Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22595 and HSERO_RS22600 are separated by 43 nucleotides HSERO_RS22600 and HSERO_RS22605 are separated by 72 nucleotides HSERO_RS22605 and HSERO_RS22610 are separated by 12 nucleotides HSERO_RS22610 and HSERO_RS22615 are separated by 63 nucleotides
HSERO_RS22595: HSERO_RS22595 - ABC transporter substrate-binding protein, at 5,181,795 to 5,182,037
_RS22595
HSERO_RS22600: HSERO_RS22600 - transcriptional regulator, at 5,182,081 to 5,182,458
_RS22600
HSERO_RS22605: HSERO_RS22605 - histidine kinase, at 5,182,531 to 5,184,087
_RS22605
HSERO_RS22610: HSERO_RS22610 - AraC family transcriptional regulator, at 5,184,100 to 5,184,999
_RS22610
HSERO_RS22615: HSERO_RS22615 - transcriptional regulator, at 5,185,063 to 5,185,701
_RS22615
Position (kb) 5182
5183
5184
5185 Strain fitness (log2 ratio) -1
0
1 at 5181.630 kb on - strand at 5181.665 kb on + strand at 5181.666 kb on + strand at 5181.778 kb on + strand at 5181.812 kb on - strand at 5181.818 kb on + strand at 5181.826 kb on - strand, within HSERO_RS22595 at 5181.850 kb on - strand, within HSERO_RS22595 at 5181.850 kb on - strand, within HSERO_RS22595 at 5181.893 kb on + strand, within HSERO_RS22595 at 5181.972 kb on + strand, within HSERO_RS22595 at 5182.031 kb on + strand at 5182.271 kb on + strand, within HSERO_RS22600 at 5182.271 kb on + strand, within HSERO_RS22600 at 5182.425 kb on + strand at 5182.880 kb on + strand, within HSERO_RS22605 at 5182.968 kb on - strand, within HSERO_RS22605 at 5182.968 kb on - strand, within HSERO_RS22605 at 5183.247 kb on + strand, within HSERO_RS22605 at 5183.276 kb on - strand, within HSERO_RS22605 at 5183.738 kb on + strand, within HSERO_RS22605 at 5183.893 kb on - strand, within HSERO_RS22605 at 5183.900 kb on - strand, within HSERO_RS22605 at 5183.953 kb on + strand at 5184.055 kb on + strand at 5184.245 kb on + strand, within HSERO_RS22610 at 5184.246 kb on + strand, within HSERO_RS22610 at 5184.368 kb on + strand, within HSERO_RS22610 at 5184.481 kb on + strand, within HSERO_RS22610 at 5184.540 kb on + strand, within HSERO_RS22610 at 5184.630 kb on + strand, within HSERO_RS22610 at 5184.655 kb on + strand, within HSERO_RS22610 at 5184.738 kb on - strand, within HSERO_RS22610 at 5184.926 kb on - strand at 5185.053 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days remove 5,181,630 - +0.5 5,181,665 + +0.0 5,181,666 + -0.0 5,181,778 + +0.5 5,181,812 - +0.1 5,181,818 + -0.4 5,181,826 - HSERO_RS22595 0.13 +0.2 5,181,850 - HSERO_RS22595 0.23 -0.5 5,181,850 - HSERO_RS22595 0.23 -0.7 5,181,893 + HSERO_RS22595 0.40 -0.4 5,181,972 + HSERO_RS22595 0.73 -0.8 5,182,031 + +0.1 5,182,271 + HSERO_RS22600 0.50 +0.8 5,182,271 + HSERO_RS22600 0.50 -0.1 5,182,425 + -0.1 5,182,880 + HSERO_RS22605 0.22 +0.5 5,182,968 - HSERO_RS22605 0.28 -0.2 5,182,968 - HSERO_RS22605 0.28 +0.1 5,183,247 + HSERO_RS22605 0.46 +0.3 5,183,276 - HSERO_RS22605 0.48 +0.3 5,183,738 + HSERO_RS22605 0.78 +0.3 5,183,893 - HSERO_RS22605 0.87 -1.2 5,183,900 - HSERO_RS22605 0.88 -0.1 5,183,953 + -0.6 5,184,055 + -0.7 5,184,245 + HSERO_RS22610 0.16 +0.0 5,184,246 + HSERO_RS22610 0.16 +0.7 5,184,368 + HSERO_RS22610 0.30 -1.2 5,184,481 + HSERO_RS22610 0.42 +0.4 5,184,540 + HSERO_RS22610 0.49 +0.1 5,184,630 + HSERO_RS22610 0.59 -0.6 5,184,655 + HSERO_RS22610 0.62 +0.9 5,184,738 - HSERO_RS22610 0.71 +0.3 5,184,926 - +0.6 5,185,053 + -0.2
Or see this region's nucleotide sequence