Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16185

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS16180 and HSERO_RS16185 are separated by 228 nucleotidesHSERO_RS16185 and HSERO_RS16190 are separated by 104 nucleotidesHSERO_RS16190 and HSERO_RS16195 overlap by 4 nucleotides HSERO_RS16180: HSERO_RS16180 - membrane protein, at 3,691,599 to 3,692,363 _RS16180 HSERO_RS16185: HSERO_RS16185 - chemotaxis protein, at 3,692,592 to 3,694,421 _RS16185 HSERO_RS16190: HSERO_RS16190 - hypothetical protein, at 3,694,526 to 3,695,167 _RS16190 HSERO_RS16195: HSERO_RS16195 - RNA polymerase sigma factor, at 3,695,164 to 3,695,793 _RS16195 Position (kb) 3692 3693 3694 3695Strain fitness (log2 ratio) -1 0 1at 3691.644 kb on - strandat 3691.704 kb on - strand, within HSERO_RS16180at 3691.704 kb on - strand, within HSERO_RS16180at 3691.831 kb on + strand, within HSERO_RS16180at 3691.849 kb on - strand, within HSERO_RS16180at 3692.087 kb on + strand, within HSERO_RS16180at 3692.095 kb on - strand, within HSERO_RS16180at 3692.097 kb on + strand, within HSERO_RS16180at 3692.115 kb on - strand, within HSERO_RS16180at 3692.171 kb on - strand, within HSERO_RS16180at 3692.311 kb on + strandat 3692.319 kb on - strandat 3692.417 kb on - strandat 3692.459 kb on + strandat 3692.485 kb on - strandat 3692.507 kb on + strandat 3692.515 kb on - strandat 3692.591 kb on - strandat 3692.677 kb on + strandat 3692.716 kb on - strandat 3692.790 kb on - strand, within HSERO_RS16185at 3692.806 kb on + strand, within HSERO_RS16185at 3692.835 kb on + strand, within HSERO_RS16185at 3692.888 kb on - strand, within HSERO_RS16185at 3693.125 kb on + strand, within HSERO_RS16185at 3693.210 kb on + strand, within HSERO_RS16185at 3693.282 kb on + strand, within HSERO_RS16185at 3693.346 kb on - strand, within HSERO_RS16185at 3693.348 kb on + strand, within HSERO_RS16185at 3693.351 kb on - strand, within HSERO_RS16185at 3693.526 kb on + strand, within HSERO_RS16185at 3693.750 kb on + strand, within HSERO_RS16185at 3694.009 kb on + strand, within HSERO_RS16185at 3694.050 kb on - strand, within HSERO_RS16185at 3694.153 kb on - strand, within HSERO_RS16185at 3694.230 kb on - strand, within HSERO_RS16185at 3694.230 kb on - strand, within HSERO_RS16185at 3694.343 kb on - strandat 3694.422 kb on - strandat 3694.610 kb on - strand, within HSERO_RS16190at 3694.629 kb on - strand, within HSERO_RS16190at 3694.664 kb on + strand, within HSERO_RS16190at 3694.696 kb on - strand, within HSERO_RS16190at 3694.784 kb on + strand, within HSERO_RS16190at 3694.843 kb on - strand, within HSERO_RS16190at 3694.920 kb on - strand, within HSERO_RS16190at 3694.931 kb on + strand, within HSERO_RS16190at 3694.962 kb on - strand, within HSERO_RS16190at 3694.973 kb on + strand, within HSERO_RS16190at 3695.009 kb on - strand, within HSERO_RS16190at 3695.013 kb on - strand, within HSERO_RS16190at 3695.070 kb on + strand, within HSERO_RS16190at 3695.282 kb on + strand, within HSERO_RS16195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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3,691,644 - +0.2
3,691,704 - HSERO_RS16180 0.14 +0.2
3,691,704 - HSERO_RS16180 0.14 -0.2
3,691,831 + HSERO_RS16180 0.30 +0.7
3,691,849 - HSERO_RS16180 0.33 +0.6
3,692,087 + HSERO_RS16180 0.64 +0.3
3,692,095 - HSERO_RS16180 0.65 +0.4
3,692,097 + HSERO_RS16180 0.65 +0.3
3,692,115 - HSERO_RS16180 0.67 +0.3
3,692,171 - HSERO_RS16180 0.75 +0.4
3,692,311 + +0.3
3,692,319 - +0.3
3,692,417 - -0.4
3,692,459 + -0.2
3,692,485 - +0.1
3,692,507 + +0.1
3,692,515 - -0.1
3,692,591 - -0.3
3,692,677 + +0.4
3,692,716 - +0.4
3,692,790 - HSERO_RS16185 0.11 -0.2
3,692,806 + HSERO_RS16185 0.12 -0.7
3,692,835 + HSERO_RS16185 0.13 +0.3
3,692,888 - HSERO_RS16185 0.16 -0.2
3,693,125 + HSERO_RS16185 0.29 +0.5
3,693,210 + HSERO_RS16185 0.34 -0.4
3,693,282 + HSERO_RS16185 0.38 +0.2
3,693,346 - HSERO_RS16185 0.41 +0.5
3,693,348 + HSERO_RS16185 0.41 -0.2
3,693,351 - HSERO_RS16185 0.41 +0.1
3,693,526 + HSERO_RS16185 0.51 +0.3
3,693,750 + HSERO_RS16185 0.63 -0.4
3,694,009 + HSERO_RS16185 0.77 -0.9
3,694,050 - HSERO_RS16185 0.80 +0.5
3,694,153 - HSERO_RS16185 0.85 +0.0
3,694,230 - HSERO_RS16185 0.90 -0.7
3,694,230 - HSERO_RS16185 0.90 +0.5
3,694,343 - +0.4
3,694,422 - -1.2
3,694,610 - HSERO_RS16190 0.13 -0.2
3,694,629 - HSERO_RS16190 0.16 +1.0
3,694,664 + HSERO_RS16190 0.21 -0.3
3,694,696 - HSERO_RS16190 0.26 -0.0
3,694,784 + HSERO_RS16190 0.40 +0.3
3,694,843 - HSERO_RS16190 0.49 -0.6
3,694,920 - HSERO_RS16190 0.61 +0.1
3,694,931 + HSERO_RS16190 0.63 +0.3
3,694,962 - HSERO_RS16190 0.68 -0.2
3,694,973 + HSERO_RS16190 0.70 -0.2
3,695,009 - HSERO_RS16190 0.75 -1.4
3,695,013 - HSERO_RS16190 0.76 -0.3
3,695,070 + HSERO_RS16190 0.85 -0.8
3,695,282 + HSERO_RS16195 0.19 -0.4

Or see this region's nucleotide sequence