Experiment: PYE 30C survival rep3 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00467 and CCNA_00468 are separated by 109 nucleotides CCNA_00468 and CCNA_00469 are separated by 297 nucleotides
CCNA_00467: CCNA_00467 - oligosaccharide translocase/flippase, at 480,439 to 481,710
_00467
CCNA_00468: CCNA_00468 - UDP glucuronic acid epimerase-related protein, at 481,820 to 481,933
_00468
CCNA_00469: CCNA_00469 - GT1-family glycosyltransferase, at 482,231 to 483,454
_00469
Position (kb) 481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.664 kb on + strand at 481.666 kb on - strand at 481.672 kb on - strand at 481.689 kb on + strand at 481.691 kb on + strand at 481.704 kb on + strand at 481.704 kb on + strand at 481.704 kb on + strand at 481.704 kb on + strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.712 kb on - strand at 481.722 kb on - strand at 481.733 kb on - strand at 481.793 kb on - strand at 481.796 kb on + strand at 481.796 kb on + strand at 481.804 kb on - strand at 481.804 kb on - strand at 481.817 kb on + strand at 481.825 kb on + strand at 481.825 kb on + strand at 481.833 kb on - strand, within CCNA_00468 at 481.842 kb on + strand, within CCNA_00468 at 481.842 kb on + strand, within CCNA_00468 at 481.842 kb on + strand, within CCNA_00468 at 481.850 kb on - strand, within CCNA_00468 at 481.850 kb on - strand, within CCNA_00468 at 481.865 kb on - strand, within CCNA_00468 at 481.879 kb on - strand, within CCNA_00468 at 481.880 kb on + strand, within CCNA_00468 at 481.880 kb on + strand, within CCNA_00468 at 481.881 kb on + strand, within CCNA_00468 at 481.896 kb on + strand, within CCNA_00468 at 481.930 kb on + strand at 481.934 kb on - strand at 481.944 kb on - strand at 481.945 kb on - strand at 481.996 kb on + strand at 482.004 kb on - strand at 482.004 kb on - strand at 482.004 kb on - strand at 482.013 kb on + strand at 482.042 kb on - strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.103 kb on + strand at 482.111 kb on - strand at 482.111 kb on - strand at 482.111 kb on - strand at 482.132 kb on + strand at 482.138 kb on - strand at 482.227 kb on - strand at 482.229 kb on + strand at 482.234 kb on + strand at 482.244 kb on + strand at 482.244 kb on + strand at 482.244 kb on + strand at 482.252 kb on - strand at 482.252 kb on - strand at 482.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep3 28 days remove 481,664 + +1.5 481,664 + +1.1 481,664 + +1.0 481,664 + +1.4 481,664 + +1.0 481,664 + +0.9 481,664 + +1.2 481,664 + +0.8 481,664 + -2.9 481,666 - +1.9 481,672 - +0.2 481,689 + +1.6 481,691 + +0.6 481,704 + +0.5 481,704 + +0.0 481,704 + -0.0 481,704 + +1.2 481,712 - +0.6 481,712 - +0.6 481,712 - +0.2 481,712 - +0.2 481,712 - +0.2 481,712 - -0.5 481,722 - +0.9 481,733 - +1.1 481,793 - +0.9 481,796 + +0.8 481,796 + +0.4 481,804 - +1.0 481,804 - +1.3 481,817 + +0.6 481,825 + +1.0 481,825 + +0.5 481,833 - CCNA_00468 0.11 +1.0 481,842 + CCNA_00468 0.19 +1.3 481,842 + CCNA_00468 0.19 +1.0 481,842 + CCNA_00468 0.19 +1.3 481,850 - CCNA_00468 0.26 +0.3 481,850 - CCNA_00468 0.26 +1.5 481,865 - CCNA_00468 0.39 +1.0 481,879 - CCNA_00468 0.52 +0.4 481,880 + CCNA_00468 0.53 +0.3 481,880 + CCNA_00468 0.53 +1.0 481,881 + CCNA_00468 0.54 +1.4 481,896 + CCNA_00468 0.67 -0.0 481,930 + +0.3 481,934 - +0.6 481,944 - +1.8 481,945 - +0.2 481,996 + +0.8 482,004 - +0.6 482,004 - -0.8 482,004 - +0.1 482,013 + +1.2 482,042 - +0.7 482,103 + -0.7 482,103 + -0.2 482,103 + +1.0 482,103 + +0.9 482,103 + +1.0 482,103 + +0.2 482,103 + +0.8 482,103 + -0.2 482,103 + +1.1 482,111 - +0.8 482,111 - +1.2 482,111 - -0.1 482,132 + -0.6 482,138 - +0.5 482,227 - +1.4 482,229 + +0.7 482,234 + +1.0 482,244 + +0.4 482,244 + +1.3 482,244 + +0.3 482,252 - +1.3 482,252 - +1.3 482,252 - +0.0
Or see this region's nucleotide sequence