Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00148

Experiment: PYE 30C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00145 and CCNA_00146 are separated by 24 nucleotidesCCNA_00146 and CCNA_00147 are separated by 167 nucleotidesCCNA_00147 and CCNA_00148 are separated by 75 nucleotidesCCNA_00148 and CCNA_00149 are separated by 16 nucleotidesCCNA_00149 and CCNA_00150 overlap by 4 nucleotides CCNA_00145: CCNA_00145 - xanthosine triphosphate pyrophosphatase, at 156,966 to 157,568 _00145 CCNA_00146: CCNA_00146 - glutathione S-transferase, at 157,593 to 158,186 _00146 CCNA_00147: CCNA_00147 - hypothetical protein, at 158,354 to 158,470 _00147 CCNA_00148: CCNA_00148 - hypothetical protein, at 158,546 to 159,079 _00148 CCNA_00149: CCNA_00149 - Cro/CI-family transcriptional regulator, at 159,096 to 159,323 _00149 CCNA_00150: CCNA_00150 - PDZ domain family protein, at 159,320 to 160,297 _00150 Position (kb) 158 159 160Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 157.550 kb on + strandat 157.550 kb on + strandat 157.681 kb on - strand, within CCNA_00146at 157.695 kb on - strand, within CCNA_00146at 157.705 kb on - strand, within CCNA_00146at 157.741 kb on - strand, within CCNA_00146at 157.748 kb on - strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.775 kb on + strand, within CCNA_00146at 157.781 kb on - strand, within CCNA_00146at 157.814 kb on + strand, within CCNA_00146at 157.814 kb on + strand, within CCNA_00146at 157.860 kb on + strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.887 kb on + strand, within CCNA_00146at 157.902 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.956 kb on - strand, within CCNA_00146at 157.956 kb on - strand, within CCNA_00146at 157.965 kb on + strand, within CCNA_00146at 157.978 kb on - strand, within CCNA_00146at 158.016 kb on - strand, within CCNA_00146at 158.071 kb on + strand, within CCNA_00146at 158.079 kb on - strand, within CCNA_00146at 158.124 kb on + strand, within CCNA_00146at 158.128 kb on + strandat 158.139 kb on + strandat 158.147 kb on - strandat 158.149 kb on - strandat 158.172 kb on - strandat 158.174 kb on + strandat 158.181 kb on + strandat 158.181 kb on + strandat 158.189 kb on - strandat 158.194 kb on - strandat 158.291 kb on + strandat 158.294 kb on - strandat 158.299 kb on - strandat 158.299 kb on - strandat 158.309 kb on - strandat 158.334 kb on + strandat 158.366 kb on + strand, within CCNA_00147at 158.434 kb on + strand, within CCNA_00147at 158.463 kb on + strandat 158.463 kb on + strandat 158.464 kb on - strandat 158.465 kb on + strandat 158.465 kb on + strandat 158.465 kb on + strandat 158.465 kb on + strandat 158.471 kb on - strandat 158.471 kb on - strandat 158.492 kb on - strandat 158.492 kb on - strandat 158.517 kb on + strandat 158.532 kb on + strandat 158.553 kb on + strandat 158.553 kb on + strandat 158.553 kb on + strandat 158.602 kb on + strand, within CCNA_00148at 158.620 kb on - strand, within CCNA_00148at 158.652 kb on - strand, within CCNA_00148at 158.668 kb on - strand, within CCNA_00148at 158.670 kb on + strand, within CCNA_00148at 158.670 kb on - strand, within CCNA_00148at 158.673 kb on - strand, within CCNA_00148at 158.707 kb on + strand, within CCNA_00148at 158.738 