Strain Fitness in Pantoea sp. MT58 around IAI47_17065

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_17055 and IAI47_17060 overlap by 4 nucleotidesIAI47_17060 and IAI47_17065 are separated by 79 nucleotidesIAI47_17065 and IAI47_17070 are separated by 113 nucleotidesIAI47_17070 and IAI47_17075 are separated by 127 nucleotides IAI47_17055: IAI47_17055 - phosphoglucosamine mutase, at 3,616,956 to 3,618,290 _17055 IAI47_17060: IAI47_17060 - dihydropteroate synthase, at 3,618,287 to 3,619,126 _17060 IAI47_17065: IAI47_17065 - ATP-dependent zinc metalloprotease FtsH, at 3,619,206 to 3,621,131 _17065 IAI47_17070: IAI47_17070 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 3,621,245 to 3,621,874 _17070 IAI47_17075: IAI47_17075 - ribosome assembly RNA-binding protein YhbY, at 3,622,002 to 3,622,295 _17075 Position (kb) 3619 3620 3621 3622Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3619.150 kb on + strandat 3619.150 kb on + strandat 3619.150 kb on + strandat 3619.160 kb on + strandat 3619.160 kb on + strandat 3619.161 kb on - strandat 3619.161 kb on - strandat 3619.161 kb on - strandat 3619.207 kb on + strandat 3619.208 kb on - strandat 3619.208 kb on - strandat 3619.208 kb on - strandat 3619.208 kb on - strandat 3619.208 kb on - strandat 3619.208 kb on - strandat 3619.208 kb on - strandat 3619.208 kb on - strandat 3619.216 kb on + strandat 3619.216 kb on + strandat 3619.217 kb on - strandat 3619.217 kb on - strandat 3619.217 kb on - strandat 3619.232 kb on + strandat 3619.233 kb on - strandat 3619.233 kb on - strandat 3619.287 kb on - strandat 3619.287 kb on - strandat 3619.296 kb on - strandat 3621.176 kb on - strandat 3621.176 kb on - strandat 3621.176 kb on - strandat 3621.186 kb on - strandat 3621.189 kb on - strandat 3621.189 kb on - strandat 3621.189 kb on - strandat 3621.189 kb on - strandat 3621.189 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.191 kb on - strandat 3621.202 kb on - strandat 3621.202 kb on - strandat 3621.202 kb on - strandat 3621.202 kb on - strandat 3621.202 kb on - strandat 3621.202 kb on - strandat 3621.248 kb on + strandat 3621.249 kb on - strandat 3621.249 kb on - strandat 3621.907 kb on - strandat 3621.943 kb on - strandat 3621.943 kb on - strandat 3621.943 kb on - strandat 3621.960 kb on - strandat 3621.991 kb on - strandat 3622.014 kb on - strandat 3622.014 kb on - strandat 3622.014 kb on - strandat 3622.068 kb on - strand, within IAI47_17075

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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3,619,150 + +0.2
3,619,150 + +2.2
3,619,150 + +0.3
3,619,160 + +1.6
3,619,160 + -1.0
3,619,161 - +3.0
3,619,161 - -1.3
3,619,161 - -2.9
3,619,207 + -1.0
3,619,208 - -0.3
3,619,208 - +0.2
3,619,208 - +0.3
3,619,208 - -1.7
3,619,208 - +0.9
3,619,208 - -0.0
3,619,208 - -0.5
3,619,208 - +0.8
3,619,216 + -0.4
3,619,216 + -1.9
3,619,217 - -0.7
3,619,217 - -1.3
3,619,217 - +0.7
3,619,232 + -1.1
3,619,233 - -0.5
3,619,233 - +2.0
3,619,287 - -1.6
3,619,287 - -0.3
3,619,296 - +0.4
3,621,176 - -0.1
3,621,176 - -2.1
3,621,176 - -0.2
3,621,186 - -3.4
3,621,189 - -0.1
3,621,189 - -1.9
3,621,189 - -2.5
3,621,189 - -2.9
3,621,189 - -2.3
3,621,191 - +0.7
3,621,191 - -2.5
3,621,191 - -0.5
3,621,191 - +1.2
3,621,191 - -1.8
3,621,191 - -2.3
3,621,191 - -1.7
3,621,191 - -1.6
3,621,191 - -0.7
3,621,191 - -2.3
3,621,191 - -1.4
3,621,202 - +0.0
3,621,202 - -0.7
3,621,202 - +1.8
3,621,202 - -1.1
3,621,202 - -2.1
3,621,202 - -2.7
3,621,248 + -2.1
3,621,249 - -0.3
3,621,249 - +0.3
3,621,907 - -1.2
3,621,943 - -0.8
3,621,943 - +0.6
3,621,943 - -1.5
3,621,960 - -0.4
3,621,991 - -0.1
3,622,014 - +0.5
3,622,014 - +2.2
3,622,014 - +1.4
3,622,068 - IAI47_17075 0.22 +1.1

Or see this region's nucleotide sequence