Experiment: BG11 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sodB and Synpcc7942_0802 are separated by 104 nucleotides Synpcc7942_0802 and Synpcc7942_0803 are separated by 2 nucleotides Synpcc7942_0803 and pdxA overlap by 2 nucleotides
Synpcc7942_0801: sodB - Superoxide dismutase, at 795,123 to 795,812
sodB
Synpcc7942_0802: Synpcc7942_0802 - allophycocyanin alpha chain-like, at 795,917 to 796,504
_0802
Synpcc7942_0803: Synpcc7942_0803 - hypothetical protein, at 796,507 to 797,289
_0803
Synpcc7942_0804: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase, at 797,288 to 798,349
pdxA
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.788 kb on + strand at 795.808 kb on + strand at 795.825 kb on - strand at 795.830 kb on - strand at 795.840 kb on - strand at 795.846 kb on + strand at 795.887 kb on - strand at 795.887 kb on - strand at 795.944 kb on + strand at 795.952 kb on - strand at 795.980 kb on + strand, within Synpcc7942_0802 at 796.014 kb on - strand, within Synpcc7942_0802 at 796.015 kb on + strand, within Synpcc7942_0802 at 796.087 kb on + strand, within Synpcc7942_0802 at 796.087 kb on + strand, within Synpcc7942_0802 at 796.095 kb on - strand, within Synpcc7942_0802 at 796.163 kb on - strand, within Synpcc7942_0802 at 796.195 kb on + strand, within Synpcc7942_0802 at 796.195 kb on + strand, within Synpcc7942_0802 at 796.195 kb on + strand, within Synpcc7942_0802 at 796.204 kb on + strand, within Synpcc7942_0802 at 796.204 kb on + strand, within Synpcc7942_0802 at 796.204 kb on + strand, within Synpcc7942_0802 at 796.207 kb on + strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.242 kb on + strand, within Synpcc7942_0802 at 796.263 kb on + strand, within Synpcc7942_0802 at 796.283 kb on - strand, within Synpcc7942_0802 at 796.300 kb on + strand, within Synpcc7942_0802 at 796.308 kb on - strand, within Synpcc7942_0802 at 796.323 kb on - strand, within Synpcc7942_0802 at 796.343 kb on + strand, within Synpcc7942_0802 at 796.343 kb on + strand, within Synpcc7942_0802 at 796.387 kb on - strand, within Synpcc7942_0802 at 796.444 kb on - strand, within Synpcc7942_0802 at 796.444 kb on - strand, within Synpcc7942_0802 at 796.446 kb on + strand at 796.465 kb on - strand at 796.478 kb on + strand at 796.486 kb on - strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.511 kb on - strand at 796.522 kb on + strand at 796.523 kb on + strand at 796.523 kb on + strand at 796.525 kb on + strand at 796.525 kb on - strand at 796.529 kb on - strand at 796.531 kb on - strand at 796.562 kb on + strand at 796.582 kb on + strand at 796.585 kb on - strand at 796.683 kb on - strand, within Synpcc7942_0803 at 796.727 kb on + strand, within Synpcc7942_0803 at 796.741 kb on + strand, within Synpcc7942_0803 at 796.784 kb on - strand, within Synpcc7942_0803 at 796.784 kb on - strand at 796.794 kb on - strand, within Synpcc7942_0803 at 796.810 kb on + strand, within Synpcc7942_0803 at 796.821 kb on - strand, within Synpcc7942_0803 at 796.835 kb on - strand, within Synpcc7942_0803 at 796.836 kb on - strand, within Synpcc7942_0803 at 796.837 kb on - strand, within Synpcc7942_0803 at 796.876 kb on + strand, within Synpcc7942_0803 at 796.890 kb on - strand, within Synpcc7942_0803 at 796.901 kb on + strand, within Synpcc7942_0803 at 796.918 kb on - strand, within Synpcc7942_0803 at 796.949 kb on - strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 797.007 kb on - strand, within Synpcc7942_0803 at 797.019 kb on - strand, within Synpcc7942_0803 at 797.019 kb on - strand, within Synpcc7942_0803 at 797.045 kb on + strand, within Synpcc7942_0803 at 797.053 kb on + strand, within Synpcc7942_0803 at 797.053 kb on - strand, within Synpcc7942_0803 at 797.077 kb on - strand, within Synpcc7942_0803 at 797.097 kb on - strand, within Synpcc7942_0803 at 797.105 kb on + strand, within Synpcc7942_0803 at 797.111 kb on - strand, within Synpcc7942_0803 at 797.114 kb on - strand, within Synpcc7942_0803 at 797.117 kb on + strand, within Synpcc7942_0803 at 797.119 kb on - strand, within Synpcc7942_0803 at 797.123 kb on + strand, within Synpcc7942_0803 at 797.158 kb on - strand, within Synpcc7942_0803 at 797.163 kb on + strand, within Synpcc7942_0803 at 797.252 kb on + strand at 797.252 kb on + strand at 797.260 kb on - strand at 797.260 kb on - strand at 797.260 kb on - strand at 797.