Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04290 and HSERO_RS04295 are separated by 966 nucleotides HSERO_RS04295 and HSERO_RS04300 overlap by 17 nucleotides
HSERO_RS04290: HSERO_RS04290 - DNA-binding protein, at 941,596 to 942,048
_RS04290
HSERO_RS04295: HSERO_RS04295 - diguanylate cyclase, at 943,015 to 945,135
_RS04295
HSERO_RS04300: HSERO_RS04300 - multidrug transporter MatE, at 945,119 to 946,504
_RS04300
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 942.261 kb on - strand at 942.273 kb on + strand at 942.281 kb on - strand at 942.400 kb on + strand at 942.641 kb on + strand at 942.670 kb on - strand at 943.174 kb on - strand at 943.196 kb on - strand at 943.204 kb on + strand at 943.260 kb on + strand, within HSERO_RS04295 at 943.262 kb on + strand, within HSERO_RS04295 at 943.472 kb on - strand, within HSERO_RS04295 at 943.625 kb on - strand, within HSERO_RS04295 at 943.862 kb on + strand, within HSERO_RS04295 at 943.885 kb on + strand, within HSERO_RS04295 at 943.959 kb on + strand, within HSERO_RS04295 at 944.157 kb on - strand, within HSERO_RS04295 at 944.443 kb on - strand, within HSERO_RS04295 at 944.506 kb on - strand, within HSERO_RS04295 at 944.571 kb on + strand, within HSERO_RS04295 at 944.729 kb on + strand, within HSERO_RS04295 at 944.798 kb on + strand, within HSERO_RS04295 at 945.062 kb on - strand at 945.071 kb on - strand at 945.111 kb on - strand at 945.162 kb on + strand at 945.186 kb on + strand at 945.267 kb on - strand, within HSERO_RS04300 at 945.289 kb on + strand, within HSERO_RS04300 at 945.312 kb on + strand, within HSERO_RS04300 at 945.391 kb on - strand, within HSERO_RS04300 at 945.443 kb on - strand, within HSERO_RS04300 at 945.672 kb on - strand, within HSERO_RS04300 at 945.692 kb on - strand, within HSERO_RS04300 at 945.715 kb on + strand, within HSERO_RS04300 at 945.715 kb on + strand, within HSERO_RS04300 at 945.743 kb on + strand, within HSERO_RS04300
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days remove 942,261 - -1.0 942,273 + -0.4 942,281 - -0.8 942,400 + -0.3 942,641 + -0.1 942,670 - -0.8 943,174 - -1.5 943,196 - -0.4 943,204 + -0.8 943,260 + HSERO_RS04295 0.12 -1.8 943,262 + HSERO_RS04295 0.12 -1.9 943,472 - HSERO_RS04295 0.22 -1.6 943,625 - HSERO_RS04295 0.29 -1.2 943,862 + HSERO_RS04295 0.40 -0.3 943,885 + HSERO_RS04295 0.41 -0.0 943,959 + HSERO_RS04295 0.45 -2.8 944,157 - HSERO_RS04295 0.54 -1.2 944,443 - HSERO_RS04295 0.67 -1.0 944,506 - HSERO_RS04295 0.70 -1.1 944,571 + HSERO_RS04295 0.73 -1.0 944,729 + HSERO_RS04295 0.81 -0.9 944,798 + HSERO_RS04295 0.84 -2.2 945,062 - -0.4 945,071 - +0.1 945,111 - -0.9 945,162 + -0.8 945,186 + -0.5 945,267 - HSERO_RS04300 0.11 +0.0 945,289 + HSERO_RS04300 0.12 +0.4 945,312 + HSERO_RS04300 0.14 -0.9 945,391 - HSERO_RS04300 0.20 +0.1 945,443 - HSERO_RS04300 0.23 -0.2 945,672 - HSERO_RS04300 0.40 +0.0 945,692 - HSERO_RS04300 0.41 -0.2 945,715 + HSERO_RS04300 0.43 +0.2 945,715 + HSERO_RS04300 0.43 -0.6 945,743 + HSERO_RS04300 0.45 -0.0
Or see this region's nucleotide sequence