Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10740

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10735 and HSERO_RS10740 are separated by 233 nucleotidesHSERO_RS10740 and HSERO_RS10745 are separated by 77 nucleotides HSERO_RS10735: HSERO_RS10735 - major facilitator transporter, at 2,413,401 to 2,414,672 _RS10735 HSERO_RS10740: HSERO_RS10740 - alanine racemase, at 2,414,906 to 2,415,985 _RS10740 HSERO_RS10745: HSERO_RS10745 - DNA repair protein RadA, at 2,416,063 to 2,417,448 _RS10745 Position (kb) 2414 2415 2416Strain fitness (log2 ratio) -1 0 1at 2414.734 kb on + strandat 2416.071 kb on + strandat 2416.151 kb on + strandat 2416.151 kb on + strandat 2416.327 kb on - strand, within HSERO_RS10745at 2416.365 kb on - strand, within HSERO_RS10745at 2416.567 kb on - strand, within HSERO_RS10745at 2416.642 kb on + strand, within HSERO_RS10745at 2416.778 kb on - strand, within HSERO_RS10745

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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2,414,734 + +0.2
2,416,071 + -0.2
2,416,151 + -0.6
2,416,151 + -1.5
2,416,327 - HSERO_RS10745 0.19 -0.3
2,416,365 - HSERO_RS10745 0.22 -0.1
2,416,567 - HSERO_RS10745 0.36 +0.1
2,416,642 + HSERO_RS10745 0.42 +0.8
2,416,778 - HSERO_RS10745 0.52 -0.4

Or see this region's nucleotide sequence