Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07580

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07570 and HSERO_RS07575 are separated by 313 nucleotidesHSERO_RS07575 and HSERO_RS07580 are separated by 71 nucleotidesHSERO_RS07580 and HSERO_RS07585 are separated by 84 nucleotides HSERO_RS07570: HSERO_RS07570 - membrane protein, at 1,728,843 to 1,729,265 _RS07570 HSERO_RS07575: HSERO_RS07575 - 30S ribosomal protein S16, at 1,729,579 to 1,729,833 _RS07575 HSERO_RS07580: HSERO_RS07580 - ribosome maturation factor RimM, at 1,729,905 to 1,730,519 _RS07580 HSERO_RS07585: HSERO_RS07585 - tRNA (guanine-N1)-methyltransferase, at 1,730,604 to 1,731,377 _RS07585 Position (kb) 1729 1730 1731Strain fitness (log2 ratio) -1 0 1at 1729.201 kb on - strand, within HSERO_RS07570at 1731.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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1,729,201 - HSERO_RS07570 0.85 -0.2
1,731,373 - +0.3

Or see this region's nucleotide sequence