Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08505

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08500 and HSERO_RS08505 are separated by 307 nucleotidesHSERO_RS08505 and HSERO_RS08510 are separated by 34 nucleotides HSERO_RS08500: HSERO_RS08500 - hypothetical protein, at 1,934,078 to 1,935,895 _RS08500 HSERO_RS08505: HSERO_RS08505 - methyl-accepting chemotaxis protein, at 1,936,203 to 1,937,771 _RS08505 HSERO_RS08510: HSERO_RS08510 - phosphodiesterase, at 1,937,806 to 1,939,572 _RS08510 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -2 -1 0 1at 1935.274 kb on - strand, within HSERO_RS08500at 1935.344 kb on + strand, within HSERO_RS08500at 1935.628 kb on + strand, within HSERO_RS08500at 1935.663 kb on - strand, within HSERO_RS08500at 1935.663 kb on - strand, within HSERO_RS08500at 1935.711 kb on + strand, within HSERO_RS08500at 1935.729 kb on - strandat 1935.847 kb on - strandat 1935.910 kb on - strandat 1935.951 kb on + strandat 1936.032 kb on + strandat 1936.040 kb on - strandat 1936.094 kb on - strandat 1936.198 kb on + strandat 1936.375 kb on - strand, within HSERO_RS08505at 1936.419 kb on + strand, within HSERO_RS08505at 1936.425 kb on - strand, within HSERO_RS08505at 1936.427 kb on - strand, within HSERO_RS08505at 1936.463 kb on - strand, within HSERO_RS08505at 1936.656 kb on + strand, within HSERO_RS08505at 1936.816 kb on - strand, within HSERO_RS08505at 1936.930 kb on + strand, within HSERO_RS08505at 1936.930 kb on + strand, within HSERO_RS08505at 1936.990 kb on - strand, within HSERO_RS08505at 1937.011 kb on + strand, within HSERO_RS08505at 1937.124 kb on - strand, within HSERO_RS08505at 1937.139 kb on - strand, within HSERO_RS08505at 1937.263 kb on - strand, within HSERO_RS08505at 1937.315 kb on + strand, within HSERO_RS08505at 1937.547 kb on - strand, within HSERO_RS08505at 1937.617 kb on - strandat 1937.659 kb on - strandat 1937.775 kb on - strandat 1937.863 kb on - strandat 1937.863 kb on - strandat 1937.998 kb on - strand, within HSERO_RS08510at 1938.108 kb on + strand, within HSERO_RS08510at 1938.270 kb on - strand, within HSERO_RS08510at 1938.370 kb on - strand, within HSERO_RS08510at 1938.454 kb on + strand, within HSERO_RS08510at 1938.557 kb on + strand, within HSERO_RS08510

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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1,935,274 - HSERO_RS08500 0.66 -0.1
1,935,344 + HSERO_RS08500 0.70 -0.2
1,935,628 + HSERO_RS08500 0.85 +0.0
1,935,663 - HSERO_RS08500 0.87 -0.2
1,935,663 - HSERO_RS08500 0.87 -0.4
1,935,711 + HSERO_RS08500 0.90 -0.7
1,935,729 - +0.1
1,935,847 - -1.0
1,935,910 - -0.2
1,935,951 + -0.3
1,936,032 + -2.4
1,936,040 - +0.2
1,936,094 - -0.3
1,936,198 + -0.2
1,936,375 - HSERO_RS08505 0.11 -0.5
1,936,419 + HSERO_RS08505 0.14 +0.2
1,936,425 - HSERO_RS08505 0.14 +0.8
1,936,427 - HSERO_RS08505 0.14 +0.2
1,936,463 - HSERO_RS08505 0.17 +0.5
1,936,656 + HSERO_RS08505 0.29 -0.6
1,936,816 - HSERO_RS08505 0.39 +0.7
1,936,930 + HSERO_RS08505 0.46 -1.3
1,936,930 + HSERO_RS08505 0.46 +0.0
1,936,990 - HSERO_RS08505 0.50 -0.1
1,937,011 + HSERO_RS08505 0.51 -0.0
1,937,124 - HSERO_RS08505 0.59 -0.1
1,937,139 - HSERO_RS08505 0.60 +0.4
1,937,263 - HSERO_RS08505 0.68 +0.8
1,937,315 + HSERO_RS08505 0.71 +0.1
1,937,547 - HSERO_RS08505 0.86 +0.5
1,937,617 - +0.2
1,937,659 - -0.1
1,937,775 - +0.1
1,937,863 - +0.5
1,937,863 - +0.0
1,937,998 - HSERO_RS08510 0.11 +0.6
1,938,108 + HSERO_RS08510 0.17 +0.4
1,938,270 - HSERO_RS08510 0.26 -0.2
1,938,370 - HSERO_RS08510 0.32 +0.1
1,938,454 + HSERO_RS08510 0.37 -0.2
1,938,557 + HSERO_RS08510 0.43 -0.1

Or see this region's nucleotide sequence