kb on + strand, within CCNA_00148at 158.764 kb on + strand, within CCNA_00148at 158.772 kb on - strand, within CCNA_00148at 158.774 kb on + strand, within CCNA_00148at 158.813 kb on + strand, within CCNA_00148at 158.819 kb on + strand, within CCNA_00148at 158.889 kb on - strand, within CCNA_00148at 158.901 kb on + strand, within CCNA_00148at 158.956 kb on + strand, within CCNA_00148at 158.957 kb on + strand, within CCNA_00148at 158.964 kb on - strand, within CCNA_00148at 158.982 kb on - strand, within CCNA_00148at 159.076 kb on - strandat 159.078 kb on + strandat 159.078 kb on + strandat 159.111 kb on + strandat 159.119 kb on - strand, within CCNA_00149at 159.124 kb on + strand, within CCNA_00149at 159.132 kb on - strand, within CCNA_00149at 159.166 kb on - strand, within CCNA_00149at 159.188 kb on + strand, within CCNA_00149at 159.196 kb on - strand, within CCNA_00149at 159.203 kb on - strand, within CCNA_00149at 159.227 kb on + strand, within CCNA_00149at 159.227 kb on + strand, within CCNA_00149at 159.227 kb on + strand, within CCNA_00149at 159.230 kb on - strand, within CCNA_00149at 159.266 kb on - strand, within CCNA_00149at 159.279 kb on + strand, within CCNA_00149at 159.345 kb on + strandat 159.346 kb on + strandat 159.346 kb on + strandat 159.354 kb on - strandat 159.354 kb on - strandat 159.370 kb on + strandat 159.391 kb on - strandat 159.402 kb on + strandat 159.520 kb on - strand, within CCNA_00150at 159.531 kb on + strand, within CCNA_00150at 159.536 kb on + strand, within CCNA_00150at 159.613 kb on + strand, within CCNA_00150at 159.613 kb on + strand, within CCNA_00150at 159.619 kb on + strand, within CCNA_00150at 159.621 kb on - strand, within CCNA_00150at 159.651 kb on + strand, within CCNA_00150at 159.683 kb on - strand, within CCNA_00150at 159.721 kb on - strand, within CCNA_00150at 159.756 kb on + strand, within CCNA_00150at 159.758 kb on - strand, within CCNA_00150at 159.761 kb on + strand, within CCNA_00150at 159.769 kb on - strand, within CCNA_00150at 159.769 kb on - strand, within CCNA_00150at 159.769 kb on - strand, within CCNA_00150at 159.769 kb on - strand, within CCNA_00150at 159.776 kb on + strand, within CCNA_00150at 159.809 kb on - strand, within CCNA_00150at 159.821 kb on + strand, within CCNA_00150at 159.874 kb on - strand, within CCNA_00150at 159.978 kb on + strand, within CCNA_00150at 159.990 kb on - strand, within CCNA_00150at 159.995 kb on + strand, within CCNA_00150at 160.013 kb on + strand, within CCNA_00150at 160.018 kb on + strand, within CCNA_00150at 160.026 kb on - strand, within CCNA_00150at 160.026 kb on - strand, within CCNA_00150at 160.056 kb on + strand, within CCNA_00150

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep3 28 days
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157,550 + +0.7
157,550 + -1.5
157,681 - CCNA_00146 0.15 +0.3
157,695 - CCNA_00146 0.17 -2.3
157,705 - CCNA_00146 0.19 -1.7
157,741 - CCNA_00146 0.25 -0.9
157,748 - CCNA_00146 0.26 -0.4
157,773 + CCNA_00146 0.30 -1.2
157,773 + CCNA_00146 0.30 -0.2
157,773 + CCNA_00146 0.30 -0.6
157,775 + CCNA_00146 0.31 -1.5
157,781 - CCNA_00146 0.32 -0.7
157,814 + CCNA_00146 0.37 -1.4
157,814 + CCNA_00146 0.37 -1.0
157,860 + CCNA_00146 0.45 -1.0
