Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3220

Experiment: Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%
4,110,577	+				+1.0
4,110,577	+				-1.3
4,110,584	+				-1.2
4,110,585	-				+0.4
4,110,593	+				-2.1
4,110,605	-				-1.8
4,110,629	-				-1.9
4,110,680	-				-0.8
4,110,682	-				-0.9
4,110,687	-				+1.0
4,110,687	-				+1.0
4,110,731	-				+2.6
4,110,739	+				-1.5
4,110,739	+				-0.9
4,110,752	+				+1.0
4,110,775	-				+0.3
4,110,805	+				+0.0
4,110,810	+				-0.7
4,110,810	+				-1.7
4,110,811	-				-1.5
4,110,815	+				-0.6
4,110,816	-				-1.2
4,110,819	-				-0.9
4,110,819	-				+1.0
4,110,903	+				+0.3
4,110,967	+				-2.9
4,110,968	-				+0.3
4,111,017	+				+1.0
4,111,146	+				-0.9
4,111,147	-				-1.8
4,111,165	-				+0.1
4,111,207	-				+1.0
4,111,208	+				-1.9
4,111,208	+				-4.2
4,111,209	-				-0.6
4,111,227	+				-1.8
4,111,258	-				-1.0
4,111,263	-				-0.9
4,111,335	+				-0.6
4,111,427	-				-1.1
4,111,427	-				-1.6
4,111,630	+				-2.4
4,111,631	-				+1.0
4,111,663	+				-2.8
4,111,684	+				-1.8
4,111,685	-				+1.0
4,111,685	-				-2.5
4,111,741	+				-3.1
4,111,771	+		BT3220	0.11	-4.3
4,111,772	-		BT3220	0.11	-3.1
4,111,799	+		BT3220	0.13	-2.4
4,111,800	-		BT3220	0.13	-1.6
4,111,810	-		BT3220	0.13	-0.6
4,111,883	+		BT3220	0.18	-2.5
4,111,889	+		BT3220	0.18	-1.0
4,111,905	+		BT3220	0.19	-2.9
4,111,991	-		BT3220	0.24	-2.7
4,112,083	+		BT3220	0.29	-1.6
4,112,084	-		BT3220	0.29	+1.0
4,112,148	+		BT3220	0.33	+0.0
4,112,164	-		BT3220	0.34	-2.0
4,112,326	+		BT3220	0.43	-2.6
4,112,326	+		BT3220	0.43	+1.6
4,112,356	-		BT3220	0.45	-1.9
4,112,358	-		BT3220	0.45	-0.6
4,112,370	-		BT3220	0.46	-2.2
4,112,374	+		BT3220	0.46	-1.8
4,112,451	+		BT3220	0.50	+0.0
4,112,452	-		BT3220	0.50	-2.9
4,112,455	-		BT3220	0.51	-0.6
4,112,510	-		BT3220	0.54	-0.5
4,112,539	+		BT3220	0.55	+1.0
4,112,566	-		BT3220	0.57	-2.3
4,112,619	-		BT3220	0.60	+0.0
4,112,619	-		BT3220	0.60	-1.3
4,112,676	+		BT3220	0.63	-2.2
4,112,699	+		BT3220	0.65	-1.6
4,112,700	-		BT3220	0.65	+0.4
4,112,702	+		BT3220	0.65	-1.7
4,112,705	+		BT3220	0.65	-2.0
4,112,765	+		BT3220	0.68	-1.6
4,112,775	+		BT3220	0.69	+2.0
4,112,775	+		BT3220	0.69	+0.0
4,112,797	+		BT3220	0.70	-1.0
4,112,802	-		BT3220	0.71	+0.1
4,112,831	-		BT3220	0.72	+1.0
4,112,900	+		BT3220	0.76	-1.0
4,112,923	-		BT3220	0.78	+0.0
4,112,993	+		BT3220	0.82	-3.6
4,112,996	+		BT3220	0.82	-0.6
4,112,999	+		BT3220	0.82	-0.6
4,113,038	+		BT3220	0.84	-2.1