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Nalidixic 0.0078125 mg/ml remove 795,788 + +0.6 795,808 + -0.8 795,825 - -2.1 795,830 - -0.5 795,840 - +0.1 795,846 + +0.2 795,887 - +0.9 795,887 - -0.1 795,944 + -0.6 795,952 - -0.9 795,980 + Synpcc7942_0802 0.11 -2.4 796,014 - Synpcc7942_0802 0.16 -0.7 796,015 + Synpcc7942_0802 0.17 -0.2 796,087 + Synpcc7942_0802 0.29 +0.2 796,087 + Synpcc7942_0802 0.29 +0.8 796,095 - Synpcc7942_0802 0.30 -1.1 796,163 - Synpcc7942_0802 0.42 -2.3 796,195 + Synpcc7942_0802 0.47 -0.7 796,195 + Synpcc7942_0802 0.47 -0.4 796,195 + Synpcc7942_0802 0.47 -0.6 796,204 + Synpcc7942_0802 0.49 -0.3 796,204 + Synpcc7942_0802 0.49 +0.1 796,204 + Synpcc7942_0802 0.49 +0.1 796,207 + Synpcc7942_0802 0.49 -2.3 796,212 - Synpcc7942_0802 0.50 -2.8 796,212 - Synpcc7942_0802 0.50 +0.4 796,212 - Synpcc7942_0802 0.50 +0.2 796,212 - Synpcc7942_0802 0.50 -0.7 796,212 - Synpcc7942_0802 0.50 -1.6 796,212 - Synpcc7942_0802 0.50 -0.9 796,242 + Synpcc7942_0802 0.55 -0.6 796,263 + Synpcc7942_0802 0.59 +1.1 796,283 - Synpcc7942_0802 0.62 +0.4 796,300 + Synpcc7942_0802 0.65 -0.8 796,308 - Synpcc7942_0802 0.66 +0.1 796,323 - Synpcc7942_0802 0.69 -0.2 796,343 + Synpcc7942_0802 0.72 +0.0 796,343 + Synpcc7942_0802 0.72 +0.4 796,387 - Synpcc7942_0802 0.80 +0.8 796,444 - Synpcc7942_0802 0.90 -1.4 796,444 - Synpcc7942_0802 0.90 -0.8 796,446 + -0.0 796,465 - -1.3 796,478 + -0.2 796,486 - -0.1 796,488 + +0.4 796,488 + +0.0 796,488 + -1.1 796,488 + +1.0 796,488 + +0.5 796,488 + -0.0 796,496 - +0.6 796,496 - -0.9 796,496 - -0.1 796,496 - +0.1 796,496 - -1.2 796,496 - +1.1 796,496 - -1.0 796,511 - -0.0 796,522 + +0.6 796,523 + +0.1 796,523 + +0.5 796,525 + +1.8 796,525 - +1.8 796,529 - +0.5 796,531 - +0.7 796,562 + -0.8 796,582 + +0.4 796,585 - +0.2 796,683 - Synpcc7942_0803 0.22 +0.2 796,727 + Synpcc7942_0803 0.28 +2.6 796,741 + Synpcc7942_0803 0.30 +0.2 796,784 - Synpcc7942_0803 0.35 +1.0 796,784 - +0.7 796,794 - Synpcc7942_0803 0.37 +0.3 796,810 + Synpcc7942_0803 0.39 +1.8 796,821 - Synpcc7942_0803 0.40 +0.2 796,835 - Synpcc7942_0803 0.42 +0.3 796,836 - Synpcc7942_0803 0.42 +0.7 796,837 - Synpcc7942_0803 0.42 +0.4 796,876 + Synpcc7942_0803 0.47 +1.1 796,890 - Synpcc7942_0803 0.49 +1.3 796,901 + Synpcc7942_0803 0.50 -0.5 796,918 - Synpcc7942_0803 0.52 +0.3 796,949 - Synpcc7942_0803 0.56 +3.7 796,982 + Synpcc7942_0803 0.61 -0.3 796,982 + Synpcc7942_0803 0.61 +1.9 796,982 + Synpcc7942_0803 0.61 +1.2 796,982 + Synpcc7942_0803 0.61 +1.6 796,982 + Synpcc7942_0803 0.61 +1.2 796,990 - Synpcc7942_0803 0.62 +1.4 796,990 - Synpcc7942_0803 0.62 +0.7 796,990 - Synpcc7942_0803 0.62 +1.6 796,990 - Synpcc7942_0803 0.62 +1.1 796,990 - Synpcc7942_0803 0.62 +1.5 797,007 - Synpcc7942_0803 0.64 -1.4 797,019 - Synpcc7942_0803 0.65 +0.5 797,019 - Synpcc7942_0803 0.65 +0.9 797,045 + Synpcc7942_0803 0.69 +0.4 797,053 + Synpcc7942_0803 0.70 +0.5 797,053 - Synpcc7942_0803 0.70 +0.5 797,077 - Synpcc7942_0803 0.73 +0.7 797,097 - Synpcc7942_0803 0.75 +0.6 797,105 + Synpcc7942_0803 0.76 +0.0 797,111 - Synpcc7942_0803 0.77 -1.0 797,114 - Synpcc7942_0803 0.78 +2.1 797,117 + Synpcc7942_0803 0.78 +0.4 797,119 - Synpcc7942_0803 0.78 +0.2 797,123 + Synpcc7942_0803 0.79 -0.0 797,158 - Synpcc7942_0803 0.83 -0.3 797,163 + Synpcc7942_0803 0.84 +0.7 797,252 + +2.0 797,252 + +1.2 797,260 - +0.5 797,260 - +0.4 797,260 - +1.5 797,318 - -0.0
Or see this region's nucleotide sequence