Experiment: Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0428 and BT0429 are separated by 11 nucleotides BT0429 and BT0430 are separated by 3 nucleotides
BT0428: BT0428 - phenylacetate-coenzyme A ligase (NCBI ptt file), at 514,550 to 515,857
BT0428
BT0429: BT0429 - indolepyruvate oxidoreductase subunit iorB (NCBI ptt file), at 515,869 to 516,453
BT0429
BT0430: BT0430 - indolepyruvate oxidoreductase subunit iorA (NCBI ptt file), at 516,457 to 518,049
BT0430
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 514.935 kb on - strand, within BT0428 at 514.994 kb on - strand, within BT0428 at 515.067 kb on + strand, within BT0428 at 515.153 kb on - strand, within BT0428 at 515.156 kb on - strand, within BT0428 at 515.158 kb on - strand, within BT0428 at 515.158 kb on - strand, within BT0428 at 515.261 kb on - strand, within BT0428 at 515.298 kb on + strand, within BT0428 at 515.315 kb on + strand, within BT0428 at 515.330 kb on - strand, within BT0428 at 515.363 kb on - strand, within BT0428 at 515.558 kb on - strand, within BT0428 at 515.594 kb on + strand, within BT0428 at 515.702 kb on - strand, within BT0428 at 515.702 kb on - strand, within BT0428 at 515.705 kb on - strand, within BT0428 at 515.746 kb on - strand at 515.866 kb on + strand at 515.867 kb on - strand at 515.870 kb on + strand at 515.917 kb on - strand at 516.091 kb on - strand, within BT0429 at 516.118 kb on + strand, within BT0429 at 516.207 kb on - strand, within BT0429 at 516.360 kb on - strand, within BT0429 at 516.391 kb on - strand, within BT0429 at 516.437 kb on - strand at 516.439 kb on - strand at 516.463 kb on - strand at 516.924 kb on + strand, within BT0430 at 516.935 kb on + strand, within BT0430 at 516.968 kb on + strand, within BT0430 at 516.969 kb on - strand, within BT0430 at 516.973 kb on - strand, within BT0430 at 516.973 kb on - strand, within BT0430 at 517.087 kb on + strand, within BT0430 at 517.106 kb on - strand, within BT0430 at 517.151 kb on + strand, within BT0430 at 517.363 kb on + strand, within BT0430 at 517.367 kb on + strand, within BT0430 at 517.368 kb on - strand, within BT0430
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant medium with Dimethyl Sulfoxide 2 vol% remove 514,935 - BT0428 0.29 +0.9 514,994 - BT0428 0.34 +0.3 515,067 + BT0428 0.40 -0.5 515,153 - BT0428 0.46 -2.1 515,156 - BT0428 0.46 -2.5 515,158 - BT0428 0.46 -2.4 515,158 - BT0428 0.46 +0.0 515,261 - BT0428 0.54 -1.3 515,298 + BT0428 0.57 -1.4 515,315 + BT0428 0.58 -1.7 515,330 - BT0428 0.60 -0.3 515,363 - BT0428 0.62 -2.6 515,558 - BT0428 0.77 -0.1 515,594 + BT0428 0.80 -1.4 515,702 - BT0428 0.88 +1.5 515,702 - BT0428 0.88 -1.1 515,705 - BT0428 0.88 +0.9 515,746 - -1.3 515,866 + -2.4 515,867 - -1.3 515,870 + -1.4 515,917 - -0.7 516,091 - BT0429 0.38 -2.8 516,118 + BT0429 0.43 -0.7 516,207 - BT0429 0.58 +0.9 516,360 - BT0429 0.84 -1.9 516,391 - BT0429 0.89 +0.9 516,437 - -1.6 516,439 - -1.4 516,463 - +0.3 516,924 + BT0430 0.29 +0.9 516,935 + BT0430 0.30 -0.9 516,968 + BT0430 0.32 -1.9 516,969 - BT0430 0.32 +0.9 516,973 - BT0430 0.32 -1.6 516,973 - BT0430 0.32 -2.6 517,087 + BT0430 0.40 -0.1 517,106 - BT0430 0.41 +1.9 517,151 + BT0430 0.44 -1.4 517,363 + BT0430 0.57 +1.5 517,367 + BT0430 0.57 -0.7 517,368 - BT0430 0.57 -1.9
Or see this region's nucleotide sequence