Experiment: Cesium chloride 0.00078125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3538 and Pf6N2E2_3539 are separated by 65 nucleotides Pf6N2E2_3539 and Pf6N2E2_3540 are separated by 375 nucleotides Pf6N2E2_3540 and Pf6N2E2_3541 are separated by 57 nucleotides
Pf6N2E2_3538 - hypothetical protein, at 4,129,564 to 4,129,836
_3538
Pf6N2E2_3539 - FIG00955840: hypothetical protein, at 4,129,902 to 4,130,027
_3539
Pf6N2E2_3540 - Copper metallochaperone, bacterial analog of Cox17 protein, at 4,130,403 to 4,130,555
_3540
Pf6N2E2_3541 - Putative multicopper oxidases, at 4,130,613 to 4,131,011
_3541
Position (kb)
4129
4130
4131 Strain fitness (log2 ratio)
-2
-1
0
1 at 4128.972 kb on + strand at 4128.972 kb on + strand at 4128.973 kb on - strand at 4129.076 kb on + strand at 4129.077 kb on - strand at 4129.094 kb on + strand at 4129.094 kb on + strand at 4129.094 kb on + strand at 4129.094 kb on + strand at 4129.094 kb on + strand at 4129.095 kb on - strand at 4129.095 kb on - strand at 4129.177 kb on + strand at 4129.177 kb on + strand at 4129.177 kb on + strand at 4129.209 kb on + strand at 4129.209 kb on + strand at 4129.210 kb on - strand at 4129.210 kb on - strand at 4129.213 kb on + strand at 4129.213 kb on + strand at 4129.213 kb on + strand at 4129.214 kb on - strand at 4129.214 kb on - strand at 4129.214 kb on - strand at 4129.214 kb on - strand at 4129.214 kb on - strand at 4129.293 kb on - strand at 4129.293 kb on - strand at 4129.308 kb on + strand at 4129.309 kb on - strand at 4129.309 kb on - strand at 4129.309 kb on - strand at 4129.309 kb on - strand at 4129.309 kb on - strand at 4129.444 kb on + strand at 4129.445 kb on - strand at 4129.445 kb on - strand at 4129.505 kb on - strand at 4129.520 kb on - strand at 4129.520 kb on - strand at 4129.520 kb on - strand at 4129.526 kb on - strand at 4129.526 kb on - strand at 4129.546 kb on - strand at 4129.565 kb on + strand at 4129.565 kb on + strand at 4129.566 kb on - strand at 4129.566 kb on - strand at 4129.566 kb on - strand at 4129.588 kb on - strand at 4129.917 kb on + strand, within Pf6N2E2_3539 at 4129.917 kb on + strand, within Pf6N2E2_3539 at 4129.918 kb on - strand, within Pf6N2E2_3539 at 4130.089 kb on + strand at 4130.089 kb on + strand at 4130.090 kb on - strand at 4130.141 kb on + strand at 4130.141 kb on + strand at 4130.141 kb on + strand at 4130.141 kb on + strand at 4130.141 kb on + strand at 4130.141 kb on + strand at 4130.141 kb on + strand at 4130.142 kb on - strand at 4130.142 kb on - strand at 4130.216 kb on + strand at 4130.217 kb on - strand at 4130.394 kb on + strand at 4130.394 kb on + strand at 4130.395 kb on - strand at 4130.925 kb on + strand, within Pf6N2E2_3541 at 4130.925 kb on + strand, within Pf6N2E2_3541 at 4130.925 kb on + strand, within Pf6N2E2_3541 at 4130.925 kb on + strand, within Pf6N2E2_3541 at 4130.926 kb on - strand, within Pf6N2E2_3541 at 4130.926 kb on - strand, within Pf6N2E2_3541 at 4130.926 kb on - strand, within Pf6N2E2_3541 at 4130.926 kb on - strand, within Pf6N2E2_3541 at 4131.023 kb on + strand at 4131.023 kb on + strand at 4131.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cesium chloride 0.00078125 M remove 4,128,972 + +1.0 4,128,972 + +0.8 4,128,973 - +0.1 4,129,076 + +1.0 4,129,077 - +0.6 4,129,094 + -0.7 4,129,094 + -0.5 4,129,094 + -0.5 4,129,094 + +0.3 4,129,094 + +0.7 4,129,095 - -0.3 4,129,095 - -0.2 4,129,177 + -0.3 4,129,177 + +0.3 4,129,177 + +0.2 4,129,209 + -0.5 4,129,209 + +0.5 4,129,210 - +0.5 4,129,210 - +0.1 4,129,213 + +0.4 4,129,213 + +0.5 4,129,213 + +0.2 4,129,214 - +0.0 4,129,214 - +0.2 4,129,214 - -1.9 4,129,214 - +0.1 4,129,214 - +0.9 4,129,293 - +1.1 4,129,293 - -0.8 4,129,308 + +0.4 4,129,309 - +1.6 4,129,309 - +0.0 4,129,309 - +0.1 4,129,309 - -0.7 4,129,309 - +0.4 4,129,444 + -0.2 4,129,445 - +0.1 4,129,445 - -0.2 4,129,505 - -0.3 4,129,520 - -0.2 4,129,520 - +0.1 4,129,520 - -0.2 4,129,526 - -0.2 4,129,526 - -0.5 4,129,546 - +0.8 4,129,565 + +0.6 4,129,565 + +0.8 4,129,566 - +0.3 4,129,566 - -0.7 4,129,566 - +0.6 4,129,588 - +0.5 4,129,917 + Pf6N2E2_3539 0.12 -0.2 4,129,917 + Pf6N2E2_3539 0.12 -0.4 4,129,918 - Pf6N2E2_3539 0.13 -1.7 4,130,089 + +0.5 4,130,089 + +0.2 4,130,090 - +0.6 4,130,141 + -0.6 4,130,141 + -1.4 4,130,141 + +0.4 4,130,141 + +0.1 4,130,141 + -0.0 4,130,141 + +0.5 4,130,141 + -0.2 4,130,142 - -0.0 4,130,142 - +0.8 4,130,216 + -0.5 4,130,217 - +0.8 4,130,394 + +1.1 4,130,394 + +0.6 4,130,395 - -1.3 4,130,925 + Pf6N2E2_3541 0.78 +0.4 4,130,925 + Pf6N2E2_3541 0.78 +0.4 4,130,925 + Pf6N2E2_3541 0.78 +0.2 4,130,925 + Pf6N2E2_3541 0.78 -0.8 4,130,926 - Pf6N2E2_3541 0.78 -0.9 4,130,926 - Pf6N2E2_3541 0.78 +0.5 4,130,926 - Pf6N2E2_3541 0.78 +0.3 4,130,926 - Pf6N2E2_3541 0.78 +0.6 4,131,023 + +0.2 4,131,023 + -0.2 4,131,024 - -0.8
Or see this region's nucleotide sequence