157,868 - CCNA_00146 0.46 -0.4
157,868 - CCNA_00146 0.46 -1.9
157,868 - CCNA_00146 0.46 -0.3
157,868 - CCNA_00146 0.46 -1.6
157,868 - CCNA_00146 0.46 -1.2
157,887 + CCNA_00146 0.49 -0.9
157,902 + CCNA_00146 0.52 -0.1
157,948 + CCNA_00146 0.60 -1.4
157,948 + CCNA_00146 0.60 -0.4
157,948 + CCNA_00146 0.60 -1.1
157,956 - CCNA_00146 0.61 -1.7
157,956 - CCNA_00146 0.61 -3.1
157,965 + CCNA_00146 0.63 -0.8
157,978 - CCNA_00146 0.65 -0.4
158,016 - CCNA_00146 0.71 +0.3
158,071 + CCNA_00146 0.80 -0.4
158,079 - CCNA_00146 0.82 -0.5
158,124 + CCNA_00146 0.89 +0.2
158,128 + -0.2
158,139 + -2.0
158,147 - -1.3
158,149 - -0.9
158,172 - -2.2
158,174 + -0.2
158,181 + -0.3
158,181 + +0.1
158,189 - +0.2
158,194 - -1.0
158,291 + -1.9
158,294 - -1.2
158,299 - -0.2
158,299 - -1.3
158,309 - -3.1
158,334 + -1.2
158,366 + CCNA_00147 0.10 +0.1
158,434 + CCNA_00147 0.68 -0.4
158,463 + -0.7
158,463 + -0.3
158,464 - -3.0
158,465 + +0.1
158,465 + -0.5
158,465 + -0.4
158,465 + +0.1
158,471 - -1.7
158,471 - -3.4
158,492 - -4.2
158,492 - +0.4
158,517 + -1.6
158,532 + -0.9
158,553 + +0.0
158,553 + -1.2
158,553 + -0.2
158,602 + CCNA_00148 0.10 -0.0
158,620 - CCNA_00148 0.14 -3.7
158,652 - CCNA_00148 0.20 -2.7
158,668 - CCNA_00148 0.23 -3.6
158,670 + CCNA_00148 0.23 -0.8
158,670 - CCNA_00148 0.23 -2.8
158,673 - CCNA_00148 0.24 -2.3
158,707 + CCNA_00148 0.30 -1.6
158,738 + CCNA_00148 0.36 -0.8
158,764 + CCNA_00148 0.41 -0.7
158,772 - CCNA_00148 0.42 -3.9
158,774 + CCNA_00148 0.43 -0.8
158,813 + CCNA_00148 0.50 -0.8
158,819 + CCNA_00148 0.51 -2.2
158,889 - CCNA_00148 0.64 -3.8
158,901 + CCNA_00148 0.66 -0.5
158,956 + CCNA_00148 0.77 -0.4
158,957 + CCNA_00148 0.77 -1.1
158,964 - CCNA_00148 0.78 -3.5
158,982 - CCNA_00148 0.82 +1.2
159,076 - -2.1
159,078 + -0.7
159,078 + -0.6
159,111 + +0.3
159,119 - CCNA_00149 0.10 -2.2
159,124 + CCNA_00149 0.12 -0.3
159,132 - CCNA_00149 0.16 -3.7
159,166 - CCNA_00149 0.31 -2.5
159,188 + CCNA_00149 0.40 -0.8
159,196 - CCNA_00149 0.44 -1.9
159,203 - CCNA_00149 0.47 -3.3
159,227 + CCNA_00149 0.57 -0.5
159,227 + CCNA_00149 0.57 -1.1
159,227 + CCNA_00149 0.57 -1.2
159,230 - CCNA_00149 0.59 -3.6
159,266 - CCNA_00149 0.75 -2.4
159,279 + CCNA_00149 0.80 -4.0
159,345 + -0.1
159,346 + +1.3
159,346 + +0.2
159,354 - -0.7
159,354 - -0.4
159,370 + -1.0
159,391 - -1.4
159,402 + +0.2
159,520 - CCNA_00150 0.20 -0.8
159,531 + CCNA_00150 0.22 -1.6
159,536 + CCNA_00150 0.22 -0.3
159,613 + CCNA_00150 0.30 +1.0
159,613 + CCNA_00150 0.30 -1.8
159,619 + CCNA_00150 0.31 -0.6
159,621 - CCNA_00150 0.31 -1.1
159,651 + CCNA_00150 0.34 +0.0
159,683 - CCNA_00150 0.37 +0.0
159,721 - CCNA_00150 0.41 -2.0
159,756 + CCNA_00150 0.45 -2.0
159,758 - CCNA_00150 0.45 +0.4
159,761 + CCNA_00150 0.45 -0.7
159,769 - CCNA_00150 0.46 +0.0
159,769 - CCNA_00150 0.46 -0.8
159,769 - CCNA_00150 0.46 -0.6
159,769 - CCNA_00150 0.46 +0.3
159,776 + CCNA_00150 0.47 +0.2
159,809 - CCNA_00150 0.50 +1.3
159,821 + CCNA_00150 0.51 -0.3
159,874 - CCNA_00150 0.57 -0.6
159,978 + CCNA_00150 0.67 -2.2
159,990 - CCNA_00150 0.69 +0.9
159,995 + CCNA_00150 0.69 -1.1
160,013 + CCNA_00150 0.71 -1.4
160,018 + CCNA_00150 0.71 +1.2
160,026 - CCNA_00150 0.72 -0.3
160,026 - CCNA_00150 0.72 +0.0
160,056 + CCNA_00150 0.75 -0.4

Or see this region's nucleotide sequence