Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02089

Experiment: PYE 30C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep3 28 days
2,236,982	-		CCNA_02087	0.53	-0.4
2,236,982	-		CCNA_02087	0.53	+1.4
2,236,982	-		CCNA_02087	0.53	+1.0
2,237,001	-		CCNA_02087	0.54	-0.6
2,237,005	-		CCNA_02087	0.55	-0.3
2,237,028	-		CCNA_02087	0.57	-0.3
2,237,041	-		CCNA_02087	0.58	+0.8
2,237,089	+		CCNA_02087	0.62	-0.9
2,237,092	-		CCNA_02087	0.62	+0.7
2,237,096	-		CCNA_02087	0.62	-0.3
2,237,108	+		CCNA_02087	0.63	-0.8
2,237,108	+		CCNA_02087	0.63	-1.0
2,237,116	-		CCNA_02087	0.64	+0.6
2,237,116	-				+1.7
2,237,126	-		CCNA_02087	0.65	+0.0
2,237,143	+		CCNA_02087	0.66	-0.2
2,237,143	+		CCNA_02087	0.66	-1.0
2,237,144	+		CCNA_02087	0.66	-0.8
2,237,144	+		CCNA_02087	0.66	+0.3
2,237,151	-		CCNA_02087	0.67	+0.5
2,237,151	-		CCNA_02087	0.67	-0.8
2,237,151	-		CCNA_02087	0.67	+0.2
2,237,152	-		CCNA_02087	0.67	-0.7
2,237,152	-		CCNA_02087	0.67	+0.3
2,237,196	+		CCNA_02087	0.71	+0.5
2,237,204	-		CCNA_02087	0.71	+1.2
2,237,205	-		CCNA_02087	0.72	+0.7
2,237,212	+		CCNA_02087	0.72	-1.5
2,237,227	+		CCNA_02087	0.73	-2.4
2,237,235	-		CCNA_02087	0.74	-0.2
2,237,235	-		CCNA_02087	0.74	+0.2
2,237,235	-		CCNA_02087	0.74	-3.6
2,237,242	-		CCNA_02087	0.75	-0.1
2,237,246	+		CCNA_02087	0.75	-1.8
2,237,252	+		CCNA_02087	0.76	-0.7
2,237,271	-		CCNA_02087	0.77	+0.2
2,237,283	-		CCNA_02087	0.78	+0.2
2,237,288	+		CCNA_02087	0.79	-2.4
2,237,319	+		CCNA_02087	0.81	-0.3
2,237,321	-		CCNA_02087	0.81	-0.8
2,237,326	+		CCNA_02087	0.82	+1.2
2,237,326	+		CCNA_02087	0.82	-0.7
2,237,334	-		CCNA_02087	0.82	+1.6
2,237,368	+		CCNA_02087	0.85	+0.4
2,237,383	-		CCNA_02087	0.87	+0.5
2,237,398	+		CCNA_02087	0.88	-2.4
2,237,439	+				+0.6
2,237,447	-				-0.4
2,237,447	-				+0.0
2,237,462	+				-0.2
2,237,463	+				+0.7
2,237,470	-				+0.3
2,237,496	+				-2.2
2,237,500	+				+3.7
2,237,531	+				-1.2
2,237,537	+				+0.2
2,237,537	+				-0.7
2,237,545	-				-1.0
2,237,575	+				-2.2
2,237,583	-				+0.2
2,237,583	-				+0.1
2,237,595	+				+1.0
2,237,599	+				-0.8
2,237,603	-				-0.2
2,237,603	-				-3.3
2,237,603	-				-1.8
2,237,603	-				-0.1
2,237,603	-				-2.4
2,237,627	+				-0.5
2,237,635	-				-1.7
2,237,635	-				-0.8
2,237,706	+		CCNA_02088	0.23	-0.2
2,237,706	+		CCNA_02088	0.23	-1.2
2,237,778	+		CCNA_02088	0.44	+2.2
2,237,974	+				-0.5
2,237,982	-				-1.7
2,238,012	+		CCNA_02089	0.12	-1.3
2,238,015	-		CCNA_02089	0.13	-4.3
2,238,015	-		CCNA_02089	0.13	-2.2
2,238,015	-		CCNA_02089	0.13	-0.1
2,238,015	-		CCNA_02089	0.13	-1.5
2,238,015	-		CCNA_02089	0.13	-2.5
2,238,020	-		CCNA_02089	0.14	-2.1
2,238,034	+		CCNA_02089	0.18	-1.1
2,238,042	-		CCNA_02089	0.20	-1.6
2,238,103	+		CCNA_02089	0.36	-0.5
2,238,103	+		CCNA_02089	0.36	-1.0
2,238,103	+		CCNA_02089	0.36	-0.8
