Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03906

Experiment: PYE 30C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep3 28 days
3,577,961	-		CCNA_03410	0.25	+0.7
3,577,966	-		CCNA_03410	0.26	-0.2
3,577,975	+		CCNA_03410	0.27	+2.5
3,578,000	+		CCNA_03410	0.30	-1.4
3,578,023	-		CCNA_03410	0.33	-1.0
3,578,050	+		CCNA_03410	0.36	+1.1
3,578,052	+		CCNA_03410	0.36	-0.3
3,578,060	-		CCNA_03410	0.37	-0.8
3,578,060	-		CCNA_03410	0.37	+0.5
3,578,060	-		CCNA_03410	0.37	-0.2
3,578,089	-		CCNA_03410	0.41	-0.6
3,578,130	-		CCNA_03410	0.46	+0.5
3,578,138	+		CCNA_03410	0.47	-2.8
3,578,138	+		CCNA_03410	0.47	+1.5
3,578,138	+		CCNA_03410	0.47	-0.6
3,578,138	+		CCNA_03410	0.47	+0.6
3,578,138	+		CCNA_03410	0.47	-1.6
3,578,146	-		CCNA_03410	0.48	-0.2
3,578,146	-		CCNA_03410	0.48	-0.1
3,578,146	-		CCNA_03410	0.48	+2.7
3,578,177	-		CCNA_03410	0.52	+1.0
3,578,187	-		CCNA_03410	0.53	-0.7
3,578,203	-		CCNA_03410	0.55	+0.5
3,578,246	+		CCNA_03410	0.60	-1.6
3,578,246	+		CCNA_03410	0.60	+0.8
3,578,254	-		CCNA_03410	0.61	-0.2
3,578,254	-		CCNA_03410	0.61	-0.2
3,578,254	-		CCNA_03410	0.61	+0.2
3,578,256	+		CCNA_03410	0.61	-0.8
3,578,259	-		CCNA_03410	0.62	-0.2
3,578,328	-		CCNA_03410	0.70	-0.7
3,578,328	-		CCNA_03410	0.70	+0.6
3,578,362	-		CCNA_03410	0.74	+0.2
3,578,368	-		CCNA_03410	0.75	-1.5
3,578,380	-		CCNA_03410	0.77	+0.7
3,578,387	-		CCNA_03410	0.77	-0.7
3,578,391	+		CCNA_03410	0.78	+1.5
3,578,432	-		CCNA_03410	0.83	-0.1
3,578,518	+				+0.1
3,578,526	-				-0.3
3,578,564	+				+4.6
3,578,572	-				+0.7
3,578,572	-				+0.2
3,578,581	-				+1.1
3,578,608	+				-1.4
3,578,629	+				-1.3
3,578,637	-				-2.7
3,578,649	-				+0.5
3,578,649	-				+1.1
3,578,656	-				-4.7
3,578,894	-				-0.4
3,578,952	+		CCNA_03906	0.10	-2.1
3,578,952	+		CCNA_03906	0.10	-1.3
3,578,953	+		CCNA_03906	0.10	-0.3
3,578,960	-		CCNA_03906	0.12	-2.8
3,578,960	-		CCNA_03906	0.12	-3.0
3,578,960	-		CCNA_03906	0.12	-2.2
3,578,960	-		CCNA_03906	0.12	-3.8
3,578,960	-		CCNA_03906	0.12	-3.3
3,578,960	-		CCNA_03906	0.12	+2.1
3,578,984	-		CCNA_03906	0.19	-2.4
3,579,036	-		CCNA_03906	0.34	-1.9
3,579,042	+		CCNA_03906	0.36	+2.8
3,579,045	-		CCNA_03906	0.36	-4.4
3,579,075	-		CCNA_03906	0.45	-0.9
3,579,077	+		CCNA_03906	0.45	-0.2
3,579,077	+		CCNA_03906	0.45	-1.2
3,579,077	+		CCNA_03906	0.45	+2.6
3,579,077	+		CCNA_03906	0.45	-1.7
3,579,085	-		CCNA_03906	0.48	-2.5
3,579,102	+		CCNA_03906	0.53	-0.8
3,579,118	+		CCNA_03906	0.57	-1.1
3,579,131	+		CCNA_03906	0.61	-0.6
3,579,138	+		CCNA_03906	0.63	-1.4
3,579,139	+		CCNA_03906	0.63	-0.4
3,579,166	+		CCNA_03906	0.71	-0.5
3,579,174	-		CCNA_03906	0.73	-1.1
3,579,195	+		CCNA_03906	0.79	-0.2
3,579,200	+		CCNA_03906	0.80	+0.0
3,579,200	+		CCNA_03906	0.80	-0.4
3,579,200	+		CCNA_03906	0.80	+0.3
3,579,200	+		CCNA_03906	0.80	-1.1
3,579,208	-		CCNA_03906	0.82	-1.1
3,579,208	-				-0.8
3,579,208	-		CCNA_03906	0.82	-1.2
3,579,208	-		CCNA_03906	0.82	-1.2
3,579,208	-		CCNA_03906	0.82	-1.4
3,579,208	-		CCNA_03906	0.82	-1.0
