Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03065

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03060 and HSERO_RS03065 are separated by 44 nucleotidesHSERO_RS03065 and HSERO_RS03070 are separated by 553 nucleotides HSERO_RS03060: HSERO_RS03060 - DNA repair protein, at 668,280 to 669,926 _RS03060 HSERO_RS03065: HSERO_RS03065 - ferrochelatase, at 669,971 to 671,080 _RS03065 HSERO_RS03070: HSERO_RS03070 - co-chaperone GrpE, at 671,634 to 672,203 _RS03070 Position (kb) 669 670 671 672Strain fitness (log2 ratio) -1 0 1at 669.059 kb on + strand, within HSERO_RS03060at 669.172 kb on + strand, within HSERO_RS03060at 669.553 kb on - strand, within HSERO_RS03060at 671.106 kb on + strandat 671.236 kb on + strandat 671.261 kb on + strandat 671.264 kb on + strandat 671.282 kb on - strandat 671.282 kb on - strandat 671.306 kb on - strandat 671.306 kb on - strandat 671.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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669,059 + HSERO_RS03060 0.47 -0.3
669,172 + HSERO_RS03060 0.54 +0.1
669,553 - HSERO_RS03060 0.77 -0.6
671,106 + +0.1
671,236 + -0.4
671,261 + -0.3
671,264 + +1.1
671,282 - -0.3
671,282 - -0.4
671,306 - -0.1
671,306 - -1.3
671,437 + -0.3

Or see this region's nucleotide sequence