Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02882

Experiment: PYE 30C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep3 28 days
3,029,675	-		CCNA_02881	0.51	+0.5
3,029,683	-		CCNA_02881	0.51	-0.7
3,029,683	-		CCNA_02881	0.51	-0.0
3,029,705	+		CCNA_02881	0.53	+0.2
3,029,731	+		CCNA_02881	0.54	-0.5
3,029,739	-		CCNA_02881	0.55	+0.3
3,029,772	+		CCNA_02881	0.57	+1.7
3,029,780	-		CCNA_02881	0.57	-0.3
3,029,780	-		CCNA_02881	0.57	-0.4
3,029,780	-		CCNA_02881	0.57	-0.9
3,029,791	-		CCNA_02881	0.58	-0.7
3,029,810	+		CCNA_02881	0.59	-1.9
3,029,823	-		CCNA_02881	0.60	+0.7
3,029,848	+		CCNA_02881	0.62	+0.1
3,029,878	-		CCNA_02881	0.64	-1.3
3,029,888	-		CCNA_02881	0.64	-0.5
3,029,914	-		CCNA_02881	0.66	+0.3
3,029,920	+		CCNA_02881	0.66	-0.6
3,029,945	+		CCNA_02881	0.68	-0.3
3,029,945	+		CCNA_02881	0.68	-1.8
3,029,953	-		CCNA_02881	0.68	-0.9
3,029,998	+		CCNA_02881	0.71	-1.2
3,029,998	+		CCNA_02881	0.71	-0.2
3,030,003	+		CCNA_02881	0.71	-1.7
3,030,011	-		CCNA_02881	0.72	-0.5
3,030,011	-		CCNA_02881	0.72	-2.0
3,030,024	+		CCNA_02881	0.73	-0.9
3,030,035	+		CCNA_02881	0.73	-0.2
3,030,053	-		CCNA_02881	0.75	-1.7
3,030,075	+		CCNA_02881	0.76	-0.7
3,030,091	+		CCNA_02881	0.77	-0.7
3,030,091	+		CCNA_02881	0.77	+2.3
3,030,094	-		CCNA_02881	0.77	-2.3
3,030,099	-		CCNA_02881	0.77	-0.4
3,030,132	-		CCNA_02881	0.80	+2.3
3,030,133	+		CCNA_02881	0.80	+0.4
3,030,141	-		CCNA_02881	0.80	-0.7
3,030,156	+		CCNA_02881	0.81	-0.5
3,030,158	-		CCNA_02881	0.81	-2.2
3,030,197	-		CCNA_02881	0.84	-0.3
3,030,215	+		CCNA_02881	0.85	-2.0
3,030,245	+		CCNA_02881	0.87	-0.3
3,030,253	-		CCNA_02881	0.87	-0.6
3,030,256	+		CCNA_02881	0.87	+1.3
3,030,268	+		CCNA_02881	0.88	+0.5
3,030,318	-				-1.6
3,030,347	-				+3.9
3,030,377	-				+1.3
3,030,377	-				+0.2
3,030,393	+				+2.9
3,030,401	-				-0.7
3,030,401	-				-0.1
3,030,455	+				-0.0
3,030,464	-				+0.2
3,030,492	-				-3.3
3,030,613	-				+1.0
3,030,672	-				-0.5
3,030,726	-		CCNA_02882	0.15	-1.6
3,030,738	-		CCNA_02882	0.18	-0.2
3,030,758	-		CCNA_02882	0.23	-0.5
3,030,864	-		CCNA_02882	0.49	-1.0
3,030,885	+		CCNA_02882	0.54	-0.7
3,030,921	-		CCNA_02882	0.63	-0.4
3,030,944	-		CCNA_02882	0.69	+0.9
3,030,952	+		CCNA_02882	0.71	-0.3
3,030,952	+		CCNA_02882	0.71	-1.0
3,030,952	+		CCNA_02882	0.71	-0.5
3,030,960	-		CCNA_02882	0.73	+1.3
3,030,960	-		CCNA_02882	0.73	+0.3
3,030,960	-		CCNA_02882	0.73	-1.8
3,030,960	-		CCNA_02882	0.73	+0.7
3,030,960	-		CCNA_02882	0.73	-0.0
3,031,008	+		CCNA_02882	0.85	-0.0
3,031,008	+		CCNA_02882	0.85	-0.5
3,031,008	+		CCNA_02882	0.85	+2.3
3,031,015	-		CCNA_02882	0.87	-2.3
3,031,016	-		CCNA_02882	0.87	+0.7
3,031,016	-		CCNA_02882	0.87	-2.8
3,031,016	-		CCNA_02882	0.87	-1.0
3,031,016	-		CCNA_02882	0.87	-0.8
3,031,016	-		CCNA_02882	0.87	-1.1