3,579,208	-		CCNA_03906	0.82	-0.8
3,579,208	-		CCNA_03906	0.82	-0.1
3,579,208	-		CCNA_03906	0.82	-1.2
3,579,208	-		CCNA_03906	0.82	-0.7
3,579,215	-		CCNA_03906	0.84	-0.9
3,579,219	+		CCNA_03906	0.86	-0.7
3,579,219	+		CCNA_03906	0.86	-0.8
3,579,219	+		CCNA_03906	0.86	+1.1
3,579,219	+		CCNA_03906	0.86	-0.1
3,579,224	+		CCNA_03906	0.87	-0.5
3,579,227	-		CCNA_03906	0.88	+0.1
3,579,227	-		CCNA_03906	0.88	-1.6
3,579,232	-		CCNA_03906	0.89	-1.4
3,579,257	-				-1.0
3,579,257	-				-0.6
3,579,290	+				+3.4
3,579,290	+				+1.5
3,579,290	-				+0.0
3,579,298	-				-1.7
3,579,298	-				-2.7
3,579,302	+				-0.0
3,579,314	+				-0.3
3,579,314	+				-1.1
3,579,314	+				+0.5
3,579,314	+				-0.5
3,579,322	-				-1.5
3,579,322	-				-2.4
3,579,322	-				+2.1
3,579,349	+				-0.3
3,579,366	-				-0.8
3,579,373	+				-0.3
3,579,430	+				-0.2
3,579,438	-				+1.0
3,579,463	-				+1.0
3,579,463	-				+1.0
3,579,504	+				+1.9
3,579,504	+				-2.6
3,579,504	+				+0.2
3,579,504	+				-0.8
3,579,512	-				+0.6
3,579,512	-				+0.3
3,579,514	+				+2.1
3,579,526	+				-0.6
3,579,528	+				-1.0
3,579,528	+				+0.2
3,579,538	+				+0.5
3,579,538	+				+1.1
3,579,538	+				+0.8
3,579,546	-				+2.1
3,579,546	-				+1.0
3,579,546	-				+0.2
3,579,555	-		CCNA_03412	0.11	+0.9
3,579,570	+		CCNA_03412	0.12	+0.8
3,579,590	+		CCNA_03412	0.13	+0.2
3,579,603	-		CCNA_03412	0.14	+1.3
3,579,628	-		CCNA_03412	0.16	+0.8
3,579,664	+		CCNA_03412	0.18	-0.3
3,579,672	-		CCNA_03412	0.19	-0.5
3,579,672	-		CCNA_03412	0.19	+0.8
3,579,707	-		CCNA_03412	0.21	-0.3
3,579,717	-		CCNA_03412	0.22	+0.4
3,579,733	-		CCNA_03412	0.23	+1.7
3,579,792	-		CCNA_03412	0.27	+0.6
3,579,818	+		CCNA_03412	0.29	-1.0
3,579,827	+		CCNA_03412	0.30	-1.3
3,579,834	+		CCNA_03412	0.30	-1.8
3,579,834	+		CCNA_03412	0.30	+2.1
3,579,842	-		CCNA_03412	0.31	-0.0
3,579,842	-		CCNA_03412	0.31	-0.4
3,579,870	-		CCNA_03412	0.33	+0.0
3,579,870	-		CCNA_03412	0.33	+1.1
3,579,877	-		CCNA_03412	0.33	+0.7
3,579,877	-		CCNA_03412	0.33	+0.9
3,579,877	-		CCNA_03412	0.33	+0.1
3,579,931	+		CCNA_03412	0.37	-3.1
3,579,931	+		CCNA_03412	0.37	+1.1
3,579,938	-		CCNA_03412	0.38	-0.0
3,579,939	-		CCNA_03412	0.38	-0.7
3,579,961	+		CCNA_03412	0.39	+2.1
3,579,968	-		CCNA_03412	0.40	+1.8
3,580,008	+		CCNA_03412	0.42	+2.1
3,580,008	+		CCNA_03412	0.42	+1.1
3,580,015	+				-1.7
3,580,016	-		CCNA_03412	0.43	+0.4
3,580,016	-		CCNA_03412	0.43	+0.8
3,580,016	-		CCNA_03412	0.43	+0.5
3,580,023	-		CCNA_03412	0.44	-1.8
3,580,023	-		CCNA_03412	0.44	-0.1
3,580,027	+		CCNA_03412	0.44	-1.3
3,580,027	+		CCNA_03412	0.44	-1.6
3,580,027	+		CCNA_03412	0.44	-3.8
3,580,035	-		CCNA_03412	0.44	+0.3
3,580,040	-		CCNA_03412	0.45	+1.4
3,580,102	-		CCNA_03412	0.49	+0.6
3,580,109	-		CCNA_03412	0.50	+1.6
3,580,109	-		CCNA_03412	0.50	-0.7
3,580,155	+		CCNA_03412	0.53	-0.1
3,580,163	-		CCNA_03412	0.53	+0.2
3,580,182	+		CCNA_03412	0.55	+0.4
3,580,195	-		CCNA_03412	0.56	+0.8
3,580,211	+		CCNA_03412	0.57	-0.7
3,580,239	-		CCNA_03412	0.59	-0.2