Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6093

Experiment: Cesium chloride 0.00078125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6092 and Pf6N2E2_6093 are separated by 596 nucleotidesPf6N2E2_6093 and Pf6N2E2_6094 are separated by 174 nucleotides Pf6N2E2_6092 - hypothetical protein, at 6,915,896 to 6,916,273 _6092 Pf6N2E2_6093 - hypothetical protein, at 6,916,870 to 6,917,235 _6093 Pf6N2E2_6094 - Glucoamylase (EC 3.2.1.3), at 6,917,410 to 6,918,999 _6094 Position (kb) 6916 6917 6918Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6915.918 kb on + strandat 6915.918 kb on + strandat 6915.919 kb on - strandat 6916.334 kb on + strandat 6916.335 kb on - strandat 6916.335 kb on - strandat 6916.378 kb on + strandat 6916.379 kb on - strandat 6916.379 kb on - strandat 6916.466 kb on + strandat 6916.477 kb on - strandat 6916.523 kb on + strandat 6916.523 kb on + strandat 6916.524 kb on - strandat 6916.524 kb on - strandat 6916.542 kb on + strandat 6916.573 kb on + strandat 6916.694 kb on + strandat 6916.694 kb on + strandat 6916.694 kb on + strandat 6916.733 kb on + strandat 6916.734 kb on - strandat 6916.802 kb on + strandat 6916.802 kb on + strandat 6916.803 kb on - strandat 6916.867 kb on - strandat 6916.867 kb on - strandat 6916.918 kb on + strand, within Pf6N2E2_6093at 6916.918 kb on + strand, within Pf6N2E2_6093at 6916.919 kb on - strand, within Pf6N2E2_6093at 6916.919 kb on - strand, within Pf6N2E2_6093at 6917.221 kb on + strandat 6917.544 kb on - strandat 6917.897 kb on + strand, within Pf6N2E2_6094at 6917.898 kb on - strand, within Pf6N2E2_6094at 6917.898 kb on - strand, within Pf6N2E2_6094at 6917.898 kb on - strand, within Pf6N2E2_6094at 6918.042 kb on + strand, within Pf6N2E2_6094at 6918.132 kb on - strand, within Pf6N2E2_6094at 6918.146 kb on + strand, within Pf6N2E2_6094

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Per-strain Table

Position Strand Gene LocusTag Fraction Cesium chloride 0.00078125 M
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6,915,918 + +0.8
6,915,918 + +0.3
6,915,919 - -0.5
6,916,334 + +0.4
6,916,335 - +0.9
6,916,335 - +0.1
6,916,378 + +0.2
6,916,379 - +0.1
6,916,379 - +0.3
6,916,466 + +0.8
6,916,477 - +1.2
6,916,523 + -0.7
6,916,523 + -1.8
6,916,524 - +0.8
6,916,524 - +0.6
6,916,542 + -0.1
6,916,573 + -1.2
6,916,694 + -0.8
6,916,694 + +3.4
6,916,694 + -0.4
6,916,733 + -0.8
6,916,734 - -0.2
6,916,802 + -0.2
6,916,802 + +1.2
6,916,803 - +0.1
6,916,867 - -0.1
6,916,867 - -0.7
6,916,918 + Pf6N2E2_6093 0.13 -0.4
6,916,918 + Pf6N2E2_6093 0.13 -0.4
6,916,919 - Pf6N2E2_6093 0.13 -0.4
6,916,919 - Pf6N2E2_6093 0.13 -0.4
6,917,221 + -0.3
6,917,544 - -0.6
6,917,897 + Pf6N2E2_6094 0.31 +0.2
6,917,898 - Pf6N2E2_6094 0.31 +0.1
6,917,898 - Pf6N2E2_6094 0.31 +1.0
6,917,898 - Pf6N2E2_6094 0.31 +0.3
6,918,042 + Pf6N2E2_6094 0.40 +0.6
6,918,132 - Pf6N2E2_6094 0.45 +0.1
6,918,146 + Pf6N2E2_6094 0.46 +1.2

Or see this region's nucleotide sequence