Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03805

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03800 and HSERO_RS03805 are separated by 534 nucleotidesHSERO_RS03805 and HSERO_RS03810 are separated by 118 nucleotides HSERO_RS03800: HSERO_RS03800 - hypothetical protein, at 839,239 to 840,078 _RS03800 HSERO_RS03805: HSERO_RS03805 - hypothetical protein, at 840,613 to 840,828 _RS03805 HSERO_RS03810: HSERO_RS03810 - hypothetical protein, at 840,947 to 841,798 _RS03810 Position (kb) 840 841Strain fitness (log2 ratio) -1 0 1at 839.647 kb on - strand, within HSERO_RS03800at 839.713 kb on + strand, within HSERO_RS03800at 839.757 kb on + strand, within HSERO_RS03800at 839.824 kb on + strand, within HSERO_RS03800at 839.824 kb on - strand, within HSERO_RS03800at 839.847 kb on + strand, within HSERO_RS03800at 839.847 kb on + strand, within HSERO_RS03800at 839.906 kb on + strand, within HSERO_RS03800at 839.953 kb on - strand, within HSERO_RS03800at 839.955 kb on + strand, within HSERO_RS03800at 840.108 kb on - strandat 840.110 kb on + strandat 840.110 kb on + strandat 840.118 kb on - strandat 840.138 kb on + strandat 840.138 kb on + strandat 840.227 kb on - strandat 840.460 kb on - strandat 840.564 kb on + strandat 840.653 kb on - strand, within HSERO_RS03805at 840.704 kb on + strand, within HSERO_RS03805at 840.712 kb on - strand, within HSERO_RS03805at 840.840 kb on - strandat 840.891 kb on - strandat 840.891 kb on - strandat 840.971 kb on - strandat 841.266 kb on + strand, within HSERO_RS03810at 841.475 kb on + strand, within HSERO_RS03810

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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839,647 - HSERO_RS03800 0.49 +0.2
839,713 + HSERO_RS03800 0.56 -0.0
839,757 + HSERO_RS03800 0.62 +0.4
839,824 + HSERO_RS03800 0.70 +1.4
839,824 - HSERO_RS03800 0.70 -0.2
839,847 + HSERO_RS03800 0.72 +0.1
839,847 + HSERO_RS03800 0.72 -0.3
839,906 + HSERO_RS03800 0.79 -0.1
839,953 - HSERO_RS03800 0.85 -0.4
839,955 + HSERO_RS03800 0.85 -1.0
840,108 - +0.3
840,110 + -0.9
840,110 + -0.1
840,118 - +0.2
840,138 + -0.4
840,138 + +0.1
840,227 - +0.2
840,460 - +0.2
840,564 + +0.6
840,653 - HSERO_RS03805 0.19 +0.3
840,704 + HSERO_RS03805 0.42 +0.1
840,712 - HSERO_RS03805 0.46 +0.5
840,840 - -0.5
840,891 - -0.3
840,891 - -0.7
840,971 - +0.8
841,266 + HSERO_RS03810 0.37 +0.3
841,475 + HSERO_RS03810 0.62 -0.0

Or see this region's nucleotide sequence