 580,728 + IAI47_02810 0.23 -0.5 580,728 + IAI47_02810 0.23 -3.0 580,728 + IAI47_02810 0.23 +0.7 580,728 + IAI47_02810 0.23 -0.2 580,728 + IAI47_02810 0.23 +2.9 580,728 + IAI47_02810 0.23 -0.6 580,728 + IAI47_02810 0.23 -1.6 580,728 + IAI47_02810 0.23 +1.3 580,729 - IAI47_02810 0.23 +0.8 580,729 - IAI47_02810 0.23 -1.6 580,729 - IAI47_02810 0.23 -0.8 580,729 - IAI47_02810 0.23 -0.0 580,729 - IAI47_02810 0.23 -1.6 580,892 + IAI47_02810 0.45 +1.0 580,892 + IAI47_02810 0.45 -0.5 580,892 + IAI47_02810 0.45 +1.3 580,892 + IAI47_02810 0.45 +0.7 580,893 - IAI47_02810 0.45 -3.0 580,893 - IAI47_02810 0.45 +1.3 580,893 - IAI47_02810 0.45 -0.4 580,893 - IAI47_02810 0.45 -1.4 581,018 + IAI47_02810 0.62 +1.9 581,211 + IAI47_02810 0.88 +0.4 581,211 + IAI47_02810 0.88 -2.1 581,211 + IAI47_02810 0.88 -0.3 581,212 - IAI47_02810 0.88 -2.1 581,212 - IAI47_02810 0.88 -0.6 581,212 - IAI47_02810 0.88 -0.7 581,212 - IAI47_02810 0.88 -0.4 581,212 - IAI47_02810 0.88 -0.7 581,282 + +0.3 581,282 + -1.4 581,282 + -0.7 581,283 - -1.3 581,291 - -0.7 581,365 + -0.3 581,365 + -0.8 581,400 + +0.8 581,525 - +0.9 581,527 + -0.0 581,527 + -0.7 581,527 + -1.3 581,528 - -1.0 581,569 + -3.2 581,570 - +0.5 581,591 + +0.9 581,641 + IAI47_02815 0.12 -1.2 581,642 - IAI47_02815 0.12 -0.7 581,668 + IAI47_02815 0.14 -1.6 581,669 - IAI47_02815 0.14 -0.3 581,691 - IAI47_02815 0.15 -0.3 581,691 - IAI47_02815 0.15 -1.2 581,691 - IAI47_02815 0.15 -1.9 581,720 + IAI47_02815 0.16 +0.3 581,721 - IAI47_02815 0.16 +0.7 581,785 + IAI47_02815 0.20 +0.0 581,785 + IAI47_02815 0.20 +0.3 581,836 + IAI47_02815 0.22 +0.7 581,847 - IAI47_02815 0.23 +0.1 581,847 - IAI47_02815 0.23 -2.1 581,859 + IAI47_02815 0.24 -0.8 581,859 + IAI47_02815 0.24 -0.1 581,859 + IAI47_02815 0.24 -1.7 581,860 - IAI47_02815 0.24 +0.2 581,860 - IAI47_02815 0.24 -0.2 581,860 - IAI47_02815 0.24 -0.1 581,860 - IAI47_02815 0.24 +1.5 581,860 - IAI47_02815 0.24 -2.8 581,860 - IAI47_02815 0.24 -0.1 581,860 - IAI47_02815 0.24 -1.0 581,904 + IAI47_02815 0.26 -0.3 581,904 + IAI47_02815 0.26 -1.0 581,905 - IAI47_02815 0.26 +0.2 581,947 + IAI47_02815 0.28 -2.1 581,948 - IAI47_02815 0.28 -2.9 582,047 + IAI47_02815 0.33 -0.1 582,059 + IAI47_02815 0.34 -0.4 582,059 + IAI47_02815 0.34 +1.7 582,059 + IAI47_02815 0.34 -1.5 582,096 - IAI47_02815 0.36 -2.9 582,163 + IAI47_02815 0.40 -0.3 582,164 - IAI47_02815 0.40 +1.0 582,164 - IAI47_02815 0.40 -2.1 582,164 - IAI47_02815 0.40 -0.4 582,164 - IAI47_02815 0.40 -0.6 582,164 - IAI47_02815 0.40 -0.6
Or see this region's nucleotide sequence