3,031,016	-		CCNA_02882	0.87	-2.1
3,031,028	-				+2.3
3,031,032	+				+0.1
3,031,053	-				-0.9
3,031,075	-				+2.9
3,031,093	+				-2.5
3,031,133	+				+1.3
3,031,152	-				-0.9
3,031,155	-				-2.4
3,031,162	+				-0.1
3,031,181	+				+1.3
3,031,181	+				-0.5
3,031,207	-				-0.1
3,031,215	+				+0.4
3,031,221	-				-0.2
3,031,221	-				+2.3
3,031,221	-				-1.9
3,031,226	-				+3.3
3,031,257	+		CCNA_02883	0.11	-1.2
3,031,270	-		CCNA_02883	0.12	+0.3
3,031,270	-		CCNA_02883	0.12	-0.9
3,031,305	+		CCNA_02883	0.14	-0.7
3,031,305	+		CCNA_02883	0.14	-0.4
3,031,313	-		CCNA_02883	0.14	+2.3
3,031,339	+		CCNA_02883	0.16	+0.2
3,031,371	-		CCNA_02883	0.18	-0.1
3,031,396	+		CCNA_02883	0.19	+0.7
3,031,396	+		CCNA_02883	0.19	-1.0
3,031,418	+		CCNA_02883	0.21	+1.0
3,031,438	-		CCNA_02883	0.22	-0.6
3,031,446	-		CCNA_02883	0.22	-0.5
3,031,446	-		CCNA_02883	0.22	-0.1
3,031,457	-		CCNA_02883	0.23	+2.3
3,031,508	-		CCNA_02883	0.26	+3.3
3,031,508	-		CCNA_02883	0.26	-0.9
3,031,523	-		CCNA_02883	0.27	-0.8
3,031,550	+		CCNA_02883	0.29	+2.3
3,031,556	+		CCNA_02883	0.29	-1.9
3,031,563	-		CCNA_02883	0.30	+2.6
3,031,564	-		CCNA_02883	0.30	+0.1
3,031,566	+		CCNA_02883	0.30	+0.9
3,031,566	+		CCNA_02883	0.30	-1.0
3,031,566	+		CCNA_02883	0.30	+2.3
3,031,569	-		CCNA_02883	0.30	+0.1
3,031,571	+		CCNA_02883	0.30	+0.2
3,031,571	+		CCNA_02883	0.30	-0.9
3,031,574	-		CCNA_02883	0.30	-0.0
3,031,574	-		CCNA_02883	0.30	+0.3
3,031,593	+		CCNA_02883	0.31	-0.3
3,031,619	+		CCNA_02883	0.33	+0.7
3,031,680	+		CCNA_02883	0.37	-1.9
3,031,680	+		CCNA_02883	0.37	+2.0
3,031,688	-		CCNA_02883	0.37	-0.9
3,031,688	-		CCNA_02883	0.37	-0.7
3,031,727	+		CCNA_02883	0.40	-2.7
3,031,772	+		CCNA_02883	0.42	+1.3
3,031,785	+		CCNA_02883	0.43	-1.0
3,031,827	-		CCNA_02883	0.46	+1.0
3,031,850	+		CCNA_02883	0.47	-1.3
3,031,853	-		CCNA_02883	0.47	-0.0
3,031,887	+		CCNA_02883	0.50	+1.5
3,031,887	+		CCNA_02883	0.50	+0.8
3,031,887	+		CCNA_02883	0.50	+1.3
3,031,887	+		CCNA_02883	0.50	+1.3
3,031,895	-		CCNA_02883	0.50	+1.0
3,031,901	+		CCNA_02883	0.50	+3.3
3,031,909	-		CCNA_02883	0.51	-2.1
3,031,920	+		CCNA_02883	0.52	-0.0
3,031,920	+		CCNA_02883	0.52	+0.7
3,031,920	+		CCNA_02883	0.52	-1.2
3,031,920	+		CCNA_02883	0.52	-1.5
3,031,920	+		CCNA_02883	0.52	+1.9
3,031,920	+		CCNA_02883	0.52	-0.2
3,031,922	+		CCNA_02883	0.52	-1.0
3,031,926	-		CCNA_02883	0.52	+0.7
3,031,928	-		CCNA_02883	0.52	-0.7
3,031,928	-		CCNA_02883	0.52	+2.3
3,031,928	-		CCNA_02883	0.52	-0.4
3,032,019	+		CCNA_02883	0.58	+0.7
3,032,027	-		CCNA_02883	0.58	+0.6
3,032,027	-		CCNA_02883	0.58	+0.3
3,032,027	-		CCNA_02883	0.58	+1.3
3,032,027	-		CCNA_02883	0.58	-0.3
3,032,048	-		CCNA_02883	0.59	-1.0
3,032,048	-		CCNA_02883	0.59	-2.6
3,032,055	+		CCNA_02883	0.60	+0.5
3,032,056	-		CCNA_02883	0.60	+0.8