4,113,041	+		BT3220	0.84	-1.5
4,113,041	+		BT3220	0.84	+1.0
4,113,061	+		BT3220	0.85	-2.0
4,113,062	-		BT3220	0.86	-1.3
4,113,075	+		BT3220	0.86	-0.6
4,113,075	+		BT3220	0.86	-1.9
4,113,076	-		BT3220	0.86	-2.8
4,113,109	+		BT3220	0.88	-2.7
4,113,109	+		BT3220	0.88	+0.4
4,113,122	+		BT3220	0.89	-1.6
4,113,122	+		BT3220	0.89	-1.3
4,113,192	+				-1.4
4,113,213	+				-0.9
4,113,214	-				-4.2
4,113,268	+				+0.4
4,113,268	+				-1.0
4,113,268	+				-1.5
4,113,268	+				-0.8
4,113,269	-				+1.0
4,113,270	+				-2.2
4,113,270	+				-2.0
4,113,271	-				-3.0
4,113,281	+				-2.7
4,113,350	+				-1.1
4,113,351	-				+1.0
4,113,352	+				-1.2
4,113,358	+				-1.7
4,113,358	+				-0.9
4,113,359	-				-0.7
4,113,359	-				-1.2
4,113,359	-				+1.0
4,113,359	-				-1.8
4,113,360	-				-0.7
4,113,361	-				+0.8
4,113,370	+				-0.9
4,113,371	-				-2.3
4,113,377	+				+0.5
4,113,377	+				+0.1
4,113,389	+				-1.1
4,113,393	-				+0.0
4,113,395	-				+2.0
4,113,423	-		BT3221	0.15	-1.2
4,113,424	+		BT3221	0.15	-0.7
4,113,440	+		BT3221	0.20	+0.0
4,113,440	+		BT3221	0.20	-0.0
4,113,457	-		BT3221	0.24	-0.9
4,113,470	+		BT3221	0.28	+0.3
4,113,479	+		BT3221	0.30	-0.8
4,113,485	+		BT3221	0.32	-1.3
4,113,485	+		BT3221	0.32	+1.7
4,113,486	-		BT3221	0.32	-2.6
4,113,486	-		BT3221	0.32	-1.5
4,113,492	+		BT3221	0.34	+0.0
4,113,493	-		BT3221	0.34	-0.9
4,113,493	-		BT3221	0.34	+0.0
4,113,497	-		BT3221	0.35	-1.3
4,113,500	+		BT3221	0.36	-1.6
4,113,554	+		BT3221	0.51	-1.1
4,113,554	+		BT3221	0.51	+1.6
4,113,554	+		BT3221	0.51	-1.7
4,113,555	-		BT3221	0.51	-1.8
4,113,564	-		BT3221	0.54	-1.8
4,113,572	+		BT3221	0.56	-2.3
4,113,583	+		BT3221	0.59	-0.9
4,113,584	-		BT3221	0.59	+1.0
4,113,602	+		BT3221	0.64	-1.4
4,113,607	-		BT3221	0.66	+0.0
4,113,607	-		BT3221	0.66	-2.6
4,113,630	+		BT3221	0.72	+0.4
4,113,668	+		BT3221	0.82	-3.6
4,113,690	+		BT3221	0.88	-0.7
4,113,694	-		BT3221	0.90	+1.0
4,113,711	-				-0.3
4,113,767	-				-1.5
4,113,783	-				-1.3
4,113,783	-				-0.6
4,113,785	+				+0.6
4,113,835	-				-1.6
4,113,864	+				+0.8
4,113,872	+				+1.0
4,113,882	-				-2.0
4,113,903	-				-2.0
4,113,945	+				+0.0
4,113,990	+				-0.4
4,114,001	+				-3.8
4,114,085	-				-1.5
4,114,103	+				-1.0
4,114,127	+				-2.0
4,114,159	+		BT3222	0.12	-0.2
4,114,178	+		BT3222	0.14	-0.4
4,114,178	+		BT3222	0.14	+0.4
4,114,181	+		BT3222	0.15	+1.0
4,114,182	-		BT3222	0.15	-0.8
4,114,244	+		BT3222	0.21	-1.8
4,114,259	+		BT3222	0.23	+0.0