2,238,103	+		CCNA_02089	0.36	-1.4
2,238,103	+		CCNA_02089	0.36	-0.5
2,238,103	+		CCNA_02089	0.36	-2.7
2,238,108	+		CCNA_02089	0.38	-0.5
2,238,111	-		CCNA_02089	0.38	-1.0
2,238,111	-		CCNA_02089	0.38	-3.4
2,238,111	-		CCNA_02089	0.38	-0.7
2,238,111	-		CCNA_02089	0.38	-2.2
2,238,111	-		CCNA_02089	0.38	-1.7
2,238,111	-		CCNA_02089	0.38	-2.2
2,238,111	-		CCNA_02089	0.38	+1.6
2,238,111	-		CCNA_02089	0.38	-2.0
2,238,146	+		CCNA_02089	0.48	-2.4
2,238,174	+		CCNA_02089	0.55	-1.2
2,238,174	+		CCNA_02089	0.55	-1.7
2,238,174	+		CCNA_02089	0.55	+0.3
2,238,177	-		CCNA_02089	0.56	-2.0
2,238,182	-		CCNA_02089	0.57	-2.2
2,238,182	-		CCNA_02089	0.57	-2.5
2,238,182	-		CCNA_02089	0.57	-3.8
2,238,182	-		CCNA_02089	0.57	-1.4
2,238,200	-		CCNA_02089	0.62	-2.7
2,238,298	+		CCNA_02089	0.88	-0.0
2,238,298	+		CCNA_02089	0.88	-1.0
2,238,298	+		CCNA_02089	0.88	-0.4
2,238,298	+		CCNA_02089	0.88	+0.7
2,238,298	+		CCNA_02089	0.88	-1.0
2,238,421	+		CCNA_02090	0.10	-1.5
2,238,427	-		CCNA_02090	0.11	-0.7
2,238,450	-		CCNA_02090	0.14	-1.2
2,238,568	+		CCNA_02090	0.29	-0.2
2,238,578	-		CCNA_02090	0.30	-1.1
2,238,660	-		CCNA_02090	0.40	-0.8
2,238,684	-		CCNA_02090	0.43	+0.1
2,238,704	-		CCNA_02090	0.46	-1.6
2,238,704	-		CCNA_02090	0.46	+2.2
2,238,704	-		CCNA_02090	0.46	+0.4
2,238,719	-		CCNA_02090	0.48	-1.9
2,238,744	+		CCNA_02090	0.51	-0.7
2,238,748	+		CCNA_02090	0.52	+0.0
2,238,748	+		CCNA_02090	0.52	+1.7
2,238,756	-				-1.7
2,238,758	+		CCNA_02090	0.53	-0.1
2,238,859	+		CCNA_02090	0.66	-1.0
2,238,859	+		CCNA_02090	0.66	-0.3
2,238,867	-		CCNA_02090	0.67	-1.5
2,238,881	+		CCNA_02090	0.68	+0.2
2,238,883	+		CCNA_02090	0.69	+0.2
2,238,889	-		CCNA_02090	0.69	+0.7
2,238,889	-		CCNA_02090	0.69	-1.3
2,238,918	+		CCNA_02090	0.73	-0.7
2,238,918	+		CCNA_02090	0.73	+1.1
2,238,926	-		CCNA_02090	0.74	-0.9
2,239,048	-		CCNA_02090	0.90	-0.3
2,239,133	-				-2.3
2,239,159	+				+0.8
2,239,159	+				-0.5
2,239,159	+				+1.5
2,239,159	+				-0.5
2,239,159	+				-0.9
2,239,159	+				+0.2
2,239,159	+				+0.2
2,239,159	+				-1.0
2,239,159	+				-1.0
2,239,159	+				+0.8
2,239,159	+				-0.2
2,239,159	+				-0.2
2,239,159	+				-0.3
2,239,159	+				-1.0
2,239,159	+				+0.6
2,239,159	+				-0.2
2,239,159	+				-1.8
2,239,165	+				+0.1
2,239,167	-				-1.5
2,239,167	-				-1.5
2,239,167	-				-0.8
2,239,167	-				-0.4
2,239,167	-				-0.9
2,239,167	-				+2.2
2,239,167	-				-0.4
2,239,167	-				+1.2
2,239,167	-				-1.8
2,239,167	-				-1.0
2,239,167	-				-2.8
2,239,167	-				-0.1
2,239,167	-				-1.2
2,239,226	+				-0.7
2,239,234	-				-1.0
2,239,234	-				+1.2
2,239,235	+				-0.0
2,239,292	+		CCNA_02091	0.12	+0.0
2,239,301	+		CCNA_02091	0.13	-0.5
2,239,301	+		CCNA_02091	0.13	+0.5
2,239,309	-		CCNA_02091	0.14	-0.9
2,239,341	+		CCNA_02091	0.18	+0.8
2,239,341	+		CCNA_02091	0.18	+1.3